BAC Information

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BAC

Clone NameB6Ng01-090F02
Chromosome6 (Build37)
Map Location 29,011,923 - 29,211,567
singlet/doubletdoublet
Overlap geneLep, Rbm28, D330027H18Rik, Impdh1
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367
Downstream gene2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090F02.bB6Ng01-090F02.g
ACCDH902654DH902655
length882783
definitionDH902654|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F02, 5' end.DH902655|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,011,923 - 29,012,797)(29,210,785 - 29,211,567)
sequence
gaattctctctccatacatttgccttccagaaatgcagaggttagactat
aaggaaagacagggcactcagatacaccaggcagatcagcgcttgcttcc
catgccctgctctacaaaatactgcatgatcccatctctcctgctgtctg
tgagctctctagatctacaatcatgtctgtgctgacatttcacctaaacc
aaagactaagactccatctgtgtgcgcattgtctttgccctcaggagtac
cacagagttctgcagggaagccacacaataggcataggaagctcagtatt
gggttccttggcaaagacagggcacctagagtgctggaaatggacagaca
tagaatggaaatagacgggttggtggtggggagtcactgggaataacagt
gcacacagcagaggtaagactgaaaggaatcagaactaggtaggcaggga
tacaggagagatgtggaggctttggagggagagaaagacaggcactggag
cactttaagacagcttcttaggtatttctgtggggcaaaagtaaattcta
aaatggcaggccatgcctgcaatctcagcacaagaaagacagaggcagga
gaagaaagagttcacggccagtccggtccatgtgagggcatctcaaaaca
aataaagatgatttttcagagggaagccaccttaggaacatgttagcctg
gtcagcgatgaaaggatgggggaatactttacttattcattcaacaaaaa
ttgaataaatgccctgctctgtgtcaagccctttggtagatgctgaacca
agtgcaggccgtctcttgttagagtgtggggccccttcctctttgagtga
tggctaggagctcccgaccccctttggaccgt
gaattctgtgaaaataaatgttccttgatgtaatgattcttaaacaatta
aaaaattgaggcatgggccaggtgcatgctgtatgttctcatcttggaaa
caatgtaataactgcacaatggtagttccagattaatgcttgattgcaaa
gaaagtttgaagaaattattagaaaattaaatagaaccaataataggacc
ccaagaaagaaaaaaactattgacgttatgaaatgttttgaacatttgag
agtggttcctggataagcaagtatagaatatgtaaaatcttatattagta
aaactaagtcaaaacactgggactcttagaaagtcattgtgtgcaatgtg
cagaagcagaaagctagcaaaactattgagttagggttaacttgattctt
tctggccattgcctggcaactttgtccaggttatttatcattagagcttc
acaagaaaatgcaagtagctgacctcggagctctgtgctctgaagtatat
tatgttaaagtttaaataatgataagtttgcaattattattattttggct
ataggcctgggaatagggaagcttgaaactttgggggacaattgtaattc
ttgattctttgtgggatgcgattattctttttgaatttgacttggcaatg
attatacaatgtctttttttctacctgcttttggagtttcaataaaagac
tggggcaagagaacggcaagagagtgagtagagagcatgcaaagagtgag
tgaggagtgtgaggtgatgtggagagtgaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29011923_29012797
seq2: B6Ng01-090F02.b_46_927

seq1  GAATTCTCTCTCCATACATTTGCCTTCCAGAAATGCAGAGGTTAGACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCATACATTTGCCTTCCAGAAATGCAGAGGTTAGACTAT  50

seq1  AAGGAAAGACAGGGCACTCAGATACACCAGGCAGATCAGCGCTTGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGACAGGGCACTCAGATACACCAGGCAGATCAGCGCTTGCTTCC  100

seq1  CATGCCCTGCTCTACAAAATACTGCATGATCCCATCTCTCCTGCTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTGCTCTACAAAATACTGCATGATCCCATCTCTCCTGCTGTCTG  150

seq1  TGAGCTCTCTAGATCTACAATCATGTCTGTGCTGACATTTCACCTAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTCTAGATCTACAATCATGTCTGTGCTGACATTTCACCTAAACC  200

seq1  AAAGACTAAGACTCCATCTGTGTGCGCATTGTCTTTGCCCTCAGGAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAAGACTCCATCTGTGTGCGCATTGTCTTTGCCCTCAGGAGTAC  250

seq1  CACAGAGTTCTGCAGGGAAGCCACACAATAGGCATAGGAAGCTCAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTTCTGCAGGGAAGCCACACAATAGGCATAGGAAGCTCAGTATT  300

seq1  GGGTTCCTTGGCAAAGACAGGGCACCTAGAGTGCTGGAAATGGACAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTTGGCAAAGACAGGGCACCTAGAGTGCTGGAAATGGACAGACA  350

seq1  TAGAATGGAAATAGACGGGTTGGTGGTGGGGAGTCACTGGGAATAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGAAATAGACGGGTTGGTGGTGGGGAGTCACTGGGAATAACAGT  400

seq1  GCACACAGCAGAGGTAAGACTGAAAGGAATCAGAACTAGGTAGGCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCAGAGGTAAGACTGAAAGGAATCAGAACTAGGTAGGCAGGGA  450

seq1  TACAGGAGAGATGTGGAGGCTTTGGAGGGAGAGAAAGACAGGCACTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGAGATGTGGAGGCTTTGGAGGGAGAGAAAGACAGGCACTGGAG  500

seq1  CACTTTAAGACAGCTTCTTAGGTATTTCTGTGGGGCAAAAGTAAATTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAGACAGCTTCTTAGGTATTTCTGTGGGGCAAAAGTAAATTCTA  550

seq1  AAATGGCAGGCCATGCCTGCAATCTCAGCACAAGAAAGACAGAGGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAGGCCATGCCTGCAATCTCAGCACAAGAAAGACAGAGGCAGGA  600

seq1  GAAGAAAGAGTTCACGGCCAGTCCGGTCCATGTGAGGGCATCTCAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAGTTCACGGCCAGTCCGGTCCATGTGAGGGCATCTCAAAACA  650

seq1  AAGAAAGATGATTTTTCAGAGGGAAGCCACCTTAGGAACATGTTAGCCTG  700
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGATGATTTTTCAGAGGGAAGCCACCTTAGGAACATGTTAGCCTG  700

seq1  GTCAGCGATG-AAGGAT-GGGGAATACTTTACTTATTCATTCAACAAAAA  748
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GTCAGCGATGAAAGGATGGGGGAATACTTTACTTATTCATTCAACAAAAA  750

seq1  TTGAATAAATG-CCTGCTCTGTGTCAGGCCC-TTGGTAGATGCTGAACCA  796
      ||||||||||| |||||||||||||| |||| ||||||||||||||||||
seq2  TTGAATAAATGCCCTGCTCTGTGTCAAGCCCTTTGGTAGATGCTGAACCA  800

seq1  AGTGCAGG-CGTCTCTAG-TAGAGTGTGGTGCCCC-TCCTCTCTGAGTGC  843
      |||||||| ||||||| | |||||||||| ||||| |||||| |||||| 
seq2  AGTGCAGGCCGTCTCTTGTTAGAGTGTGGGGCCCCTTCCTCTTTGAGTG-  849

seq1  ATGGC-AGGAGCTCCAGATCCCCTTTGGACAGT  875
      ||||| ||||||||| || ||||||||||| ||
seq2  ATGGCTAGGAGCTCCCGACCCCCTTTGGACCGT  882

seq1: chr6_29210785_29211567
seq2: B6Ng01-090F02.g_70_852 (reverse)

seq1  TCATTCACTCTCCACATTCACCTCACACTCCTCACTCACTCTTTGCATGC  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCATTCACTCTCCACA-TCACCTCACACTCCTCACTCACTCTTTGCATGC  49

seq1  TCTCTACTCACTCTCTTGCCGTTCTCTTGCCCCAGTCTTTTATTGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTCACTCTCTTGCCGTTCTCTTGCCCCAGTCTTTTATTGAAACT  99

seq1  CCAAAAGCAGGTAGAAAAAAAGACATTGTATAATCATTGCCAAGTCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCAGGTAGAAAAAAAGACATTGTATAATCATTGCCAAGTCAAAT  149

seq1  TC-AAAAGAATAATCGCATCCCACAAAGAATCAAGAATTACAATTGTCCC  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGAATAATCGCATCCCACAAAGAATCAAGAATTACAATTGTCCC  199

seq1  CCAAAGTTTCAAGCTTCCCTATTCCCAGGCCTATAGCCAAAATAATAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTCAAGCTTCCCTATTCCCAGGCCTATAGCCAAAATAATAATA  249

seq1  ATTGCAAACTTATCATTATTTAAACTTTAACATAATATACTTCAGAGCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAACTTATCATTATTTAAACTTTAACATAATATACTTCAGAGCAC  299

seq1  AGAGCTCCGAGGTCAGCTACTTGCATTTTCTTGTGAAGCTCTAATGATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCGAGGTCAGCTACTTGCATTTTCTTGTGAAGCTCTAATGATAA  349

seq1  ATAACCTGGACAAAGTTGCCAGGCAATGGCCAGAAAGAATCAAGTTAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGGACAAAGTTGCCAGGCAATGGCCAGAAAGAATCAAGTTAACC  399

seq1  CTAACTCAATAGTTTTGCTAGCTTTCTGCTTCTGCACATTGCACACAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAATAGTTTTGCTAGCTTTCTGCTTCTGCACATTGCACACAATG  449

seq1  ACTTTCTAAGAGTCCCAGTGTTTTGACTTAGTTTTACTAATATAAGATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAAGAGTCCCAGTGTTTTGACTTAGTTTTACTAATATAAGATTT  499

seq1  TACATATTCTATACTTGCTTATCCAGGAACCACTCTCAAATGTTCAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTCTATACTTGCTTATCCAGGAACCACTCTCAAATGTTCAAAAC  549

seq1  ATTTCATAACGTCAATAGTTTTTTTCTTTCTTGGGGTCCTATTATTGGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAACGTCAATAGTTTTTTTCTTTCTTGGGGTCCTATTATTGGTT  599

seq1  CTATTTAATTTTCTAATAATTTCTTCAAACTTTCTTTGCAATCAAGCATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAATTTTCTAATAATTTCTTCAAACTTTCTTTGCAATCAAGCATT  649

seq1  AATCTGGAACTACCATTGTGCAGTTATTACATTGTTTCCAAGATGAGAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAACTACCATTGTGCAGTTATTACATTGTTTCCAAGATGAGAAC  699

seq1  ATACAGCATGCACCTGGCCCATGCCTCAATTTTTTAATTGTTTAAGAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCATGCACCTGGCCCATGCCTCAATTTTTTAATTGTTTAAGAATC  749

seq1  ATTACATCAAGGAACATTTATTTTCACAGAATTC  783
      ||||||||||||||||||||||||||||||||||
seq2  ATTACATCAAGGAACATTTATTTTCACAGAATTC  783