BAC Information

Click to search

BAC

Clone NameB6Ng01-091A09
Chromosome6 (Build37)
Map Location 61,696,095 - 61,848,894
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091A09.bB6Ng01-091A09.g
ACCDH903169DH903170
length1,0681,136
definitionDH903169|Mus musculus domesticus DNA, BAC clone: B6Ng01-091A09, 5' end.DH903170|Mus musculus domesticus DNA, BAC clone: B6Ng01-091A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,847,819 - 61,848,894)(61,696,095 - 61,697,241)
sequence
gaattctttcgaaattgaacaaattttaaatattttcttgatcaaagttt
aacagaaccccatggatttgtttgtttgtttctgcagcaattaactggga
aattataacatttataaatatatgcatgcggaaagaatcatgtagatggg
agactgttctgaatatcagtgagaagctgctattactcttaaattatcca
cgcatgcacggacatgctttgaaatgccaaataaggaaacataaaaccca
ctttaccattaaaataaagcacttatgtaaaagcagacaaataaacaaat
taggactcggtctttcttacttcatttagatttcattacccaatatgcag
cagtgtcagctagcatacccaaggcaagattgtaaatatttgccaaagca
tattttcgtgaataatgaactcagatgcagatctcaggggggactatgtc
agtcatgcagacaatgtctgctcatcctcagtagcttgggcagcctccac
acggctgcctgagcacctgcatgcacgggagggattttggagagcagaat
atatagaagcatcataattcatgtgggctgacacaagttgttttgttctt
cattaaaacagctggaatttattttgttgaaaagtaaaacaaaaatttta
tgtaggaaaatctgtcctgcttatttggagagacacattcaagtgctttt
tctttcttttcctttaacacagagatgcctgtaacacctggttgctgtca
tgtcatacagaagttatgcaaatgatgtcaatgtccatatcaggggatct
tttgggcaaagtcatgggatttctttctttctaattatctccaagtaatg
ggtgtctcttccataattagaactgagcatcagaaataagttgtttgtca
aaatttctctaatataccttagaataagatgctagttgatagagggaaat
taataacctggaacatacaaaacaaattcattaataatttgccacttctc
agaatgcagaattgtcaccaaatgtttaatatagatgtgtgtcatcttcg
tgttcatatggtgttgca
gaattcccttctctgacaagaaatcatggatatgtttgaggacaagattg
acaatgagcacaaaagtcaatagtaaataaaaatgcttcatatatttctt
tgattcaatgtggtttagaaaaattttatattagacttattatttagcat
cattctcccttttgcctgtgttttgagtattctagaatttttactgtgtg
ttactatcactcacattgtgaagatgaggctcgagagccccatttagtgt
tattacagggctctacatgtgtgtcagactcccactcttcctagcagcca
tgcaaacccttaagcagaaagcatgtcccttctcctgctggttctggctg
tgccttccccagtgaatggatctgggcttcaagtcctcagttggggcctt
cttcaattggtgcattgtctgctgtcccttttgtgcttcctctcttacag
tttgccagtttgaatattgctctcttttcccattaaaaatataatgactt
gtgtcagagcctgcctggaacaactaattgctatgctgctaccatctatg
aaaataatccattaacttcccaccaacgtcttatttaagattttttttta
tgtaaactcagtttaaatacaaaatgagtttcctaacttttaactaatta
ttgtttgctaagtggacagctttgttaaagcttctgatatttttttctac
caaagaaattagttagacattttctttttatactcaaactctaatttctt
aatttatgtgtagaataatatgagtacactctaagagaggacaaacaaca
ttctgttttctatccgtttgtctgaccaatgttcatttagtctataacaa
tgactataattgtgttgaatctgagtcaatagtgttgcagtttcttaaat
gttagagctaataacataaaaatgtgttactatatactttagtactcttg
agacttagccaagtctttccagatctagtattttggagccatttgcaact
ccagtgttattatgcatgagatgtccctaaaacataataaccaccatact
acctgtattagttattcccctgtcctgtgactgaaataaatccacgagct
gaggatttttttgctctagttccaggtattgtccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61847819_61848894
seq2: B6Ng01-091A09.b_45_1112 (reverse)

seq1  TGCACACA-CATATGAACACGAAGATAGACACACATCTATATTTAAAACA  49
      |||| ||| ||||||||||||||||| ||||||||||||||||  |||||
seq2  TGCA-ACACCATATGAACACGAAGAT-GACACACATCTATATT--AAACA  46

seq1  TATTGGTGACAATTCTGCATTCTGAGAAGTGGCAAATTATTTAATTGAAT  99
      | |||||||||||||||||||||||||||||||||||||||  | |||| 
seq2  T-TTGGTGACAATTCTGCATTCTGAGAAGTGGCAAATTATT--AATGAA-  92

seq1  TTTGTTTTGTATTGTTCCAGGTTATTAATTTCCCTCTATCAACTAGCATC  149
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTA-TGTTCCAGGTTATTAATTTCCCTCTATCAACTAGCATC  141

seq1  TTATTCTAAGGTATATTAGAGAAATTTTGACAAACAACTTATTTCTGATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAAGGTATATTAGAGAAATTTTGACAAACAACTTATTTCTGATG  191

seq1  CTCAGTTCTAATTATGGAAGAGACACCCATTACTTGGAGATAATTAGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCTAATTATGGAAGAGACACCCATTACTTGGAGATAATTAGAAA  241

seq1  GAAAGAAATCCCATGACTTTGCCCAAAAGATCCCCTGATATGGACATTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATCCCATGACTTTGCCCAAAAGATCCCCTGATATGGACATTGA  291

seq1  CATCATTTGCATAACTTCTGTATGACATGACAGCAACCAGGTGTTACAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTGCATAACTTCTGTATGACATGACAGCAACCAGGTGTTACAGG  341

seq1  CATCTCTGTGTTAAAGGAAAAGAAAGAAAAAGCACTTGAATGTGTCTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTGTTAAAGGAAAAGAAAGAAAAAGCACTTGAATGTGTCTCTC  391

seq1  CAAATAAGCAGGACAGATTTTCCTACATAAAATTTTTGTTTTACTTTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGCAGGACAGATTTTCCTACATAAAATTTTTGTTTTACTTTTCA  441

seq1  ACAAAATAAATTCCAGCTGTTTTAATGAAGAACAAAACAACTTGTGTCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAATTCCAGCTGTTTTAATGAAGAACAAAACAACTTGTGTCAG  491

seq1  CCCACATGAATTATGATGCTTCTATATATTCTGCTCTCCAAAATCCCTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGAATTATGATGCTTCTATATATTCTGCTCTCCAAAATCCCTCC  541

seq1  CGTGCATGCAGGTGCTCAGGCAGCCGTGTGGAGGCTGCCCAAGCTACTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATGCAGGTGCTCAGGCAGCCGTGTGGAGGCTGCCCAAGCTACTGA  591

seq1  GGATGAGCAGACATTGTCTGCATGACTGACATAGTCCCCCCTGAGATCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGCAGACATTGTCTGCATGACTGACATAGTCCCCCCTGAGATCTG  641

seq1  CATCTGAGTTCATTATTCACGAAAATATGCTTTGGCAAATATTTACAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGTTCATTATTCACGAAAATATGCTTTGGCAAATATTTACAATC  691

seq1  TTGCCTTGGGTATGCTAGCTGACACTGCTGCATATTGGGTAATGAAATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGGGTATGCTAGCTGACACTGCTGCATATTGGGTAATGAAATCT  741

seq1  AAATGAAGTAAGAAAGACCGAGTCCTAATTTGTTTATTTGTCTGCTTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGTAAGAAAGACCGAGTCCTAATTTGTTTATTTGTCTGCTTTTA  791

seq1  CATAAGTGCTTTATTTTAATGGTAAAGTGGGTTTTATGTTTCCTTATTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTGCTTTATTTTAATGGTAAAGTGGGTTTTATGTTTCCTTATTTG  841

seq1  GCATTTCAAAGCATGTCCGTGCATGCGTGGATAATTTAAGAGTAATAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAAAGCATGTCCGTGCATGCGTGGATAATTTAAGAGTAATAGCA  891

seq1  GCTTCTCACTGATATTCAGAACAGTCTCCCATCTACATGATTCTTTCCGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCACTGATATTCAGAACAGTCTCCCATCTACATGATTCTTTCCGC  941

seq1  ATGCATATATTTATAAATGTTATAATTTCCCAGTTAATTGCTGCAGAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATATTTATAAATGTTATAATTTCCCAGTTAATTGCTGCAGAAAC  991

seq1  AAACAAACAAATCCATGGGGTTCTGTTAAACTTTGATCAAGAAAATATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAATCCATGGGGTTCTGTTAAACTTTGATCAAGAAAATATTT  1041

seq1  AAAATTTGTTCAATTTCGAAAGAATTC  1076
      |||||||||||||||||||||||||||
seq2  AAAATTTGTTCAATTTCGAAAGAATTC  1068

seq1: chr6_61696095_61697241
seq2: B6Ng01-091A09.g_67_1202

seq1  GAATTCCCTTCTCTGACAAGAAATCATGGATATGTTTGAGGACAAGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCTCTGACAAGAAATCATGGATATGTTTGAGGACAAGATTG  50

seq1  ACAATGAGCACAAAAGTCAATAGTAAATAAAAATGCTTCATATATTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCACAAAAGTCAATAGTAAATAAAAATGCTTCATATATTTCTT  100

seq1  TGATTCAATGTGGTTTAGAAAAATTTTATATTAGACTTATTATTTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAATGTGGTTTAGAAAAATTTTATATTAGACTTATTATTTAGCAT  150

seq1  CATTCTCCCTTTTGCCTGTGTTTTGAGTATTCTAGAATTTTTACTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCCTTTTGCCTGTGTTTTGAGTATTCTAGAATTTTTACTGTGTG  200

seq1  TTACTATCACTCACATTGTGAAGATGAGGCTCGAGAGCCCCATTTAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCACTCACATTGTGAAGATGAGGCTCGAGAGCCCCATTTAGTGT  250

seq1  TATTACAGGGCTCTACATGTGTGTCAGACTCCCACTCTTCCTAGCAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGGGCTCTACATGTGTGTCAGACTCCCACTCTTCCTAGCAGCCA  300

seq1  TGCAAACCCTTAAGCAGAAAGCATGTCCCTTCTCCTGCTGGTTCTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCCTTAAGCAGAAAGCATGTCCCTTCTCCTGCTGGTTCTGGCTG  350

seq1  TGCCTTCCCCAGTGAATGGATCTGGGCTTCAAGTCCTCAGTTGGGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCCCAGTGAATGGATCTGGGCTTCAAGTCCTCAGTTGGGGCCTT  400

seq1  CTTCAATTGGTGCATTGTCTGCTGTCCCTTTTGTGCTTCCTCTCTTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTGGTGCATTGTCTGCTGTCCCTTTTGTGCTTCCTCTCTTACAG  450

seq1  TTTGCCAGTTTGAATATTGCTCTCTTTTCCCATTAAAAATATAATGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGTTTGAATATTGCTCTCTTTTCCCATTAAAAATATAATGACTT  500

seq1  GTGTCAGAGCCTGCCTGGAACAACTAATTGCTATGCTGCTACCATCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGAGCCTGCCTGGAACAACTAATTGCTATGCTGCTACCATCTATG  550

seq1  AAAATAATCCATTAACTTCCCACCAACGTCTTATTTAAGATTTTTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATCCATTAACTTCCCACCAACGTCTTATTTAAGATTTTTTTTTA  600

seq1  TGTAAACTCAGTTTAAATACAAAATGAGTTTCCTAACTTTTAACTAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTCAGTTTAAATACAAAATGAGTTTCCTAACTTTTAACTAATTA  650

seq1  TTGTTTGCTAAGTGGACAGCTTTGTTAAAGCTTCTGATATTTTTTTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTAAGTGGACAGCTTTGTTAAAGCTTCTGATATTTTTTTCTAC  700

seq1  CAAAGAAATTAGTTAGACATTTTCTTTTTATACTCAAACTCTAATTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATTAGTTAGACATTTTCTTTTTATACTCAAACTCTAATTTCTT  750

seq1  AATTTATGTGTAGAATAATATGAGTACACTCTAAGAGAGGACAAACAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGTGTAGAATAATATGAGTACACTCTAAGAGAGGACAAACAACA  800

seq1  TTCTGTTTTCTATCCGTTTGTCTGACCAATGTTCATTTAGTCTATAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTCTATCCGTTTGTCTGACCAATGTTCATTTAGTCTATAACAA  850

seq1  TGACTATAATTGTGTTGAATCTGAGTCAAATAGTGTTGCAGTTTCTTAAA  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGACTATAATTGTGTTGAATCTGAGTC-AATAGTGTTGCAGTTTCTTAAA  899

seq1  TGTTAGAGCTAATAACATAAAAATGTGTTACTATATACTTTAGTACTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGCTAATAACATAAAAATGTGTTACTATATACTTTAGTACTCTT  949

seq1  GAGACTTAGCCAAGTCTTTCCAGATCTTAGGTATTTTGGAGCCATTTGCA  1000
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  GAGACTTAGCCAAGTCTTTCCAGATCT--AGTATTTTGGAGCCATTTGCA  997

seq1  ACCCCAGATGTTATTATGCATGAGATGTTCCCTAAAACATTATTAACCAC  1050
      || |||| ||||||||||||||||||| ||||||||||| || |||||||
seq2  ACTCCAG-TGTTATTATGCATGAGATG-TCCCTAAAACA-TAATAACCAC  1044

seq1  CATACTACCTGTATTAGTTATTCCCCTTGTCACTGTGACTGAATTAATTC  1100
      |||||||||||||||||||||||||| |||| ||||||||||| ||| ||
seq2  CATACTACCTGTATTAGTTATTCCCC-TGTC-CTGTGACTGAAATAAATC  1092

seq1  ACAGAGCTGAGGATTATTTTGGCTCCTAGTTCCAGGGTATTGTCCAT  1147
         |||||||||||| |||| ||| ||||||||| ||||||||||||
seq2  CACGAGCTGAGGATT-TTTTTGCT-CTAGTTCCA-GGTATTGTCCAT  1136