BAC Information

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BAC

Clone NameB6Ng01-089F20
Chromosome6 (Build37)
Map Location 40,533,316 - 40,658,837
singlet/doubletdoublet
Overlap geneClec5a, Tas2r138, Mgam
Upstream geneAdck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460
Downstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089F20.bB6Ng01-089F20.g
ACCDH901962DH901963
length1,105323
definitionDH901962|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F20, 5' end.DH901963|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,657,730 - 40,658,837)(40,533,316 - 40,533,639)
sequence
gaattcctaccttacaaaatattagatgattgaaagaccagatatcctaa
gtatactgaactgatcactgcataacatataaatctgtcaaagtatggca
tttatagtgtaaatattcacagttatatgtcattttaaaatgacacttta
cacaagcatagtaatctagagattaataaattagcatactcttagcatgt
ttgacagagactaaatcttgtatattttgccatttgtaacttcacaatcc
agagcttaatcaatctactgggtacaatctctaatctaataacttgatct
gcatcaggtatcatgttatggactctagaacatttcatccatttcaacat
tgtagttaacataaacaattcattttgaaatttgagttggatttataaat
atgtgatatgtattttgtatgtgagagtacaaatatatgggcatgtaaat
tagggacttaaaaccaaaaatgtttttaggattaaaaaatgtgctgaaat
tttaatatatgctgagtaattaagagtaaaaattctattgttggtgtaat
agtaaatagtagggatagggactgaatatgccatggttattggcatgcaa
agcacaggaatccttataatctttaagaaagaagaactcagcatacctga
aggatatgagctaacatcaaccctgcaaaaggacttagtgattacaggga
aaaaaatgcttggagggcactaaggtgatttcacagaagaaattcaagat
gaatcttaaaaactttgcagcaggaaaccaagcacaaaaatgagagcaaa
gagttctgctaaagaaacaacaaaagcaaagattcagcgtgttaaacatc
ggctcagaaaagacagaaagcacggtggaaagaactacaacttaatggtt
agttggggaggacttgaggctagacagccatcaacttcattctgatgaaa
ccacacttataaacaaattacgtggaaaacacagagctcaagttcagacg
gagctcagattctgaaggttctttagtgaggattctcccagcagcatttg
accactcactatctagcagcctggtgttggaatccataccgccttgtgaa
gacaa
ttttgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtttgtgact
gtgtgtgagcatgtatgtgcatgtgtttgtgtgtatgcattgtatgtaca
tgcctgagtggatgtatgtacatgtgtgtgaagatgtgtttacattcatg
tgtgaggggaccagtgactgacactgggtgccttcttcaatctttgtcca
tctcatgtattaaggcaggatctctttatgaaactggagttcattaattc
aactacacggactggccaacgagtaccagggattctcccgctctgtctcc
atccaccagtcttgctgttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40657730_40658837
seq2: B6Ng01-089F20.b_49_1153 (reverse)

seq1  TTGTCTTCCACCATGGCGGTATTGGAATCCCACA-CAGGCTGCTAGATAG  49
      ||||||||   || ||||||| |||| ||| ||| |||||||||||||||
seq2  TTGTCTTC--ACAAGGCGGTA-TGGATTCCAACACCAGGCTGCTAGATAG  47

seq1  TGAGGTGTCAAATGCTGCTGAGAGAGTCCTCACTTAAAGGAGCCTTCAGA  99
      ||||  |||||||||||||| |||| ||||||||  || || ||||||||
seq2  TGAGTGGTCAAATGCTGCTGGGAGAATCCTCACT--AAAGAACCTTCAGA  95

seq1  ATCTGAGCTCCGTCTGGACTTGAGCTCTGTGTCTTCCACTGTAATTTGTT  149
      |||||||||||||||| ||||||||||||||| |||||| |||||||| |
seq2  ATCTGAGCTCCGTCTGAACTTGAGCTCTGTGTTTTCCAC-GTAATTTG-T  143

seq1  TTATATGTGTGGTTTCATCAGAATGAAGTTGATTGGCTGTCTAGCCTCAA  199
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  TTATAAGTGTGGTTTCATCAGAATGAAGTTGA-TGGCTGTCTAGCCTCAA  192

seq1  GTCCTCCCC-ACTAACCATTTAGTTGTAGTTCTGTCCACCGTGC-TTCTG  247
      ||||||||| |||||||||| |||||||||||| |||||||||| |||||
seq2  GTCCTCCCCAACTAACCATTAAGTTGTAGTTCTTTCCACCGTGCTTTCTG  242

seq1  TC-TTTCTGAGCCGATG-TTAACACGCTGAATCTTTGCTTTTGTTGTTTC  295
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGAGCCGATGTTTAACACGCTGAATCTTTGCTTTTGTTGTTTC  292

seq1  TTTAGCAGAACTCTTTGCTCTCATTTTTGTGCTTGGTTTCCTGCTGCAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGAACTCTTTGCTCTCATTTTTGTGCTTGGTTTCCTGCTGCAAA  342

seq1  GTTTTTAAGATTCATCCTGAATTTCTTCTGTGAAATCACCTTAGTGCCCT  395
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTTTAAGATTCATCTTGAATTTCTTCTGTGAAATCACCTTAGTGCCCT  392

seq1  CCAAGCATTTTTTTCCCTGTAATCACTAAGTCCTTTTGCAGGGTTGATGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATTTTTTTCCCTGTAATCACTAAGTCCTTTTGCAGGGTTGATGT  442

seq1  TAGCTCATATCCTTCAGGTATGCTGAGTTCTTCTTTCTTAAAGATTATAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATATCCTTCAGGTATGCTGAGTTCTTCTTTCTTAAAGATTATAA  492

seq1  GGATTCCTGTGCTTTGCATGCCAATAACCATGGCATATTCAGTCCCTATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCTGTGCTTTGCATGCCAATAACCATGGCATATTCAGTCCCTATC  542

seq1  CCTACTATTTACTATTACACCAACAATAGAATTTTTACTCTTAATTACTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATTTACTATTACACCAACAATAGAATTTTTACTCTTAATTACTC  592

seq1  AGCATATATTAAAATTTCAGCACATTTTTTAATCCTAAAAACATTTTTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATATTAAAATTTCAGCACATTTTTTAATCCTAAAAACATTTTTGG  642

seq1  TTTTAAGTCCCTAATTTACATGCCCATATATTTGTACTCTCACATACAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTCCCTAATTTACATGCCCATATATTTGTACTCTCACATACAAA  692

seq1  ATACATATCACATATTTATAAATCCAACTCAAATTTCAAAATGAATTGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATCACATATTTATAAATCCAACTCAAATTTCAAAATGAATTGTT  742

seq1  TATGTTAACTACAATGTTGAAATGGATGAAATGTTCTAGAGTCCATAACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAACTACAATGTTGAAATGGATGAAATGTTCTAGAGTCCATAACA  792

seq1  TGATACCTGATGCAGATCAAGTTATTAGATTAGAGATTGTACCCAGTAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTGATGCAGATCAAGTTATTAGATTAGAGATTGTACCCAGTAGA  842

seq1  TTGATTAAGCTCTGGATTGTGAAGTTACAAATGGCAAAATATACAAGATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAGCTCTGGATTGTGAAGTTACAAATGGCAAAATATACAAGATT  892

seq1  TAGTCTCTGTCAAACATGCTAAGAGTATGCTAATTTATTAATCTCTAGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTGTCAAACATGCTAAGAGTATGCTAATTTATTAATCTCTAGAT  942

seq1  TACTATGCTTGTGTAAAGTGTCATTTTAAAATGACATATAACTGTGAATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGCTTGTGTAAAGTGTCATTTTAAAATGACATATAACTGTGAATA  992

seq1  TTTACACTATAAATGCCATACTTTGACAGATTTATATGTTATGCAGTGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTATAAATGCCATACTTTGACAGATTTATATGTTATGCAGTGAT  1042

seq1  CAGTTCAGTATACTTAGGATATCTGGTCTTTCAATCATCTAATATTTTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGTATACTTAGGATATCTGGTCTTTCAATCATCTAATATTTTGT  1092

seq1  AAGGTAGGAATTC  1108
      |||||||||||||
seq2  AAGGTAGGAATTC  1105

seq1: chr6_40533316_40533639
seq2: B6Ng01-089F20.g_77_399

seq1  TTTTGTGTGTGTGTGTGTGTCTCTGTGTGTGTGTGTGTGTGTTTGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTGTGTGTGTGTGTGTGTCTCTGTGTGTGTGTGTGTGTGTTTGTGACT  50

seq1  GTGTGTGAGCATGTATGTGCATGTGTTTGTGTGTATGCATTGTATGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAGCATGTATGTGCATGTGTTTGTGTGTATGCATTGTATGTACA  100

seq1  TGCCTGAGTGGATGTATGTACATGTGTGTGAAGATGTGTTTACATTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGTGGATGTATGTACATGTGTGTGAAGATGTGTTTACATTCATG  150

seq1  TGTGAGGGGACCAGTGACTGACACTGGGTGCCTTCTTCAATCTTTGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGGACCAGTGACTGACACTGGGTGCCTTCTTCAATCTTTGTCCA  200

seq1  TCTCATGTATTAAGGCAGGATCTCTTTATGAAACTGGAGTTCATTAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTATTAAGGCAGGATCTCTTTATGAAACTGGAGTTCATTAATTC  250

seq1  AACTACACGGACTGGCCAACGAGTACCAGGGATTCTCCCAGCTCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACTACACGGACTGGCCAACGAGTACCAGGGATTCTCCC-GCTCTGTCTC  299

seq1  CATCCACCAGTCTTGCTGTTACAG  324
      ||||||||||||||||||||||||
seq2  CATCCACCAGTCTTGCTGTTACAG  323