BAC Information

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BAC

Clone NameB6Ng01-091D16
Chromosome6 (Build37)
Map Location 91,343,656 - 91,490,541
singlet/doubletdoublet
Overlap geneWnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
Upstream geneZxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716
Downstream geneSlc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091D16.bB6Ng01-091D16.g
ACCDH903313DH903314
length1,0881,002
definitionDH903313|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D16, 5' end.DH903314|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,343,656 - 91,344,755)(91,489,527 - 91,490,541)
sequence
gaattccctatccacactcactcatacctcacggagcagagcacaaactc
cctcccacttcaaatgtctcgtaggccttctgagatccaggccagcctta
ggcctcaaccaggtgcacagcccactcaggcagcattcgcctaggtcaat
gcctggtcaggctgctgatgtgtgaatacttctggaatggggttcccagc
attgcgttggtccttttgtgcatttcaacagccatggtagatccttaggt
ttgccagaacctgcctccctctgtccctatctcatggcaccttggtttta
ttttctggaccttcggtcccatatgtttctcttcatgggatgggccagcc
agctcccttcttttcccagccaggctgctggacacaggagaaatcctgcc
ctactcttctaggctagacatagatcttggttgacaagacaggaagtggg
tagctgctctaaaagctgatccatgtggatgcctccagcagctgcctcgg
ttcttccccagagtccgcttatacagctggccctggagccctaaagaccc
cacaagacttcttcctccctcctgctgagaagcaaccatgttggttatgt
gaatgtttagtattcagccaataagcttcatattgtacacccctggcacc
agagtggagcagaaggaagctaagtgcagcactgggctatgccagacccc
acccctgtcaccaaggacctcactgcagtgtcctccctgcagcctacctt
ccgacccgcctcgttattgtgtaagttcatgagcgtccgggcattctgct
tgatctcccgggcatccacgaagaccttggcgaagccgatgccgtagcgg
atgtcggcagagcagccaccccacttccagccctcgtcccggtggtactg
gccttgcttctccttgtcgcagccacagtcgctcagttgccctgggtgca
ggcagcagtgatggcatgggccacgcccgcagcgatatcgcataggtgaa
ggcagcctccgactccttgggggcagagagtagagagagctttgtagagc
tgtctggagacctctgcaaggcagctaggagaagtgag
gaattccaagccaataagagttacacagaaagagctacacatggaagcca
gtttgcaccctagagacattactagaagcggtccacatggagtcaggtgt
ggtggtacaggcctttcagcttagcaattggggagctgagactggaggat
caagggtttgagatttgaaaatggccaggctggtctactcagcatgatac
atcttttttttttcttttttaatgcatgtggagagccggagaaatggctc
agttaacacatacactggcccagtggaggactggagtctgtttcccagct
cacaatcacctgtaactccagctctagagacccagtgttctcttctggcc
tctgtggacatcttcactcctgcacagacccacccacagaacgcacacat
gtacacaattaaacataaaacaagtctggtttgtttgctttgtttgtttt
tttgtttctgaagatagggtttctccttgtaaccccaacagtcccgaaac
ttgctctgtagaccaggctggacctgaactcacacctgcctctgcctcac
gagtgctgggatcaaaggcatgagccaccactacctggctaaaataagtc
tttttttttttttttttaagttgtgaggaaagcaaaaaatctgggtttag
taagcaagactgtatgtaggtagcttatatgcaaaagccgagggcagtac
ttctctaagacagggattgacatgataccaaagccaggttcagacatcac
aaactgcggactagcatcctcatgggtaaaaatgtaacaataccttccac
aaattactcacacagggatcataaccaggtaggatttctttatgaatgca
aggatggttcaatacacaaacgttagtcaacgagatagatgaactaccct
ggatatctgatacttacagcactactgttacagcacttcccacgatcact
catcacagtatcctccgactctgcaatttcttttcctacctctgactatc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_91343656_91344755
seq2: B6Ng01-091D16.b_41_1128

seq1  GAATTCCCTATCCACACTCACTCATACCTCACGGAGCAGAGCACAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATCCACACTCACTCATACCTCACGGAGCAGAGCACAAACTC  50

seq1  CCTCCCACTTCAAATGTCTCGTAGGCCTTCTGAGATCCAGGCCAGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTTCAAATGTCTCGTAGGCCTTCTGAGATCCAGGCCAGCCTTA  100

seq1  GGCCTCAACCAGGTGCACAGCCCACTCAGGCAGCATTCGCCTAGGTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAACCAGGTGCACAGCCCACTCAGGCAGCATTCGCCTAGGTCAAT  150

seq1  GCCTGGTCAGGCTGCTGATGTGTGAATACTTCTGGAATGGGGTTCCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCAGGCTGCTGATGTGTGAATACTTCTGGAATGGGGTTCCCAGC  200

seq1  ATTGCGTTGGTCCTTTTGTGCATTTCAACAGCCATGGTAGATCCTTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGTTGGTCCTTTTGTGCATTTCAACAGCCATGGTAGATCCTTAGGT  250

seq1  TTGCCAGAACCTGCCTCCCTCTGTCCCTATCTCATGGCACCTTGGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGAACCTGCCTCCCTCTGTCCCTATCTCATGGCACCTTGGTTTTA  300

seq1  TTTTCTGGACCTTCGGTCCCATATGTTTCTCTTCATGGGATGGGCCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGACCTTCGGTCCCATATGTTTCTCTTCATGGGATGGGCCAGCC  350

seq1  AGCTCCCTTCTTTTCCCAGCCAGGCTGCTGGACACAGGAGAAATCCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTTCTTTTCCCAGCCAGGCTGCTGGACACAGGAGAAATCCTGCC  400

seq1  CTACTCTTCTAGGCTAGACATAGATCTTGGTTGACAAGACAGGAAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTTCTAGGCTAGACATAGATCTTGGTTGACAAGACAGGAAGTGGG  450

seq1  TAGCTGCTCTAAAAGCTGATCCATGTGGATGCCTCCAGCAGCTGCCTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTCTAAAAGCTGATCCATGTGGATGCCTCCAGCAGCTGCCTCGG  500

seq1  TTCTTCCCCAGAGTCCGCTTATACAGCTGGCCCTGGAGCCCTAAAGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCCAGAGTCCGCTTATACAGCTGGCCCTGGAGCCCTAAAGACCC  550

seq1  CACAAGACTTCTTCCTCCCTCCTGCTGAGAAGCAACCATGTTGGTTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACTTCTTCCTCCCTCCTGCTGAGAAGCAACCATGTTGGTTATGT  600

seq1  GAATGTTTAGTATTCAGCCAATAAGCTTCATATTGTACACCCCTGGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTAGTATTCAGCCAATAAGCTTCATATTGTACACCCCTGGCACC  650

seq1  AGAGTGGAGCAGAAGGAAGCTAAGTGCAGCACTGGGCTATGCCAGACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAGCAGAAGGAAGCTAAGTGCAGCACTGGGCTATGCCAGACCCC  700

seq1  ACCCCTGTCACCAAGGACCTCACTGCAGTGTCCTCCCTGCAGCCTACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTCACCAAGGACCTCACTGCAGTGTCCTCCCTGCAGCCTACCTT  750

seq1  CCGACCCGCCTCGTTATTGTGTAAGTTCATGAGCGTCCGGGCATTCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCCGCCTCGTTATTGTGTAAGTTCATGAGCGTCCGGGCATTCTGCT  800

seq1  TGATCTCCCGGGCATCCACGAAGACCTTGGCGAAGCCGATGCCGTAGCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCCCGGGCATCCACGAAGACCTTGGCGAAGCCGATGCCGTAGCGG  850

seq1  ATGTCGGCAGAGCAGCCACCCCACTTCCAGCCCTCGTCCCGGTGGTACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGGCAGAGCAGCCACCCCACTTCCAGCCCTCGTCCCGGTGGTACTG  900

seq1  GCCTTGCTTCTCCTTGTCGCAGCCACAGTCGCTCAGGTTGCCCTGGGTGC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCTTGCTTCTCCTTGTCGCAGCCACAGTCGCTCA-GTTGCCCTGGGTGC  949

seq1  AGGCAGCAGTGATGGCATGGGCCACGCCCGCAGCGATAATCGCATAGGTG  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGCAGCAGTGATGGCATGGGCCACGCCCGCAGCGAT-ATCGCATAGGTG  998

seq1  AAGGCAGCCTCCCGACTCCCTGGGGGCAGAAGAGTAGAGAGAGCTTTGTA  1050
      |||||||||| |||||||| ||||||||| ||||||||||||||||||| 
seq2  AAGGCAGCCT-CCGACTCCTTGGGGGCAG-AGAGTAGAGAGAGCTTTGT-  1045

seq1  AGAGCTGGTCTGGGAGACCCTCTGGCAAGGGCAGCTAGGGAGAAGGTGAG  1100
      |||||| |||| ||||| ||||| |||| |||||||| |||||| |||||
seq2  AGAGCT-GTCT-GGAGA-CCTCT-GCAA-GGCAGCTA-GGAGAA-GTGAG  1088

seq1: chr6_91489527_91490541
seq2: B6Ng01-091D16.g_66_1067 (reverse)

seq1  CAGATAGTTCAGAGTGTAGGGAAAAGGAAATTGCCAGAGTCCGGGAGGGA  50
      ||||||| |||||| |||||  ||| ||||||| |||||||  ||| |||
seq2  CAGATAG-TCAGAG-GTAGG--AAAAGAAATTG-CAGAGTC--GGA-GGA  42

seq1  TACTGTGAATGAGTGATCGTGGGAAGGTGCTGTAACAGTAGTGCTGTAAA  100
      ||||||| ||||||||||||||||| ||||||||||||||||||||| ||
seq2  TACTGTG-ATGAGTGATCGTGGGAA-GTGCTGTAACAGTAGTGCTGT-AA  89

seq1  GTATCAGATAACCAGGGTAGTTCATCTATCTCGTTGACTAACGTTTGTGT  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGATATCCAGGGTAGTTCATCTATCTCGTTGACTAACGTTTGTGT  139

seq1  ATTGAACCATCCTTGCATTCATAAAGGAAATCCTACCTGGTTATGATCCC  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTGAACCATCCTTGCATTCATAAA-GAAATCCTACCTGGTTATGATCCC  188

seq1  TGTGTGAGTAATTTGTGGAAGGTATTGTTACATTTTTTACCCATGAGGAT  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTGTGAGTAATTTGTGGAAGGTATTGTTACA-TTTTTACCCATGAGGAT  237

seq1  GCTAGTCCGCAGTTTGTGATGTCTGAACCTGGCTTTGGTATCATGTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCCGCAGTTTGTGATGTCTGAACCTGGCTTTGGTATCATGTCAAT  287

seq1  CCCTGTCTTAGAGAAGTACTGCCCTCGGCTTTTGCATATAAGCTACCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTTAGAGAAGTACTGCCCTCGGCTTTTGCATATAAGCTACCTAC  337

seq1  ATACAGTCTTGCTTACTAAACCCAGATTTTTTGCTTTCCTCACAACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCTTGCTTACTAAACCCAGATTTTTTGCTTTCCTCACAACTTAA  387

seq1  AAAAAAAAAAAAAAAGACTTATTTTAGCCAGGTAGTGGTGGCTCATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGACTTATTTTAGCCAGGTAGTGGTGGCTCATGCCT  437

seq1  TTGATCCCAGCACTCGTGAGGCAGAGGCAGGTGTGAGTTCAGGTCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCAGCACTCGTGAGGCAGAGGCAGGTGTGAGTTCAGGTCCAGCC  487

seq1  TGGTCTACAGAGCAAGTTTCGGGACTGTTGGGGTTACAAGGAGAAACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGCAAGTTTCGGGACTGTTGGGGTTACAAGGAGAAACCCT  537

seq1  ATCTTCAGAAACAAAAAAACAAACAAAGCAAACAAACCAGACTTGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGAAACAAAAAAACAAACAAAGCAAACAAACCAGACTTGTTTTA  587

seq1  TGTTTAATTGTGTACATGTGTGCGTTCTGTGGGTGGGTCTGTGCAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATTGTGTACATGTGTGCGTTCTGTGGGTGGGTCTGTGCAGGAGT  637

seq1  GAAGATGTCCACAGAGGCCAGAAGAGAACACTGGGTCTCTAGAGCTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTCCACAGAGGCCAGAAGAGAACACTGGGTCTCTAGAGCTGGAG  687

seq1  TTACAGGTGATTGTGAGCTGGGAAACAGACTCCAGTCCTCCACTGGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTGATTGTGAGCTGGGAAACAGACTCCAGTCCTCCACTGGGCCA  737

seq1  GTGTATGTGTTAACTGAGCCATTTCTCCGGCTCTCCACATGCATTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTTAACTGAGCCATTTCTCCGGCTCTCCACATGCATTAAAAA  787

seq1  AGAAAAAAAAAAGATGTATCATGCTGAGTAGACCAGCCTGGCCATTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAAGATGTATCATGCTGAGTAGACCAGCCTGGCCATTTTCA  837

seq1  AATCTCAAACCCTTGATCCTCCAGTCTCAGCTCCCCAATTGCTAAGCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAACCCTTGATCCTCCAGTCTCAGCTCCCCAATTGCTAAGCTGA  887

seq1  AAGGCCTGTACCACCACACCTGACTCCATGTGGACCGCTTCTAGTAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGTACCACCACACCTGACTCCATGTGGACCGCTTCTAGTAATGT  937

seq1  CTCTAGGGTGCAAACTGGCTTCCATGTGTAGCTCTTTCTGTGTAACTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGTGCAAACTGGCTTCCATGTGTAGCTCTTTCTGTGTAACTCTT  987

seq1  ATTGGCTTGGAATTC  1015
      |||||||||||||||
seq2  ATTGGCTTGGAATTC  1002