BAC Information

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BAC

Clone NameB6Ng01-089D05
Chromosome6 (Build37)
Map Location 66,242,169 - 66,322,571
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D05.bB6Ng01-089D05.g
ACCDH901839DH901840
length1,1471,119
definitionDH901839|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D05, 5' end.DH901840|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,242,169 - 66,243,324)(66,321,429 - 66,322,571)
sequence
gaattcttacttcagcttggcagccttaataatttccccataatagtctc
caacttacaactcaggtaataaacaaggtgaagcgtaagaagaaacacaa
tcttcatccctcaaagtgctgaaaagaaatttgttagggaaggggatgaa
actggtcctctcaaaagatgcctcaaagactgagaagcacaggagaaact
caagggaaaggctcttgtcttccccatcctcccctgtaagtttcctttgt
atgcaatccctactccacaattcactgtcttcagaccaggacccttgtct
catcacactcacatcccataatattgtgtctttctacaaagaggcttaca
gatctttgggacctggcagcctgtgaaaactcatataaaaaaattaaata
aattcatgtacctttttactattaatttgctcacatcaattttattttct
catcagaagcagaccagaaaaggacagaaaatgttgggttttgtttgttt
gtttgtttgtttgtttgtcttgagagggagtctcactatgtcaatcagat
tggactcaaactcacagagctcccctgcctcagtctcttaagtgatggga
ttaaaggtatgtgaaatcacaccaggcttagccttccctttcaagttatt
ggttcccagtgcacacaatatttatataaaatagaatcatatcactgatg
ttaccttcgtatgcaacattttatttaagaaaccacaagaagcttacata
actttgcatattctatatgatattttgaagcatctatgaggatcaggaga
aattttgcttggtttttggcaaactacacatgatatgtaaatcccagcat
gattaatgttcccaaataatgtttccagaaattctttatggctaaagagt
attatcatttagattagacaaatttattgtgttgggtataatttcaggaa
cgtctactctcaatgagtaataagaaagcaatttgtctacatgtaatttg
aggctcttagctcaagccatagctttgccactaaaattggggcctgaaga
atatcctctagggtagtcagtatgtttctgttgaaggatgtgtggatcac
actttccatttctggcatttccaggggggggagaaaggtctgtaagc
gaattcattacaaatgactttaagtgataagtttaaaatgattcttattt
ctactttttcgatatatgagccattagatttaagaactagggaagtttct
ctctccccctccccttctgttttcctcccccctccttaagtcatgagtct
ttccaggaatgagagaagctatatgaccttgttttctgcttgggtttcat
gggaaaaccagcttctctagcaaatttatctaccagagagtctaggacaa
ttcattctggaatactctttcagggtgtttatgaatatggacatctagac
cctctttgaaactttatgattctgtagattatgtccctttgaacatcaac
aattttcattgacttaatattaacaaaagtaatgctttattataaataaa
tttaaatgttataaatattattttactctagtcctggtctagcatttaca
gttttaaaattctttcttcttctgtaattgtaaataacatagagccacct
ggtatagccatatgagccatctccaccagtgggttcaaccaactacagat
ataattattaggaaaatcattttcctctaactagtctctctgacaaaact
cttggtttcactctcccttcaatgtgatctagctgtctgcagcctgatag
atactctgtgaagctgtatccttagaatgttccttggaattttgttcttc
tctgtgagatcttcaccctgattcttggaagccattttctggtttgtttg
tttgtttgtttttaatctactccctttcatcctctacttctgggggtatc
tttatgacagtatccatccataatgtgtatgagatatgtgtttttgaaat
cttaggaatccaaaataaatgaatttatccttttcccattgaatcatttt
gattttctacatttctagggctttaaaaactttgttatggacctcctact
gtgtagaaggaccattcttgaacctgagtgtatgaggatgggttgggcaa
atgaaataactagaccttattaaaatagcctttattgggaggcaaagact
gtatataatcacacatgtcatgtggaagatcctttaaagatatatgtgtt
tgtcatatgcaattgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66242169_66243324
seq2: B6Ng01-089D05.b_46_1192

seq1  GAATTCTTACTTCAGCTTGGCAGCCTTAATAATTTCCCCATAATAGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTCAGCTTGGCAGCCTTAATAATTTCCCCATAATAGTCTC  50

seq1  CAACTTACAACTCAGGTAATAAACAAGGTGAAGCGTAAGAAGAAACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTACAACTCAGGTAATAAACAAGGTGAAGCGTAAGAAGAAACACAA  100

seq1  TCTTCATCCCTCAAAGTGCTGAAAAGAAATTTGTTAGGGAAGGGGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCCCTCAAAGTGCTGAAAAGAAATTTGTTAGGGAAGGGGATGAA  150

seq1  ACTGGTCCTCTCAAAAGATGCCTCAAAGACTGAGAAGCACAGGAGAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCCTCTCAAAAGATGCCTCAAAGACTGAGAAGCACAGGAGAAACT  200

seq1  CAAGGGAAAGGCTCTTGTCTTCCCCATCCTCCCCTGTAAGTTTCCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAAGGCTCTTGTCTTCCCCATCCTCCCCTGTAAGTTTCCTTTGT  250

seq1  ATGCAATCCCTACTCCACAATTCACTGTCTTCAGACCAGGACCCTTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCCCTACTCCACAATTCACTGTCTTCAGACCAGGACCCTTGTCT  300

seq1  CATCACACTCACATCCCATAATATTGTGTCTTTCTACAAAGAGGCTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACTCACATCCCATAATATTGTGTCTTTCTACAAAGAGGCTTACA  350

seq1  GATCTTTGGGACCTGGCAGCCTGTGAAAACTCATATAAAAAAATTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGGGACCTGGCAGCCTGTGAAAACTCATATAAAAAAATTAAATA  400

seq1  AATTCATGTACCTTTTTACTATTAATTTGCTCACATCAATTTTATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTACCTTTTTACTATTAATTTGCTCACATCAATTTTATTTTCT  450

seq1  CATCAGAAGCAGACCAGAAAAGGACAGAAAATGTTGGGTTTTGTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAGCAGACCAGAAAAGGACAGAAAATGTTGGGTTTTGTTTGTTT  500

seq1  GTTTGTTTGTTTGTTTGTCTTGAGAGGGAGTCTCACTATGTCAATCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTCTTGAGAGGGAGTCTCACTATGTCAATCAGAT  550

seq1  TGGACTCAAACTCACAGAGCTCCCCTGCCTCAGTCTCTTAAGTGATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAAACTCACAGAGCTCCCCTGCCTCAGTCTCTTAAGTGATGGGA  600

seq1  TTAAAGGTATGTGAAATCACACCAGGCTTAGCCTTCCCTTTCAAGTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTATGTGAAATCACACCAGGCTTAGCCTTCCCTTTCAAGTTATT  650

seq1  GGTTCCCAGTGCACACAATATTTATATAAAATAGAATCATATCACTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGTGCACACAATATTTATATAAAATAGAATCATATCACTGATG  700

seq1  TTACCTTCGTATGCAACATTTTATTTAAGAAACCACAAGAAGCTTACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCGTATGCAACATTTTATTTAAGAAACCACAAGAAGCTTACATA  750

seq1  ACTTTGCATATTCTATATGATATTTTGAAGCATCTATGAGGATCAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCATATTCTATATGATATTTTGAAGCATCTATGAGGATCAGGAGA  800

seq1  AATTTTGCTTGGTTTTTGGCAAACTACACATGATATGTAAATCCCAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCTTGGTTTTTGGCAAACTACACATGATATGTAAATCCCAGCAT  850

seq1  GATTAATGTTCCCAAAATAAATGTTTCCAGAAATTCTTTATGGCTAAAGA  900
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  GATTAATGTTCCCAAA--TAATGTTTCCAGAAATTCTTTATGGCTAAAGA  898

seq1  GTATTATCATGTAGATTAGACAAA-TTATTGTGTTGGGTATAATTTCAGG  949
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  GTATTATCATTTAGATTAGACAAATTTATTGTGTTGGGTATAATTTCAGG  948

seq1  AACGTCTACTCTCAATGAGTAATAAGAAAGCAATTTGTCTACATGTAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTACTCTCAATGAGTAATAAGAAAGCAATTTGTCTACATGTAATT  998

seq1  TGAGGCTCTCAGCTCAAAGCCATAGCTTTGCCACTAAAAAATTGGGGCCT  1049
      ||||||||| ||||| |||||||||||||||||||  |||||||||||||
seq2  TGAGGCTCTTAGCTC-AAGCCATAGCTTTGCCACT--AAAATTGGGGCCT  1045

seq1  GAAGAATATCCTCTAGGGTAGTCAGTATGTTTCTGTTGAAGGGATGTGTT  1099
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  GAAGAATATCCTCTAGGGTAGTCAGTATGTTTCTGTTGAA-GGATGTGT-  1093

seq1  GGAATCACACTTCCTATTTCCTGCCATTTCCACGGGGGAGAAAAAAGTCC  1149
       | ||||||||| | |||| ||| |||||||| ||||| || ||| || |
seq2  -GGATCACACTTTCCATTT-CTGGCATTTCCAGGGGGGGGAGAAAGGT-C  1140

seq1  TGTAAGC  1156
      |||||||
seq2  TGTAAGC  1147

seq1: chr6_66321429_66322571
seq2: B6Ng01-089D05.g_70_1188 (reverse)

seq1  CACACATATTGCTATATGTACAAACACATATATATCTATAAAGTATCTAT  50
      |||||| ||||| ||||| ||||||||  |||||||| ||||| |||| |
seq2  CACACA-ATTGC-ATATG-ACAAACAC--ATATATCTTTAAAGGATCT-T  44

seq1  ACAACAATGACATGTTGTTGATTATTTACAGTCTTTTGCCATCCCAAATA  100
       ||   |||||||||   ||||||| ||||||| |||||| ||||||  |
seq2  CCA--CATGACATGT--GTGATTATATACAGTC-TTTGCC-TCCCAATAA  88

seq1  AAGCTATTTTTATATAAGGTCTAGTTTATTTCATTTTGCCCAACCCATCC  150
      | ||||||||   ||||||||||| |||||||| ||||||||||||||||
seq2  AGGCTATTTT--AATAAGGTCTAG-TTATTTCA-TTTGCCCAACCCATCC  134

seq1  TCATACACTCAGTTTCAAGAATGGTACCTGCTACACAGTAGGAGTTCAAT  200
      |||||||||||| |||||||||||| ||| |||||||||||||| || ||
seq2  TCATACACTCAGGTTCAAGAATGGT-CCTTCTACACAGTAGGAGGTCCAT  183

seq1  AAACAAAAGTTTTTTAAAGCCCTAG-AATGTAGAAAATCAAATAATGATT  249
       ||||||   ||||||||||||||| |||||||||||||||  |||||||
seq2  -AACAAA--GTTTTTAAAGCCCTAGAAATGTAGAAAATCAA--AATGATT  228

seq1  CAATTGGGAAAAGGATAAAATTCATTTATTTTGGATTCCTAAGATTTCAA  299
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAA-TGGGAAAAGGAT-AAATTCATTTATTTTGGATTCCTAAGATTTCAA  276

seq1  AAACACATATCTCATACACATTATGGATGGATACTGTCATAAAGATACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATATCTCATACACATTATGGATGGATACTGTCATAAAGATACCC  326

seq1  CCAGAAGTAGAGGATTGAAAGGGAGTAGATTAAAAACAAACAAACAAACA  399
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTAGAGGA-TGAAAGGGAGTAGATTAAAAACAAACAAACAAACA  375

seq1  AACCAGAAAATGGCTTCCAAGAATCAGGGTGAAGATCTCACAGAGAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAAATGGCTTCCAAGAATCAGGGTGAAGATCTCACAGAGAAGAA  425

seq1  CAAAATTCCAAGGAACATTCTAAGGATACAGCTTCACAGAGTATCTATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCCAAGGAACATTCTAAGGATACAGCTTCACAGAGTATCTATCA  475

seq1  GGCTGCAGACAGCTAGATCACATTGAAGGGAGAGTGAAACCAAGAGTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGACAGCTAGATCACATTGAAGGGAGAGTGAAACCAAGAGTTTT  525

seq1  GTCAGAGAGACTAGTTAGAGGAAAATGATTTTCCTAATAATTATATCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGACTAGTTAGAGGAAAATGATTTTCCTAATAATTATATCTGT  575

seq1  AGTTGGTTGAACCCACTGGTGGAGATGGCTCATATGGCTATACCAGGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTGAACCCACTGGTGGAGATGGCTCATATGGCTATACCAGGTGG  625

seq1  CTCTATGTTATTTACAATTACAGAAGAAGAAAGAATTTTAAAACTGTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTTATTTACAATTACAGAAGAAGAAAGAATTTTAAAACTGTAAA  675

seq1  TGCTAGACCAGGACTAGAGTAAAATAATATTTATAACATTTAAATTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGACCAGGACTAGAGTAAAATAATATTTATAACATTTAAATTTATT  725

seq1  TATAATAAAGCATTACTTTTGTTAATATTAAGTCAATGAAAATTGTTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAGCATTACTTTTGTTAATATTAAGTCAATGAAAATTGTTGAT  775

seq1  GTTCAAAGGGACATAATCTACAGAATCATAAAGTTTCAAAGAGGGTCTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGGGACATAATCTACAGAATCATAAAGTTTCAAAGAGGGTCTAG  825

seq1  ATGTCCATATTCATAAACACCCTGAAAGAGTATTCCAGAATGAATTGTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATATTCATAAACACCCTGAAAGAGTATTCCAGAATGAATTGTCC  875

seq1  TAGACTCTCTGGTAGATAAATTTGCTAGAGAAGCTGGTTTTCCCATGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTCTGGTAGATAAATTTGCTAGAGAAGCTGGTTTTCCCATGAAA  925

seq1  CCCAAGCAGAAAACAAGGTCATATAGCTTCTCTCATTCCTGGAAAGACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCAGAAAACAAGGTCATATAGCTTCTCTCATTCCTGGAAAGACTC  975

seq1  ATGACTTAAGGAGGGGGGAGGAAAACAGAAGGGGAGGGGGAGAGAGAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTAAGGAGGGGGGAGGAAAACAGAAGGGGAGGGGGAGAGAGAAAC  1025

seq1  TTCCCTAGTTCTTAAATCTAATGGCTCATATATCGAAAAAGTAGAAATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGTTCTTAAATCTAATGGCTCATATATCGAAAAAGTAGAAATAA  1075

seq1  GAATCATTTTAAACTTATCACTTAAAGTCATTTGTAATGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTTAAACTTATCACTTAAAGTCATTTGTAATGAATTC  1119