BAC Information

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BAC

Clone NameB6Ng01-090N02
Chromosome6 (Build37)11 (Build37)
Map Location 18,835,442 - 18,835,96826,514,573 - 26,515,794
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090N02.bB6Ng01-090N02.g
ACCDH903019DH903020
length9731,208
definitionDH903019|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N02, 5' end.DH903020|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(26,514,573 - 26,515,794)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
attctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtcattcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcatgcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttaacata
tagatctttcacttccttagttagagtcactccgagatatttatattatt
tgtgactattgagaaggtgtgtt
gaattctcagtggactccaatgggtcttccttcatgctgtgagtcattga
atagctcagattagcatcttcaattctctagtgtgataggatgcaaatac
ccaaacatcaaagcagaaaaattgttaacagactaagaaaccttaagtct
tcatggcatggtatagctatttaatgtatcattgtttttattaaagcaat
ttaaaagcaaaattatataactatggttttgctaaaaataaaccactaaa
acatctacattcatatttcttaagtagtcaacaaagatttctttttgaca
tcagcctataataaaaatgaagctataaaatggccatgtagtcagttaca
gccagtacattctataaagcaaacataagcacactcattctttcaaaatg
gtcatatgccaatatgaaatgcctcattcatgacctccatataatatggt
aacctgctgacttcccaagcttgtatatttgaaggaagagttattgtagg
tatggagtcataatagctttctttagctaaatatagaagatattttcaac
gatggaaattagtaaaatatacttaaaatatgcaggatactaatcttgcc
ctcatacattctattggccactcttgctggcagattactagtaagctcaa
cattccaaaggcttccctttatcgtcccagaagagaatgcatcatgagca
gttttcactttttacataaatatgatggaatgaaacaagacagggtacac
tgaaagacagaaatctcaatgaagctggtgtgtgaaaatcttctatagag
acacaatttaccttgtttacatacttttatagaacactattaatgtatgt
ggaatggacacctgtgatggaatgacaaggactgtgacaaactgatgaat
atcttgtacctcttataaatttagtaaacaggagtagagatttagggtaa
gagttctcaaggtggaaaaatttcttggaaattcaacatcagtggagcct
gtgatctgttaaattgtcaacatatgctacatgttcctagcagatacatt
ttttatttcagagccacccatttgcaacttggtctttgaataaccttaaa
ttcaagtaaaatattaaggcatggaacttaagtccagctaatgcctccag
gacatgctcagccataacataacaccgtcattgatatagaatgccgtgct
gtgcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-090N02.b_48_575 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAATGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAATGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACTGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr11_26514573_26515794
seq2: B6Ng01-090N02.g_70_1277

seq1  GAATTCTCAGTGGACTCCAATGGGTCTTCCTTCATGCTGTGAGTCATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGGACTCCAATGGGTCTTCCTTCATGCTGTGAGTCATTGA  50

seq1  ATAGCTCAGATTAGCATCTTCAATTCTCTAGTGTGATAGGATGCAAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAGATTAGCATCTTCAATTCTCTAGTGTGATAGGATGCAAATAC  100

seq1  CCAAACATCAAAGCAGAAAAATTGTTAACAGACTAAGAAACCTTAAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATCAAAGCAGAAAAATTGTTAACAGACTAAGAAACCTTAAGTCT  150

seq1  TCATGGCATGGTATAGCTATTTAATGTATCATTGTTTTTATTAAAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCATGGTATAGCTATTTAATGTATCATTGTTTTTATTAAAGCAAT  200

seq1  TTAAAAGCAAAATTATATAACTATGGTTTTGCTAAAAATAAACCACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCAAAATTATATAACTATGGTTTTGCTAAAAATAAACCACTAAA  250

seq1  ACATCTACATTCATATTTCTTAAGTAGTCAACAAAGATTTCTTTTTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACATTCATATTTCTTAAGTAGTCAACAAAGATTTCTTTTTGACA  300

seq1  TCAGCCTATAATAAAAATGAAGCTATAAAATGGCCATGTAGTCAGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTATAATAAAAATGAAGCTATAAAATGGCCATGTAGTCAGTTACA  350

seq1  GCCAGTACATTCTATAAAGCAAACATAAGCACACTCATTCTTTCAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTACATTCTATAAAGCAAACATAAGCACACTCATTCTTTCAAAATG  400

seq1  GTCATATGCCAATATGAAATGCCTCATTCATGACCTCCATATAATATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGCCAATATGAAATGCCTCATTCATGACCTCCATATAATATGGT  450

seq1  AACCTGCTGACTTCCCAAGCTTGTATATTTGAAGGAAGAGTTATTGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTGACTTCCCAAGCTTGTATATTTGAAGGAAGAGTTATTGTAGG  500

seq1  TATGGAGTCATAATAGCTTTCTTTAGCTAAATATAGAAGATATTTTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTCATAATAGCTTTCTTTAGCTAAATATAGAAGATATTTTCAAC  550

seq1  GATGGAAATTAGTAAAATATACTTAAAATATGCAGGATACTAATCTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAATTAGTAAAATATACTTAAAATATGCAGGATACTAATCTTGCC  600

seq1  CTCATACATTCTATTGGCCACTCTTGCTGGCAGATTACTAGTAAGCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACATTCTATTGGCCACTCTTGCTGGCAGATTACTAGTAAGCTCAA  650

seq1  CATTCCAAAGGCTTCCCTTTATCGTCCCAGAAGAGAATGCATCATGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAAAGGCTTCCCTTTATCGTCCCAGAAGAGAATGCATCATGAGCA  700

seq1  GTTTTCACTTTTTACATAAATATGATGGAATGAAACAAGACAGGGTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACTTTTTACATAAATATGATGGAATGAAACAAGACAGGGTACAC  750

seq1  TGAAAGACAGAAATCTCAATGAAGCTGGTGTGTGAAAATCTTCTATAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACAGAAATCTCAATGAAGCTGGTGTGTGAAAATCTTCTATAGAG  800

seq1  ACACAATTTACCTTGTTTACATACTTTTATAGAACACTAATTAATGTATG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACACAATTTACCTTGTTTACATACTTTTATAGAACACT-ATTAATGTATG  849

seq1  TGGAATGGACACCTGTGATGGAATGACAAGGACTGTGACAAACTGATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGACACCTGTGATGGAATGACAAGGACTGTGACAAACTGATGAA  899

seq1  TATCTTGTACCTCTTATAAATTTAGTAAACAGGAGTAGAGATATAGGGTA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATCTTGTACCTCTTATAAATTTAGTAAACAGGAGTAGAGATTTAGGGTA  949

seq1  AGAGTTCTCAA-GTGGAAAGATTTCTTGGAAATTCAACATCAGTGGAGCC  999
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  AGAGTTCTCAAGGTGGAAAAATTTCTTGGAAATTCAACATCAGTGGAGCC  999

seq1  TGTGATCTGTTAAATTGGTCAACATATGCTACATGTTCCTAGCAGATACA  1049
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGATCTGTTAAATT-GTCAACATATGCTACATGTTCCTAGCAGATACA  1048

seq1  -TTTTTATTTCAGAAGCCACCCATTTGGCAACTT-GTCTTTGATAAACTT  1097
       |||||||||||| |||||||||||| ||||||| ||||||||  ||| |
seq2  TTTTTTATTTCAG-AGCCACCCATTT-GCAACTTGGTCTTTGAATAACCT  1096

seq1  TACATTCAAGTAAAATATTTAAAGGCCAATGGACATTTTAAGTCCAGCTC  1147
      || ||||||||||||||||  |||||  ||||  |  |||||||||||| 
seq2  TAAATTCAAGTAAAATATT--AAGGC--ATGG--AACTTAAGTCCAGCTA  1140

seq1  ATGCCTTCAGGACATGCTCAAGCTCCATCACCTATATACCACTTCCATTT  1197
      |||||| |||||||||||||    |||| ||    ||| |||   || ||
seq2  ATGCCTCCAGGACATGCTCA---GCCATAAC----ATAACACCGTCA-TT  1182

seq1  GATAATAGATTGC--TGCTGTGCAAAT  1222
      ||| ||||| |||  ||||||||||||
seq2  GAT-ATAGAATGCCGTGCTGTGCAAAT  1208