BAC Information

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BAC

Clone NameB6Ng01-090C12
Chromosome2 (Build37)6 (Build37)
Map Location 30,842,145 - 30,842,36686,819,383 - 86,820,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSpna2, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624
Downstream geneUsp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090C12.bB6Ng01-090C12.g
ACCDH902532DH902533
length103979
definitionDH902532|Mus musculus domesticus DNA, BAC clone: B6Ng01-090C12, 5' end.DH902533|Mus musculus domesticus DNA, BAC clone: B6Ng01-090C12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,842,145 - 30,842,366)(86,819,383 - 86,820,363)
sequence
gaattccaggacagccagggctacacaaagaaatcctgtcttggaaaaaa
aggagaaaaagaagaataataaagaaggagagagggagaggggagagggg
aga
gaattcaaaagtcaacttaagagactggattctctgctgcctttctgtag
gtcgttgggcttgaactctggtcttggaagcaagatgcttggcaaggagt
gtcttaatgactgggccaggaaatttgtttgtttgtttgtttaaaggctt
tgggcatttgttttcttacttccttacactaactttctgaatgttaaatt
cctggctccaaagatgggcacgttttagttttcaattcaagctacaagcc
tttctccaggaaggttggtctgtaaggacgtctgtcttgtctgccatggt
tagaagattggatggatttccttccttttcccttccatacttatttttct
tttcatttgtttcttgtgttgaaattcttatgttccttggctcacattct
tgttaggatactcatcattgtttccatgtttaaggcattaatccttgttg
ggtagcatggtgatgcatatcttggctatgtagccactcacaaggcagag
gcaggtggatctctgtgagttcaaggccagcttggtagtttccagacagc
caggactacacacagaaaccatgtcaaaaaaccccaaaatgaaacaaaaa
gggaccaatccttggtgatatgcatggcaagttgtttggttttttttttt
tttttttctattttgttattcacatttgctaatggtgtgttttttgtgga
tattttaaatttccgtacattcaaacttttttttccccctaaatgatctt
tttgagagtaatatttggaaaggcctcaggaaagggcagggcctattttc
cagagagctgtggggtctggaggctgtctgagaaccactagagcccttct
gagctttctggtggagtgtggggttgagcagcagtgacccttagaaagag
ctgggagccgaggagcagtctgactgaaggaagaacattaaaaactgtcg
ctgcgggctggtagcagagtgtaacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30842145_30842366
seq2: B6Ng01-090C12.b_47_146 (reverse)

seq1  TGTCCCCTCCTCTCTCACTTTCCTCTCTCCTTCTTTATGTTTGTGGTTTT  50
      | |||||||  | |||   | ||||||||||||||||           ||
seq2  TCTCCCCTCTCCCCTC---TCCCTCTCTCCTTCTTTA-----------TT  36

seq1  AGTTTTTGTTTGGGGATTAAAAGCATATGTCAGCACACCCAACTTCTCTG  100
      | || || |||                                |||||  
seq2  A-TTCTTCTTT--------------------------------TTCTC--  51

seq1  TTGTTTTTTTTTTTGTTGTTGTTGTTGTTGTTGTTGGTTTGTTTGTTTGT  150
                                                        
seq2  --------------------------------------------------  51

seq1  TTTAGGTTTTTTTAGTTTGGTTTGTTTTTTTTCGAGACAGGGTTTCTCTA  200
                              ||||||| | ||||||| ||||| | 
seq2  -----------------------CTTTTTTTCCAAGACAGGATTTCTTTG  78

seq1  TGTAGCCCTGGCTGTCCTGGAA  222
      ||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAA  100

seq1: chr6_86819383_86820363
seq2: B6Ng01-090C12.g_69_1047

seq1  GAATTCAAAAGTCAACTTAAGAGACTGGATTCTCTGCTGCCTTTCTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTCAACTTAAGAGACTGGATTCTCTGCTGCCTTTCTGTAG  50

seq1  GTCGTTGGGCTTGAACTCTGGTCTTGGAAGCAAGATGCTTGGCAAGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTGGGCTTGAACTCTGGTCTTGGAAGCAAGATGCTTGGCAAGGAGT  100

seq1  GTCTTAATGACTGGGCCAGGAAATTTGTTTGTTTGTTTGTTTAAAGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATGACTGGGCCAGGAAATTTGTTTGTTTGTTTGTTTAAAGGCTT  150

seq1  TGGGCATTTGTTTTCTTACTTCCTTACACTAACTTTCTGAATGTTAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTTGTTTTCTTACTTCCTTACACTAACTTTCTGAATGTTAAATT  200

seq1  CCTGGCTCCAAAGATGGGCACGTTTTAGTTTTCAATTCAAGCTACAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCCAAAGATGGGCACGTTTTAGTTTTCAATTCAAGCTACAAGCC  250

seq1  TTTCTCCAGGAAGGTTGGTCTGTAAGGACGTCTGTCTTGTCTGCCATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAGGAAGGTTGGTCTGTAAGGACGTCTGTCTTGTCTGCCATGGT  300

seq1  TAGAAGATTGGATGGATTTCCTTCCTTTTCCCTTCCATACTTATTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATTGGATGGATTTCCTTCCTTTTCCCTTCCATACTTATTTTTCT  350

seq1  TTTCATTTGTTTCTTGTGTTGAAATTCTTATGTTCCTTGGCTCACATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGTTTCTTGTGTTGAAATTCTTATGTTCCTTGGCTCACATTCT  400

seq1  TGTTAGGATACTCATCATTGTTTCCATGTTTAAGGCATTAATCCTTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGATACTCATCATTGTTTCCATGTTTAAGGCATTAATCCTTGTTG  450

seq1  GGTAGCATGGTGATGCATATCTTGGCTATGTAGCCACTCACAAGGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATGGTGATGCATATCTTGGCTATGTAGCCACTCACAAGGCAGAG  500

seq1  GCAGGTGGATCTCTGTGAGTTCAAGGCCAGCTTGGTAGTTTCCAGACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATCTCTGTGAGTTCAAGGCCAGCTTGGTAGTTTCCAGACAGC  550

seq1  CAGGACTACACACAGAAACCATGTCAAAAAACCCCAAAATGAAACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTACACACAGAAACCATGTCAAAAAACCCCAAAATGAAACAAAAA  600

seq1  GGGACCAATCCTTGGTGATATGCATGGCAAGTTGTTTGG-TTTTTTTTTT  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGACCAATCCTTGGTGATATGCATGGCAAGTTGTTTGGTTTTTTTTTTT  650

seq1  TTTTTTTCTATTTTGTTATTCACATTTGCTAATGGTGTG-TTTTTGTGGA  698
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTTTTCTATTTTGTTATTCACATTTGCTAATGGTGTGTTTTTTGTGGA  700

seq1  TATTTTAAATTTCCGTACATTCAAACTTTTTTTTTCCCCCTAAATGATCT  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATTTTAAATTTCCGTACATTCAAAC-TTTTTTTTCCCCCTAAATGATCT  749

seq1  TTTTGAGAGTAACAATTGGAAAGGCCTCAGGAAA-GGCAGGGCCTAGTTT  797
      |||||||||||| | ||||||||||||||||||| ||||||||||| |||
seq2  TTTTGAGAGTAATATTTGGAAAGGCCTCAGGAAAGGGCAGGGCCTATTTT  799

seq1  CCAGAGAGCTGT-GGGTCTGGAGGCTGTCTGAGAA-CACTAGAAGCCATT  845
      |||||||||||| |||||||||||||||||||||| |||||| |||| ||
seq2  CCAGAGAGCTGTGGGGTCTGGAGGCTGTCTGAGAACCACTAG-AGCCCTT  848

seq1  CTGAGCTTTTCTGGTGGAGTTGTGGGGTTGAGCAGCAGTGA-CCTTAG-A  893
      |||||| |||||||||||| ||||||||||||||||||||| |||||| |
seq2  CTGAGC-TTTCTGGTGGAG-TGTGGGGTTGAGCAGCAGTGACCCTTAGAA  896

seq1  AGAGCTGGGAGCCTGAGGAGCAGTCTGACTGAAGGAAGAGCATTTAGAAA  943
      ||||||||||||| ||||||||||||||||||||||||| ||||   |||
seq2  AGAGCTGGGAGCC-GAGGAGCAGTCTGACTGAAGGAAGAACATT--AAAA  943

seq1  GCTGTCGCTGCGGGCTGGGTAGCAGAGTGGTAACAGAA  981
       ||||||||||||||| ||||||||||| |||||||||
seq2  ACTGTCGCTGCGGGCT-GGTAGCAGAGT-GTAACAGAA  979