BAC Information

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BAC

Clone NameB6Ng01-089G07
ChromosomeY (Build37)6 (Build37)
Map Location 1,120,708 - 1,121,081132,008,103 - 132,009,265
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089G07.bB6Ng01-089G07.g
ACCDH901982DH901983
length1,0281,156
definitionDH901982|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G07, 5' end.DH901983|Mus musculus domesticus DNA, BAC clone: B6Ng01-089G07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,708 - 1,121,081)(132,008,103 - 132,009,265)
sequence
gaattcccctgtactggggcatataaagtttgcaagtccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatatatatgcagctaga
gtcaagagctccggggtactggttagctcataatgttgttccacctatag
ggttgcagatccctttagctccttggctactttctctagctcctccattg
ggagccctatgatccatccattagctgactgtgagcatccacttctgtgt
ttgctgggccccggcatagtctcacaagagacagctacatctgcgtcctt
tcaataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctga
ttatggggtggatccctggctatggcagtctctacatggtccatcctttc
atctcagctccaaactccgtctctgtaactccttccatgggtgttttgtt
cccaaatctaaggaggggcatagtgtccacacttcagtcttcattctcct
tgagtttcatgtgtttagcaaattatatcttatatcttgggtatcctagg
tttggggctaatatccacttatcagtgaatacatattgtgtgagtttctt
tgtgaatgtgttacctcactcaggatgatgccctccaggtccatccattt
ggctaggaatttcataaattcattctttttaatagctgagtagtactcca
tttgtgtagatgtaccacattttctgtatccattcctctgttgaggggca
tctaggttctttccagcttctggctattataaataaggctgctatgaaca
tagtggagcatgtgtccttcttacctgttggggcatcttctggatatatg
cccaggagaggtattgctggatcctcccggtagtactatgtccagttttc
tgagaaccgccagactgatttccagagtggttgtacaagcctgcactccc
accaacaatggaggagtgttctctttcttcacatctcgcagcatctgctg
tcactgaattttgatcttagcattctga
gaattccagaaggcttacctgggcacaaataagctgccaggcttgtttgt
ctcacttactatgtattccatcttggtgtcctaatcacccgcagaaatga
acagaaagtcaaccaaagggtatgattattggcaaaaatatacttgtttg
cataggagaaaatccttccaggaccacaaataacaaggagagagtcacaa
tcataacgaactagaatttcaattctaatatctgaaatttcactatattg
cacacattgttgcacaaatatcatgccctgtgatttagaactgaattctt
tctttttcattttttattagaacttttcttcatttacatttcaaatgcta
tcctgaaaatcccctatactctccccactgccctacttctctacccaaac
actcccaatttttgatcctgctgttcccctctactggggcatataaattt
tgcaatgtcaaaaggcttttcttctgaatgatggccaactaggccatctg
agaacctatgcagtcccaggcaaatacaaaagtggatgctcacagtcacc
tattggatggaacacagggcaccaatggaggagctagagaaagtacaaag
gagctgaaggggtctgcaacccaataggtggaacaacaatatgaactaac
cagtaacctcagagaccatgtctctagaactgaattcttgacagcctcag
ccctactgcatcctgctaggttagagtcccaaagaagagtcagggatgca
tgtcatgctgctgtcactagtgtgttcaacagtaaggaagtgaaatatca
ctttgttctatcttccttataaagactgtggccttccttcctccagcaca
aacttgggagtaatcatccaagatgctggtcgtcctgctcacagcagtgt
tgttggtactgagctcagctcagagacagatgaaggtttgaagtatggga
gagagtgtacagtgatatggactgcagttacacatttcatgacaggagaa
atgaaaggagactgaaaagggacagaagacaaaaaaatatggagaacaat
agaggaacattgttttcattttacttttagagcttaaactcgactttggt
atgaattacaaatattctgcgaacaaaatacctcagtaatttataaaaga
actttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120708_1121081
seq2: B6Ng01-089G07.b_46_419

seq1  ATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  50

seq1  TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100

seq1  CAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGG  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGG  150

seq1  TTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGG  200

seq1  AGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTT  250

seq1  GCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTC  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTC  300

seq1  AATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATT  350

seq1  ATGGGGTGGATCCCTGGCTATGGC  374
      ||||||||||||||||||||||||
seq2  ATGGGGTGGATCCCTGGCTATGGC  374

seq1: chr6_132008103_132009265
seq2: B6Ng01-089G07.g_68_1223 (reverse)

seq1  AAAAGTCTTTTTATAAATTTACTGAGGTTATTTTGTTGCAAGAATATTTG  50
      ||||||  ||||||||| ||||||||| |||||||||   ||||||||||
seq2  AAAAGTTCTTTTATAAA-TTACTGAGG-TATTTTGTTCGCAGAATATTTG  48

seq1  TAATTCATACCAGAAGTCGAGTTTAAGCTCTAGAAGTAAAATGAAAACAA  100
      |||||||||||| ||||||||||||||||||| ||||||||||||||| |
seq2  TAATTCATACCA-AAGTCGAGTTTAAGCTCTAAAAGTAAAATGAAAAC-A  96

seq1  ATGTTCTTCTATTTGTTCT-CATATTTTTTTGTC-TCTGTCCCTTTTCAG  148
      |||||| |||| ||||||| |||||||||||||| |||||||||||||||
seq2  ATGTTCCTCTA-TTGTTCTCCATATTTTTTTGTCTTCTGTCCCTTTTCAG  145

seq1  TCTCCTTTCATTTCTCCCTGTCATGAAATGTGTAACTGCAGTCCAATATC  198
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TCTCCTTTCATTTCT-CCTGTCATGAAATGTGTAACTGCAGTCC-ATATC  193

seq1  ACTGTACCACTCTCTCCCATACTTCAAACCTTCATCTTGTCTCTGAGCTG  248
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTGTA-CACTCTCTCCCATACTTCAAACCTTCATC-TGTCTCTGAGCTG  241

seq1  AGCTCAGTACCAACAACACTGCTGTGAGCAGGACGACCAGCATCTTGGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTACCAACAACACTGCTGTGAGCAGGACGACCAGCATCTTGGAT  291

seq1  GATTACTCCCAAGTTTGTGCTGGAGGAAGGAAGGCCACAGTCTTTATAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTCCCAAGTTTGTGCTGGAGGAAGGAAGGCCACAGTCTTTATAAG  341

seq1  GAAGATAGAACAAAGTGATATTTCACTTCCTTACTGTTGAACACACTAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGAACAAAGTGATATTTCACTTCCTTACTGTTGAACACACTAGT  391

seq1  GACAGCAGCATGACATGCATCCCTGACTCTTCTTTGGGACTCTAACCTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGCATGACATGCATCCCTGACTCTTCTTTGGGACTCTAACCTAG  441

seq1  CAGGATGCAGTAGGGCTGAGGCTGTCAAGAATTCAGTTCTAGAGACATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCAGTAGGGCTGAGGCTGTCAAGAATTCAGTTCTAGAGACATGG  491

seq1  TCTCTGAGGTTACTGGTTAGTTCATATTGTTGTTCCACCTATTGGGTTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGGTTACTGGTTAGTTCATATTGTTGTTCCACCTATTGGGTTGC  541

seq1  AGACCCCTTCAGCTCCTTTGTACTTTCTCTAGCTCCTCCATTGGTGCCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTTCAGCTCCTTTGTACTTTCTCTAGCTCCTCCATTGGTGCCCT  591

seq1  GTGTTCCATCCAATAGGTGACTGTGAGCATCCACTTTTGTATTTGCCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCATCCAATAGGTGACTGTGAGCATCCACTTTTGTATTTGCCTGG  641

seq1  GACTGCATAGGTTCTCAGATGGCCTAGTTGGCCATCATTCAGAAGAAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATAGGTTCTCAGATGGCCTAGTTGGCCATCATTCAGAAGAAAAG  691

seq1  CCTTTTGACATTGCAAAATTTATATGCCCCAGTAGAGGGGAACAGCAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGACATTGCAAAATTTATATGCCCCAGTAGAGGGGAACAGCAGGA  741

seq1  TCAAAAATTGGGAGTGTTTGGGTAGAGAAGTAGGGCAGTGGGGAGAGTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTGGGAGTGTTTGGGTAGAGAAGTAGGGCAGTGGGGAGAGTAT  791

seq1  AGGGGATTTTCAGGATAGCATTTGAAATGTAAATGAAGAAAAGTTCTAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTTTCAGGATAGCATTTGAAATGTAAATGAAGAAAAGTTCTAAT  841

seq1  AAAAAATGAAAAAGAAAGAATTCAGTTCTAAATCACAGGGCATGATATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAAAAAGAAAGAATTCAGTTCTAAATCACAGGGCATGATATTT  891

seq1  GTGCAACAATGTGTGCAATATAGTGAAATTTCAGATATTAGAATTGAAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACAATGTGTGCAATATAGTGAAATTTCAGATATTAGAATTGAAAT  941

seq1  TCTAGTTCGTTATGATTGTGACTCTCTCCTTGTTATTTGTGGTCCTGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTCGTTATGATTGTGACTCTCTCCTTGTTATTTGTGGTCCTGGAA  991

seq1  GGATTTTCTCCTATGCAAACAAGTATATTTTTGCCAATAATCATACCCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCTCCTATGCAAACAAGTATATTTTTGCCAATAATCATACCCTT  1041

seq1  TGGTTGACTTTCTGTTCATTTCTGCGGGTGATTAGGACACCAAGATGGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACTTTCTGTTCATTTCTGCGGGTGATTAGGACACCAAGATGGAA  1091

seq1  TACATAGTAAGTGAGACAAACAAGCCTGGCAGCTTATTTGTGCCCAGGTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTAAGTGAGACAAACAAGCCTGGCAGCTTATTTGTGCCCAGGTA  1141

seq1  AGCCTTCTGGAATTC  1163
      |||||||||||||||
seq2  AGCCTTCTGGAATTC  1156