BAC Information

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BAC

Clone NameB6Ng01-090M04
Chromosome6 (Build37)
Map Location 128,867,676 - 129,055,605
singlet/doubletdoublet
Overlap geneClec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i
Downstream geneKlrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090M04.bB6Ng01-090M04.g
ACCDH902977DH902978
length1,003946
definitionDH902977|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M04, 5' end.DH902978|Mus musculus domesticus DNA, BAC clone: B6Ng01-090M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,054,597 - 129,055,605)(128,867,676 - 128,868,370)
sequence
gaattctatcagaccttcaaagaagacctaataccaatactcttcaaact
attccacaaaatagaaacagagggaatcctacccagttcattctatgaag
ccacagttacactgagtattctcccttggagatgggacagtttctgtcta
atcaggaacttgtcacaatttcctttcatagaggacttcataagagattt
tcttctagttttatcatgtttaatattccaaaaagacgttaaaaatttgt
tgagtacatattacttttagcttcataagatagcatgtacatttaagagg
catttaactactataaattattttgatgacttaaaaaatgtcaatactaa
gttgtaaaatttgaaataaattgtattagtttaataaaaataaaaacata
aaaaatgaagacaatgcaataagaagaaaacattgaaaaaagaaacaggt
ttccatataaaaacaaactcaagctagcgtgctattaacactaaaatttt
actatttatcattccttcatttaaaataacttagttttcaatgactactc
tcagtatccagccatctatgtctcataattttaaaaatggattttaaaat
ggcttaaattcatttaagttgtgagggtctaagaaagtaatttaaggtat
gtgaaagttgtgtaggttgtgaaggtctaagcaagttatttgaggcgtcc
aaatgcaaatgataaaggtctgaggacatgacttaaggtttgtgtagaac
aagatttaaaggtaatatatgattttaagattctaaaggttcagagttta
aacattttaatgaagttctaataagttactaatatatctctggtaatata
ctagctactattatcataatcacagaatcaagttttaaaaatttcctttg
gttgttttctaattagatataggtcgatagatagatggatggatagatag
atagatagatagatagatagatagatagatagatagaaagatgatgattt
gac
gaattcaaataaagttagtgacatagcaagaagaggaaatatgatgcatt
cagttgctggaaactcagtttaggtaaggagtaactggctacatctgtgg
aagcttacatctgaagttgtgtaacatattgtgaaatctgtaacaaatct
cgaagtcttaggtagttaacaaattgccgatgagcaaatataatggtgga
ttacctcaggggtaaggagctaggtctgttttctagctgtcaagctacag
tttccttagctatcaatgtagtcagaaatctggagaagagtaaattataa
tttagaagtatattaattgaaaatgacagagttcatctatagtccactat
ctaaacagttcccagggctctgtggtgtccatagcaacgtgcgtggagtc
aggctgtgaaggccagaagatgaaaagcttttcctctgtggaatacatac
atgtgaaatgagaaattacccaccatgacttaggcaagatgaggcacttg
actctcagtgtatccagttttgtccacagggtagaccaatcctggacagg
gcaatgatggtgttgtgccacaatccaagcaacattttataactatgttc
gttatcatcttggagtcttgggtgggtaactgttagcctttgggagtctg
tctgtcataagcttaaatattaacacattagcagacttctgacaatattg
aaagcagtatctattgtacataatctgagttagacaatttgagtcgttgc
ttcaagtatgcaaggtactttaaaatgtggtctttgctagtgtatgcaat
ggtgtcagcgtttggaggctgattatgggatggatctccaggtatggcag
cctctagatggttcatccttttgtctcagctccaaactcagtctcagtac
agggggacactagggtcaatggtgggagtgggtgggaagggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_129054597_129055605
seq2: B6Ng01-090M04.b_49_1051 (reverse)

seq1  GTCAATATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50
      ||||| ||||||     |||| ||||||||||||||||||||||||||||
seq2  GTCAA-ATCATC-----ATCTTTCTATCTATCTATCTATCTATCTATCTA  44

seq1  TCTATCTATCTATCTATCCATCCATCTATCTATCGACCTATATCTAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCCATCCATCTATCTATCGACCTATATCTAATTA  94

seq1  GAAAACAACCAAAGGAAATTTTTAAAACTTGATTCTGTGATTATGATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAACCAAAGGAAATTTTTAAAACTTGATTCTGTGATTATGATAAT  144

seq1  AGTAGCTAGTATATTACCAGAGATATATTAGTAACTTATTAGAACTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAGTATATTACCAGAGATATATTAGTAACTTATTAGAACTTCAT  194

seq1  TAAAATGTTTAAACTCTGAACCTTTAGAATCTTAAAATCATATATTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTTAAACTCTGAACCTTTAGAATCTTAAAATCATATATTACCT  244

seq1  TTAAATCTTGTTCTACACAAACCTTAAGTCATGTCCTCAGACCTTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTTGTTCTACACAAACCTTAAGTCATGTCCTCAGACCTTTATCA  294

seq1  TTTGCATTTGGACGCCTCAAATAACTTGCTTAGACCTTCACAACCTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTGGACGCCTCAAATAACTTGCTTAGACCTTCACAACCTACAC  344

seq1  AACTTTCACATACCTTAAATTACTTTCTTAGACCCTCACAACTTAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCACATACCTTAAATTACTTTCTTAGACCCTCACAACTTAAATGA  394

seq1  ATTTAAGCCATTTTAAAATCCATTTTTAAAATTATGAGACATAGATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCCATTTTAAAATCCATTTTTAAAATTATGAGACATAGATGGCT  444

seq1  GGATACTGAGAGTAGTCATTGAAAACTAAGTTATTTTAAATGAAGGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGAGAGTAGTCATTGAAAACTAAGTTATTTTAAATGAAGGAATG  494

seq1  ATAAATAGTAAAATTTTAGTGTTAATAGCACGCTAGCTTGAGTTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGTAAAATTTTAGTGTTAATAGCACGCTAGCTTGAGTTTGTTTT  544

seq1  TATATGGAAACCTGTTTCTTTTTTCAATGTTTTCTTCTTATTGCATTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAAACCTGTTTCTTTTTTCAATGTTTTCTTCTTATTGCATTGTC  594

seq1  TTCATTTTTTATGTTTTTATTTTTATTAAACTAATACAATTTATTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTATGTTTTTATTTTTATTAAACTAATACAATTTATTTCAAA  644

seq1  TTTTACAACTTAGTATTGACATTTTTTAAGTCATCAAAATAATTTATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAACTTAGTATTGACATTTTTTAAGTCATCAAAATAATTTATAGT  694

seq1  AGTTAAATGCCTCTTAAATGTACATGCTATCTTATGAAGCTAAAAGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATGCCTCTTAAATGTACATGCTATCTTATGAAGCTAAAAGTAAT  744

seq1  ATGTACTCAACAAATTTTTAACGTCTTTTTGGAATATTAAACATGATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCAACAAATTTTTAACGTCTTTTTGGAATATTAAACATGATAAA  794

seq1  ACTAGAAGAAAATCTCTTATGAAGTCCTCTATGAAAGGAAATTGTGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGAAAATCTCTTATGAAGTCCTCTATGAAAGGAAATTGTGACAA  844

seq1  GTTCCTGATTAGACAGAAACTGTCCCATCTCCAAGGGAGAATACTCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGATTAGACAGAAACTGTCCCATCTCCAAGGGAGAATACTCAGTG  894

seq1  TAACTGTGGCTTCATAGAATGAACTGGGTAGGATTCCCTCTGTTTCTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGGCTTCATAGAATGAACTGGGTAGGATTCCCTCTGTTTCTATT  944

seq1  TTGTGGAATAGTTTGAAGAGTATTGGTATTAGGTCTTCTTTGAAGGTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAATAGTTTGAAGAGTATTGGTATTAGGTCTTCTTTGAAGGTCTG  994

seq1  ATAGAATTC  1009
      |||||||||
seq2  ATAGAATTC  1003

seq1: chr6_128867676_128868370
seq2: B6Ng01-090M04.g_321_1014

seq1  TCCTTAGCTATCAATGTAGTCAGAAATCTGGAGAAGAGTAAATTATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGCTATCAATGTAGTCAGAAATCTGGAGAAGAGTAAATTATAATT  50

seq1  TAGAAGTATATTAATTGAAAATGACAGAGTTCATCTATAGTCCACTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTATATTAATTGAAAATGACAGAGTTCATCTATAGTCCACTATCT  100

seq1  AAACAGTTCCCAGGGCTCTGTGGTGTCCATAGCAACGTGCGTGGAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTCCCAGGGCTCTGTGGTGTCCATAGCAACGTGCGTGGAGTCAG  150

seq1  GCTGTGAAGGCCAGAAGATGAAAAGCTTTTCCTCTGTGGAATACATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAGGCCAGAAGATGAAAAGCTTTTCCTCTGTGGAATACATACAT  200

seq1  GTGAAATGAGAAATTACCCACCATGACTTAGGCAAGATGAGGCACTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGAGAAATTACCCACCATGACTTAGGCAAGATGAGGCACTTGAC  250

seq1  TCTCAGTGTATCCAGTTTTGTCCACAGGGTAGACCAATCCTGGACAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTATCCAGTTTTGTCCACAGGGTAGACCAATCCTGGACAGGGC  300

seq1  AATGATGGTGTTGTGCCACAATCCAAGCAACATTTTATAACTATGTTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGTGTTGTGCCACAATCCAAGCAACATTTTATAACTATGTTCGT  350

seq1  TATCATCTTGGAGTCTTGGGTGGGTAACTGTTAGCCTTTGGGAGTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTGGAGTCTTGGGTGGGTAACTGTTAGCCTTTGGGAGTCTGTC  400

seq1  TGTCATAAGCTTAAATATTAACACATTAGCAGACTTCTGACAATATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAAGCTTAAATATTAACACATTAGCAGACTTCTGACAATATTGAA  450

seq1  AGCAGTATCTATTGTACATAATCTGAGTTAGACAATTTGAGTCGTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATCTATTGTACATAATCTGAGTTAGACAATTTGAGTCGTTGCTT  500

seq1  CAAGTATGCAAGGTACTTTAAAATGTGGTCTTTGCTAGTGTATGCAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGCAAGGTACTTTAAAATGTGGTCTTTGCTAGTGTATGCAATGG  550

seq1  TGTCAGCGTTTGGAGGCTGATTATGGGATGGATCTCCAGGTATGGCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCGTTTGGAGGCTGATTATGGGATGGATCTCCAGGTATGGCAGCC  600

seq1  TCTAGATGGTTCATCCTTTTGTCTCAGCTCCAAACTCAGTCTCAGTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGGTTCATCCTTTTGTCTCAGCTCCAAACTCAGTCTCAGTACAG  650

seq1  GGGGACACCAGGGTCAAAAGGTGGGAGTGGGTGGGAAGGGAGTGG  695
      |||||||| |||||| || ||||||||||||||||||||||||||
seq2  GGGGACACTAGGGTC-AATGGTGGGAGTGGGTGGGAAGGGAGTGG  694