BAC Information

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BAC

Clone NameB6Ng01-090N14
Chromosome6 (Build37)3 (Build37)
Map Location 105,594,017 - 105,595,17415,158,412 - 15,159,331
singlet/doubletsingletsinglet
Overlap geneLOC100043350
Upstream geneCntn6, LOC384470, LOC100043716
Downstream geneCntn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090N14.bB6Ng01-090N14.g
ACCDH903039DH903040
length1,1351,013
definitionDH903039|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N14, 5' end.DH903040|Mus musculus domesticus DNA, BAC clone: B6Ng01-090N14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,594,017 - 105,595,174)(15,158,412 - 15,159,331)
sequence
gaattctctctttcacactaccctctcctggaatgagggaatgagtattg
taataactgagagacacttttgaaaattaagcaaaataaaattaattcct
gatctatatatgctatatagtaaaatagaagatagatattatacaaacta
aagctttatttctatttgaaaggaaagcagaaggacaagctatatcgaac
tgcaaccagagatgggttgcttatgtaaggaaagagcactgagcaacggt
gcctggaaactccgtgttctctactgatttcaaaattagctacatgttct
gtttttgtttgagtcattagaccatgtctccggcaaataatttcacaaga
gatctatttggattaaaaatgcatcctgatgacccttttcattgcattga
acagccgcattagtctctgtatgttccttcccagaaagcttataatggga
taaatgctatttacagcaactgcctctgaagagctgaaatacacctccaa
tctgttcttttgcaaagataaatattgatatctcagatctaagtcaacca
ataatccagaaacttttctcaagatttatttatttttattttatatgtac
aagtgttttggctacatgtctataagggcaccatatgcatgaagtctatg
aaagccagaagagaggattggatctcctggaacttaaattagatatgact
ttgagccaccatgtacatgttgaagctgaactaaggtctgctgaaagagt
tgaaagtatccataaccaccgagccatattgctgactttaacatggccgc
cattgtatcacactgacttttttgtcatttaccatgttcaatggtataac
accaggtttccaagtgtcatgtctgaacgtcatggatggtattttccctt
ggatcacaatgtccttacactcgaatctttcttaagccctataaagtatg
gatttttgtttttgttttttagattcctggttagagtatttctatattca
aacgagatcaagagaaacaattggataggaagaagtcgactgtattattg
gtgatatgtgatagttacttaactgaccccaaattccacaagaactctaa
acttgatgaatacctcagcagtagctggatataaa
gaattccaagagatcttcaagactttacctcccaacttctgggattaaag
gtgtgtatcatcatgccctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgaaaatattgaaagaaagcacgtggatccatgcactagactaatg
cgggaatggaacgcaggaatgaaaaattactgtatgggtagggaacgcta
gactccaggaggagagcttccttgaaactcttttgcctcatgagtgactt
ttaagcttttcagcttgtccagttgactcgaccggagagcggagagcgta
gcaagtgggggtttgggctgcccagacaaggtcagagaagaagtcctgct
ggtaaagtgactcacccagtttgttcagagctcagagagctatctggaca
atagtagactgagagtttatttagcagagtccaacatcatggttgctctt
gtgacaggtggaatacagcagaagggttgggtgggatatctgtacttaga
ggatatcaggacctggatttttaaaattatcttattccatcttttggacc
gatcactcagaagccatatccaatattgtaaggtctgtggagctctttgt
gtggaggctacagacaacacaatacagtagctatataaaagaaccatctg
ggaattggatccttcatgcctttttgtacatcttgcaattacattgtaat
gcccagaaagagtaaaccagaccagaagagtaagctgttcccaggctttc
aactctcagaaaacatgtcatgcaataaatgttgtttgtgtttcttttga
catgttaaaggacaacagtattatctttctttcttttttgtcccaatgct
gacattgtgtcgactctcttggattttgtagtcttagtcctgcaaaagta
cacaccattgagaaataaaaatgccaaggtctgaaatagacatttaaaga
ctatcagctgtagtaacatgaacattttattaagctgaaacattttagaa
cagaaagttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_105594017_105595174
seq2: B6Ng01-090N14.b_45_1179 (reverse)

seq1  TTTATATCAAGCTACTTTGCTGAAGTTATTTATCAGGTTTAGGAGTTCTC  50
      |||||||| ||||||  ||||| || |||| |||| ||||| ||||  ||
seq2  TTTATATCCAGCTAC--TGCTG-AGGTATTCATCAAGTTTA-GAGT--TC  44

seq1  TGGTGGAAATTTGGGGGTCACTTAAGTATACTATCACATTATCTACAAAT  100
      | ||||||  || ||||||| ||||||| ||||||||| |||| || |||
seq2  TTGTGGAA--TTTGGGGTCAGTTAAGTA-ACTATCACA-TATC-ACCAAT  89

seq1  AATTACAGTTTGACTTCTTCCTTTCCAATTTGTATCTCTTTGATCTCCTT  150
      || ||||| | ||||||||||| ||||| |||| |||| ||||||| | |
seq2  AA-TACAG-TCGACTTCTTCCTATCCAA-TTGTTTCTC-TTGATCT-CGT  134

seq1  TTGTATATTAGAAATACTCTAACCAAGAAATCTAAAAAAACAAAAACAAA  200
      ||| ||| |||||||||||||||| || ||||| ||||||||||||||||
seq2  TTGAATA-TAGAAATACTCTAACC-AGGAATCT-AAAAAACAAAAACAAA  181

seq1  AATCCATACTTTTATAGGGCTTAAAGAAAGATTCTGAGTGTAAGGACATT  250
      ||||||||| |||||||||||| ||||||||||| |||||||||||||||
seq2  AATCCATAC-TTTATAGGGCTT-AAGAAAGATTC-GAGTGTAAGGACATT  228

seq1  GGTGATCCAAAGGAAAATACCATCCATGACCTTCAGACATGACACTTGGA  300
       ||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  -GTGATCCAAGGGAAAATACCATCCATGACGTTCAGACATGACACTTGGA  277

seq1  AACCTGGTGTTATACCATTGAACATGGTAAATGACAAAAAAGTCAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTGTTATACCATTGAACATGGTAAATGACAAAAAAGTCAGTGTG  327

seq1  ATACAATGGCGGCCATGTTAAAGTCAGCAATATGGCTCGGTGGTTATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGGCGGCCATGTTAAAGTCAGCAATATGGCTCGGTGGTTATGGA  377

seq1  TACTTTCAACTCTTTCAGCAGACCTTAGTTCAGCTTCAACATGTACATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCAACTCTTTCAGCAGACCTTAGTTCAGCTTCAACATGTACATGG  427

seq1  TGGCTCAAAGTCATATCTAATTTAAGTTCCAGGAGATCCAATCCTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAAAGTCATATCTAATTTAAGTTCCAGGAGATCCAATCCTCTCTT  477

seq1  CTGGCTTTCATAGACTTCATGCATATGGTGCCCTTATAGACATGTAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTCATAGACTTCATGCATATGGTGCCCTTATAGACATGTAGCCA  527

seq1  AAACACTTGTACATATAAAATAAAAATAAATAAATCTTGAGAAAAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTGTACATATAAAATAAAAATAAATAAATCTTGAGAAAAGTTTC  577

seq1  TGGATTATTGGTTGACTTAGATCTGAGATATCAATATTTATCTTTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATTGGTTGACTTAGATCTGAGATATCAATATTTATCTTTGCAAA  627

seq1  AGAACAGATTGGAGGTGTATTTCAGCTCTTCAGAGGCAGTTGCTGTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATTGGAGGTGTATTTCAGCTCTTCAGAGGCAGTTGCTGTAAAT  677

seq1  AGCATTTATCCCATTATAAGCTTTCTGGGAAGGAACATACAGAGACTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATCCCATTATAAGCTTTCTGGGAAGGAACATACAGAGACTAAT  727

seq1  GCGGCTGTTCAATGCAATGAAAAGGGTCATCAGGATGCATTTTTAATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTGTTCAATGCAATGAAAAGGGTCATCAGGATGCATTTTTAATCCA  777

seq1  AATAGATCTCTTGTGAAATTATTTGCCGGAGACATGGTCTAATGACTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATCTCTTGTGAAATTATTTGCCGGAGACATGGTCTAATGACTCAA  827

seq1  ACAAAAACAGAACATGTAGCTAATTTTGAAATCAGTAGAGAACACGGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAGAACATGTAGCTAATTTTGAAATCAGTAGAGAACACGGAGT  877

seq1  TTCCAGGCACCGTTGCTCAGTGCTCTTTCCTTACATAAGCAACCCATCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCACCGTTGCTCAGTGCTCTTTCCTTACATAAGCAACCCATCTC  927

seq1  TGGTTGCAGTTCGATATAGCTTGTCCTTCTGCTTTCCTTTCAAATAGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCAGTTCGATATAGCTTGTCCTTCTGCTTTCCTTTCAAATAGAAA  977

seq1  TAAAGCTTTAGTTTGTATAATATCTATCTTCTATTTTACTATATAGCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTAGTTTGTATAATATCTATCTTCTATTTTACTATATAGCATA  1027

seq1  TATAGATCAGGAATTAATTTTATTTTGCTTAATTTTCAAAAGTGTCTCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCAGGAATTAATTTTATTTTGCTTAATTTTCAAAAGTGTCTCTC  1077

seq1  AGTTATTACAATACTCATTCCCTCATTCCAGGAGAGGGTAGTGTGAAAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTACAATACTCATTCCCTCATTCCAGGAGAGGGTAGTGTGAAAGA  1127

seq1  GAGAATTC  1158
      ||||||||
seq2  GAGAATTC  1135

seq1: chr3_15158412_15159331
seq2: B6Ng01-090N14.g_172_1079 (reverse)

seq1  TGAAAACTTTCTGTTCTTAAAATGTTTCTCGCTTTAATAAAAGTGTTCAT  50
      |||||||||||||||| |||||||||||  || ||||||||| |||||||
seq2  TGAAAACTTTCTGTTC-TAAAATGTTTC-AGC-TTAATAAAA-TGTTCAT  46

seq1  GTTACCTACAGCTGATAGTCTTTTAAATGTCTAATTTCAGACCTTGGCAT  100
      |||| ||||||||||||||| ||||||||||| |||||||||||||||||
seq2  GTTA-CTACAGCTGATAGTC-TTTAAATGTCT-ATTTCAGACCTTGGCAT  93

seq1  TTTTTATTTTCTCCATTGGTTGTGTACTTTTGCAGGACTAAGACTACAAA  150
      ||||   |||||| ||  | ||||||||||||||||||||||||||||||
seq2  TTTT--ATTTCTCAAT--GGTGTGTACTTTTGCAGGACTAAGACTACAAA  139

seq1  ATCCAAGAGAGTCAACACAATGTCAGCATTGGGACAAAAAAGAAAGAAAG  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAGAGTCGACACAATGTCAGCATTGGGACAAAAAAGAAAGAAAG  189

seq1  ATAATACTGTTGTCCTTTAACATGTCAAAAGAAACACAAAACAAACATTT  250
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  ATAATACTGTTGTCCTTTAACATGTCAAAAGAAACACAAA--CAACATTT  237

seq1  ATTGCATGACATGTTTTCTGAGAGTTGAAAGCCTGGGAACAGCTTACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGACATGTTTTCTGAGAGTTGAAAGCCTGGGAACAGCTTACTCT  287

seq1  TCTGGTCTGGTTTACTCTTTCTGGGCATTACAATGTAATTGCAAGATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTGGTTTACTCTTTCTGGGCATTACAATGTAATTGCAAGATGTA  337

seq1  C-AAAAGGCATGAAGGATCCAATTCCCAGATGGTTCTTTTATATAGCTAC  399
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGCATGAAGGATCCAATTCCCAGATGGTTCTTTTATATAGCTAC  387

seq1  TGTATTGTGTTGTCTGTAGCCTCCACACAAAGAGCTCCACAGACCTTACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTGTTGTCTGTAGCCTCCACACAAAGAGCTCCACAGACCTTACA  437

seq1  ATATTGGATATGGCTTCTGAGTGATCGGTCCAAAAGATGGAATAAGATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGATATGGCTTCTGAGTGATCGGTCCAAAAGATGGAATAAGATAA  487

seq1  TTTTAAAAATCCAGGTCCTGATATCCTCTAAGTACAGATATCCCACCCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATCCAGGTCCTGATATCCTCTAAGTACAGATATCCCACCCAA  537

seq1  CCCTTCTGCTGTATTCCACCTGTCACAAGAGCAACCATGATGTTGGACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCTGTATTCCACCTGTCACAAGAGCAACCATGATGTTGGACTC  587

seq1  TGCTAAATAAACTCTCAGTCTACTATTGTCCAGATAGCTCTCTGAGCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATAAACTCTCAGTCTACTATTGTCCAGATAGCTCTCTGAGCTCT  637

seq1  GAACAAACTGGGTGAGTCACTTTACCAGCAGGACTTCTTCTCTGACCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACTGGGTGAGTCACTTTACCAGCAGGACTTCTTCTCTGACCTTG  687

seq1  TCTGGGCAGCCCAAACCCCCACTTGCTACGCTCTCCGCTCTCCGGTCGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAGCCCAAACCCCCACTTGCTACGCTCTCCGCTCTCCGGTCGAG  737

seq1  TCAACTGGACAAGCTGAAAAGCTTAAAAGTCACTCATGAGGCAAAAGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGGACAAGCTGAAAAGCTTAAAAGTCACTCATGAGGCAAAAGAGT  787

seq1  TTCAAGGAAGCTCTCCTCCTGGAGTCTAGCGTTCCCTACCCATACAGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAAGCTCTCCTCCTGGAGTCTAGCGTTCCCTACCCATACAGTAA  837

seq1  TTTTTCATTCCTGCGTTCCATTCCCGCATTAGTCTAGTGCATGGATCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTCCTGCGTTCCATTCCCGCATTAGTCTAGTGCATGGATCCAC  887

seq1  GTGCTTTCTTTCAATATTTTC  920
      |||||||||||||||||||||
seq2  GTGCTTTCTTTCAATATTTTC  908