BAC Information

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BAC

Clone NameB6Ng01-089K05
Chromosome6 (Build37)
Map Location 9,154,997 - 9,156,038
singlet/doubletsinglet
Overlap geneNxph1
Upstream geneBC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089K05.bB6Ng01-089K05.g
ACCDH902166DH902167
length4851,021
definitionDH902166|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K05, 5' end.DH902167|Mus musculus domesticus DNA, BAC clone: B6Ng01-089K05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
catgatccacttagacttgagctttgtacaaggagataagaatggatcaa
ctgggatccatcccatatacaaccaccaaacccagacactattgcatatg
ccagcaagattttgctgacaggaccctgacatagctctctcttgtgagtt
tatgctaatacctggcaaatacagaagtggatgctcacactcatctattg
gatggaacacagaacccctaatgaaggagctagagaaaatatccaaggag
ctaaaggggtctgcaactctataggaggaacaaggatatgaactaaccaa
tacccccagagctgtgtctctagttgcatatgtagcagaggatggcatgg
tcagccatcaatgggagaaaaggcccatggtattggaaagatcatatgcc
ctagtacaggggaatgccagggccaggaaacagtagtgggtgggttgaag
agcagggcagggagggggagtgtatagggggcttt

gaattcttcggggcaggatttggagttccagtgataactcagtctgccta
ggaaagaaaatctctgaatacattattactttaaaaccaagtattagaga
ctttagacttttaaacatattggacaaaattttggatttctggcagaagt
aagaaatccacttttattaaaacattacttttggaaaaaattaaatattc
attggtaatactgaataaaactttcttctatattaaatctcaaattagaa
tagggtacttttagtttctgtgatgaaaggtgcattattttgtgggtata
atagctgtaattaagagcttgatggatgatagtctttgaagtgtactatc
tctggcattaacatcatactttacttccagactatgtaacttttgttata
actttctcttgacctaaatgcttgttgactatccacattcccttactgac
aacaatgtcatcttaagactcaagtgcacactagttacatgcctcttgcc
tcttccattgttgagcatgtttaatagctccttggcctttcttctaaagg
aatctgactgcctcttagtcctgtacttttaatttgatcttaacatagta
agtagtttataccacatcaaaatctgaccaccactggcaggaaataacat
ttaaatttttctaataaagagtaaaaccctacaactcagttactcccaca
tggagccttgcttatcatttctggtgatatttctaatgctgctgtttccc
aatccatcacccaggacatattcatgaaacaactcctctttaattatttt
cttctttaatgtaatcgtacctaaaactaaagattgtgcctatatcagaa
gattcaaatcaatgtttcattagatgctaaaagttgaaatttcacagaaa
gcatgatttgtctcacaagatcacttaaattatcagtctaacttatatag
atttatcattataaaaatatttactaaatgcatgttgaaatgtttacaaa
tgtagcacattttgtatggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9154997_9156038
seq2: B6Ng01-089K05.g_70_1090

seq1  GAATTCTTCGGGGCAGGATTTGGAGTTCCAGTGATAACTCAGTCTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGGGGCAGGATTTGGAGTTCCAGTGATAACTCAGTCTGCCTA  50

seq1  GGAAAGAAAATCTCTGAATACATTATTACTTTAAAACCAAGTATTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAATCTCTGAATACATTATTACTTTAAAACCAAGTATTAGAGA  100

seq1  CTTTAGACTTTTAAACATATTGGACAAAATTTTGGATTTCTGGCAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACTTTTAAACATATTGGACAAAATTTTGGATTTCTGGCAGAAGT  150

seq1  AAGAAATCCACTTTTATTAAAACATTACTTTTGGAAAAAATTAAATATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCCACTTTTATTAAAACATTACTTTTGGAAAAAATTAAATATTC  200

seq1  ATTGGTAATACTGAATAAAACTTTCTTCTATATTAAATCTCAAATTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAATACTGAATAAAACTTTCTTCTATATTAAATCTCAAATTAGAA  250

seq1  TAGGGTACTTTTAGTTTCTGTGATGAAAGGTGCATTATTTTGTGGGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTACTTTTAGTTTCTGTGATGAAAGGTGCATTATTTTGTGGGTATA  300

seq1  ATAGCTGTAATTAAGAGCTTGATGGATGATAGTCTTTGAAGTGTACTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTAATTAAGAGCTTGATGGATGATAGTCTTTGAAGTGTACTATC  350

seq1  TCTGGCATTAACATCATACTTTACTTCCAGACTATGTAACTTTTGTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATTAACATCATACTTTACTTCCAGACTATGTAACTTTTGTTATA  400

seq1  ACTTTCTCTTGACCTAAATGCTTGTTGACTATCCACATTCCCTTACTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTTGACCTAAATGCTTGTTGACTATCCACATTCCCTTACTGAC  450

seq1  AACAATGTCATCTTAAGACTCAAGTGCACACTAGTTACATGCCTCTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTCATCTTAAGACTCAAGTGCACACTAGTTACATGCCTCTTGCC  500

seq1  TCTTCCATTGTTGAGCATGTTTAATAGCTCCTTGGCCTTTCTTCTAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATTGTTGAGCATGTTTAATAGCTCCTTGGCCTTTCTTCTAAAGG  550

seq1  AATCTGACTGCCTCTTAGTCCTGTACTTTTAATTTGATCTTAACATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGACTGCCTCTTAGTCCTGTACTTTTAATTTGATCTTAACATAGTA  600

seq1  AGTAGTTTATACCACATCAAAATCTGACCACCACTGGCAGGAAATAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTATACCACATCAAAATCTGACCACCACTGGCAGGAAATAACAT  650

seq1  TTAAATTTTTCTAATAAAGAGTAAAACCCTACAACTCAGTTACTCCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTTCTAATAAAGAGTAAAACCCTACAACTCAGTTACTCCCACA  700

seq1  TGGAGCCTTGCTTATCATTTCTGGTGATATTTCTAATGCTGCTGTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTTGCTTATCATTTCTGGTGATATTTCTAATGCTGCTGTTTCCC  750

seq1  AATCCATCACCCAGGACATATTCATGAAACAACTCCTCTTTAATTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCACCCAGGACATATTCATGAAACAACTCCTCTTTAATTATTTT  800

seq1  CTTCTTTTAATGTAATCGTACCTAAAACTAAAGATTGTGCCCTATATCAG  850
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTC-TTTAATGTAATCGTACCTAAAACTAAAGATTGTG-CCTATATCAG  848

seq1  AAGATTTCAAATCAATGTTTCAATCAGATGCTAAAAGTTTGAAATTTCAC  900
      |||| |||||||||||||||| || |||||||||||| ||||||||||||
seq2  AAGA-TTCAAATCAATGTTTC-ATTAGATGCTAAAAG-TTGAAATTTCAC  895

seq1  AGAAAGCATGATTTGTCTCACAAGATCACATAAATTATACAGTCTAACTT  950
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  AGAAAGCATGATTTGTCTCACAAGATCACTTAAATTAT-CAGTCTAACTT  944

seq1  ATATAGTATTTTTATCTATTATAAAAATATATTACCTAAAATGCCATTGT  1000
      ||||||    |||||| ||||||||||||| ||||   ||||||   |||
seq2  ATATAG---ATTTATC-ATTATAAAAATAT-TTAC--TAAATGC--ATGT  985

seq1  TTGAAAATGTTTTAGCAAAATGTAGCACATTTTGTTATGGCT  1042
      |   ||||||||     ||||||||||||||||| |||||||
seq2  T--GAAATGTTT---ACAAATGTAGCACATTTTG-TATGGCT  1021


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