BAC Information

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BAC

Clone NameB6Ng01-090C20
Chromosome6 (Build37)
Map Location 126,614,584 - 126,717,099
singlet/doubletdoublet
Overlap geneKcna6
Upstream geneVwf, Tmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1
Downstream geneLOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090C20.bB6Ng01-090C20.g
ACCDH902548DH902549
length1,0131,038
definitionDH902548|Mus musculus domesticus DNA, BAC clone: B6Ng01-090C20, 5' end.DH902549|Mus musculus domesticus DNA, BAC clone: B6Ng01-090C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,614,584 - 126,615,496)(126,716,072 - 126,717,099)
sequence
gaattctccctcagcctccttaaattgtctctagctcttcatcttggagt
agggccccatgagaatgcctccattcatgttggcatgtattaagatttca
tgagtgcagcttccctgtcctacatcaaagacacagcttgcagcagacgt
tctgatcctctgcctcttataatctttgctcagtgttctcttagatgttg
gctttgtgttgtatgtgtatctgttggagctaggcatcccagagtcagct
gttctctacacattaacaggttatggctttttgtagtggtctctgtctgc
tgcaaaaaagacatttctttgatgaagaacgaaagctgcacttatctgtg
gatataagtaagcacttaaagtgcacttgggaatcgtactagtttataac
tgtggcagtagtgtgtgcgttcactgcaggtgggattgtaaactggtgta
ggcattacacaaatcaccgtggtgaactctcaaaagctaaaagagtctca
accataccccaacggtgccacctcctcctccacagacacttgctcagccg
tcttcactgctgttctattcagaatggaaacaacctaaatgatcttcgac
tgaggaacggatcacaagcgcgtggtacatatacctgagtgaatcctatt
caactggaaagaaaatgaaatggtgacatttgcagggaaatgggtggaac
taaaagactacagagagtgagggtgacccagaacttaaaggtaagaccct
gtgctgaagacaccacacacgttgtacacaggacttggagggattcaaac
tggtgctgatgctgaagtcttcttcatggggattagctctcatagtaccc
aaagtgacgtgcacacatcaagcgagagaagggacatagtcctcacccag
ctgtgacacctacagccacaacaaagaccagcgtgacaagggtgaagtat
cgctcttgtatctagggtcacaagagctgtataattggatttaaggtcca
ctcaaaagaggaa
gaattctgactgtccgggggggacctggaggaacttcactgtgcccctgc
ccccaagcctggaaactagtgaagattaggggaaactgtatgggcctggc
acattatcatacataactgatatgaaagttatatctggtttggttaggga
gtagactggagaggtgggaaggcttcccaaaggggacagtagagtccttg
tgcaaacaaaacgtttgtcactgggtttcactttagcctcaccactgaaa
aaaaatcagactggacacaaagagagcagtgtcactgaaggtgggcggaa
cttattccagagattgtcagtcatcgaaggtgggtggggcttattctaca
acagagctgagcacactgtcatgggtgagggcgggcagaggcaaagggat
cagggaacccctctacatttgagcccccacccccacactgtttttgtagt
ctctagaacaagcagctttagccgaagggctttgtgttcaggtgactgac
aggcctatctggacatgtgaagtgatggtacgtaaagatgtaaagtcctt
ctgtctgtccatgccccctcccacatcccccccccttccacctctcccca
cttgccagtaatcctgtaagatttagttaggagttctagatactaatgac
ctgggctcttcaggttgtcatgtctccatccaggaccagggatctggccc
ttggcccattcctttgaccagtacttcaagtcacatggactccaggattt
acagggctgttgaattatggaggggttggggtccaggctgggtccctcaa
gcctgctaggatttaactggcaaccctagcagtgtaaagagctgggcttc
tgggcatttgtgccggtcaacaagtttccgtcccctggggagtttgaata
tgaccttttggacttcagatacaattagagaattttggagagtgtggatg
gaagataactctgcagtaaattcttgccacataagccagccaactaaaat
tcattcccctgaaactcaagtaaagatggaaggagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126614584_126615496
seq2: B6Ng01-090C20.b_45_955

seq1  GAATTCTCCCTCAGCCTCCTTAAATTGTCTCTAGCTCTTCATCTTGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCAGCCTCCTTAAATTGTCTCTAGCTCTTCATCTTGGAGT  50

seq1  AGGGCCCCATGAGAATGCCTCCATTCATGTTGGCATGTATTAAGATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCCATGAGAATGCCTCCATTCATGTTGGCATGTATTAAGATTTCA  100

seq1  TGAGTGCAGCTTCCCTGTCCTACATCAAAGACACAGCTTGCAGCAGACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCAGCTTCCCTGTCCTACATCAAAGACACAGCTTGCAGCAGACGT  150

seq1  TCTGATCCTCTGCCTCTTATAATCTTTGCTCAGTGTTCTCTTAGATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCTCTGCCTCTTATAATCTTTGCTCAGTGTTCTCTTAGATGTTG  200

seq1  GCTTTGTGTTGTATGTGTATCTGTTGGAGCTAGGCATCCCAGAGTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTTGTATGTGTATCTGTTGGAGCTAGGCATCCCAGAGTCAGCT  250

seq1  GTTCTCTACACATTAACAGGTTATGGCTTTTTGTAGTGGTCTCTGTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTACACATTAACAGGTTATGGCTTTTTGTAGTGGTCTCTGTCTGC  300

seq1  TGCAAAAAAGACATTTCTTTGATGAAGAACGAAAGCTGCACTTATCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAAGACATTTCTTTGATGAAGAACGAAAGCTGCACTTATCTGTG  350

seq1  GATATAAGTAAGCACTTAAAGTGCACTTGGGAATCGTACTAGTTTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAGTAAGCACTTAAAGTGCACTTGGGAATCGTACTAGTTTATAAC  400

seq1  TGTGGCAGTAGTGTGTGCGTTCACTGCAGGTGGGATTGTAAACTGGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGTAGTGTGTGCGTTCACTGCAGGTGGGATTGTAAACTGGTGTA  450

seq1  GGCATTACACAAATCACCGTGGTGAACTCTCAAAAGCTAAAAGAGTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTACACAAATCACCGTGGTGAACTCTCAAAAGCTAAAAGAGTCTCA  500

seq1  ACCATACCCCAACGGTGCCACCTCCTCCTCCACAGACACTTGCTCAGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACCCCAACGGTGCCACCTCCTCCTCCACAGACACTTGCTCAGCCG  550

seq1  TCTTCACTGCTGTTCTATTCAGAATGGAAACAACCTAAATGATCTTCGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTGCTGTTCTATTCAGAATGGAAACAACCTAAATGATCTTCGAC  600

seq1  TGAGGAACGGATCACAAGCGCGTGGTACATATACCTGAGTGAATCCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACGGATCACAAGCGCGTGGTACATATACCTGAGTGAATCCTATT  650

seq1  CAACTGGAAAGAAAAATGAAATGGTGACATTTGCAGGGAAATGGGTGGAA  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAAAG-AAAATGAAATGGTGACATTTGCAGGGAAATGGGTGGAA  699

seq1  CTAAAAGACTACAGAGAGTGA-GGTGACCCAGAACTTAAAGGTAAGACCC  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTAAAAGACTACAGAGAGTGAGGGTGACCCAGAACTTAAAGGTAAGACCC  749

seq1  TGTGCTGAAGACACCACACACGTTGTACACAGGACTTGGA-GGAATCAAA  798
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  TGTGCTGAAGACACCACACACGTTGTACACAGGACTTGGAGGGATTCAAA  799

seq1  CTGGTGCTGATGCTGAAGTCTCCTTCATGGGGATTAGCTCTCATAGTACC  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGGTGCTGATGCTGAAGTCTTCTTCATGGGGATTAGCTCTCATAGTACC  849

seq1  CAAAGGTGACGTGCACAACATCAAGCGAGAGAAGGGAACAATAGTCC-CA  897
      |||| ||||||||||| ||||||||||||||||||||   ||||||| ||
seq2  CAAA-GTGACGTGCAC-ACATCAAGCGAGAGAAGGGA--CATAGTCCTCA  895

seq1  CCCAGCTGTGACACCT  913
      ||||||||||||||||
seq2  CCCAGCTGTGACACCT  911

seq1: chr6_126716072_126717099
seq2: B6Ng01-090C20.g_70_1107 (reverse)

seq1  TCACTCCTTCCATCTTTACATG-GGTTCAAGGGACTGAA-TTTAGTCTGC  48
      ||||||||||||||||||| || | |||| |||| |||| |||||| || 
seq2  TCACTCCTTCCATCTTTACTTGAGTTTCAGGGGAATGAATTTTAGT-TGG  49

seq1  CTGGCTTATGTGGCAAGAATTTTACCTGCAGAGTTATC-TCCATCCACAC  97
      ||||||||||||||||||||||   ||||||||||||| |||||||||||
seq2  CTGGCTTATGTGGCAAGAATTT--ACTGCAGAGTTATCTTCCATCCACAC  97

seq1  TCTCCAAAAATTCTCTAACTGGTATCTG-AGTCCCAAAAGTCATATTCAA  146
      ||||| |||||||||||| | ||||||| ||||| ||| |||||||||||
seq2  TCTCC-AAAATTCTCTAA-TTGTATCTGAAGTCCAAAAGGTCATATTCAA  145

seq1  ACTACCCAGGGGACTGAAACTTG-TGACC-GCAC-AATGACCAG-AGCCC  192
      ||| |||||||||| |||||||| ||||| |||| |||| |||| |||||
seq2  ACTCCCCAGGGGACGGAAACTTGTTGACCGGCACAAATGCCCAGAAGCCC  195

seq1  AGCTCTTTACACTGCTA-GGTTGCCAGTTAAATCCTAGCAGGCTTGAGGG  241
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCTCTTTACACTGCTAGGGTTGCCAGTTAAATCCTAGCAGGCTTGAGGG  245

seq1  ACCCAGCCTGGACCCCA--CCCT-CATAA-TCAACAG-CCTGTAAATCCT  286
      |||||||||||||||||  |||| ||||| ||||||| ||||||||||||
seq2  ACCCAGCCTGGACCCCAACCCCTCCATAATTCAACAGCCCTGTAAATCCT  295

seq1  GGAGT-CATGTGACTTGAAGTACTGGTCAAAGGAATGGGCCAAGGGCCAG  335
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCATGTGACTTGAAGTACTGGTCAAAGGAATGGGCCAAGGGCCAG  345

seq1  ATCCCTGGTCCTGGATGGAGACATGACAACCTGAAGAGCCCAGGTCATTA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGTCCTGGATGGAGACATGACAACCTGAAGAGCCCAGGTCATTA  395

seq1  GTATCTAGAACTCCTAACTAAATCTTACAGGATTACTGGCAAGTGGGGAG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGAACTCCTAACTAAATCTTACAGGATTACTGGCAAGTGGGGAG  445

seq1  AGGTGGAAGGGGGGGGGATGTGGGAGGGGGCATGGACAGACAGAAGGACT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAGGGGGGGGGATGTGGGAGGGGGCATGGACAGACAGAAGGACT  495

seq1  TTACATCTTTACGTACCATCACTTCACATGTCCAGATAGGCCTGTCAGTC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTTACGTACCATCACTTCACATGTCCAGATAGGCCTGTCAGTC  545

seq1  ACCTGAACACAAAGCCCTTCGGCTAAAGCTGCTTGTTCTAGAGACTACAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACACAAAGCCCTTCGGCTAAAGCTGCTTGTTCTAGAGACTACAA  595

seq1  AAACAGTGTGGGGGTGGGGGCTCAAATGTAGAGGGGTTCCCTGATCCCTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGTGGGGGTGGGGGCTCAAATGTAGAGGGGTTCCCTGATCCCTT  645

seq1  TGCCTCTGCCCGCCCTCACCCATGACAGTGTGCTCAGCTCTGTTGTAGAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCCGCCCTCACCCATGACAGTGTGCTCAGCTCTGTTGTAGAA  695

seq1  TAAGCCCCACCCACCTTCGATGACTGACAATCTCTGGAATAAGTTCCGCC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCCACCCACCTTCGATGACTGACAATCTCTGGAATAAGTTCCGCC  745

seq1  CACCTTCAGTGACACTGCTCTCTTTGTGTCCAGTCTGATTTTTTTTCAGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAGTGACACTGCTCTCTTTGTGTCCAGTCTGATTTTTTTTCAGT  795

seq1  GGTGAGGCTAAAGTGAAACCCAGTGACAAACGTTTTGTTTGCACAAGGAC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGCTAAAGTGAAACCCAGTGACAAACGTTTTGTTTGCACAAGGAC  845

seq1  TCTACTGTCCCCTTTGGGAAGCCTTCCCACCTCTCCAGTCTACTCCCTAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTCCCCTTTGGGAAGCCTTCCCACCTCTCCAGTCTACTCCCTAA  895

seq1  CCAAACCAGATATAACTTTCATATCAGTTATGTATGATAATGTGCCAGGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAGATATAACTTTCATATCAGTTATGTATGATAATGTGCCAGGC  945

seq1  CCATACAGTTTCCCCTAATCTTCACTAGTTTCCAGGCTTGGGGGCAGGGG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAGTTTCCCCTAATCTTCACTAGTTTCCAGGCTTGGGGGCAGGGG  995

seq1  CACAGTGAAGTTCCTCCAGGTCCCCCCCGGACAGTCAGAATTC  1028
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAAGTTCCTCCAGGTCCCCCCCGGACAGTCAGAATTC  1038