BAC Information

Click to search

BAC

Clone NameB6Ng01-091F10
Chromosome6 (Build37)
Map Location 33,363,674 - 33,388,516
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091F10.bB6Ng01-091F10.g
ACCDH903388DH903389
length4711,168
definitionDH903388|Mus musculus domesticus DNA, BAC clone: B6Ng01-091F10, 5' end.DH903389|Mus musculus domesticus DNA, BAC clone: B6Ng01-091F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,363,674 - 33,364,150)(33,387,314 - 33,388,516)
sequence
ccttagttctgacttaatgagacttgatgtgcctgggccagttggtacaa
gatatgagggaaaggggttctcttggaagaaggggaggaggaatgagaaa
aagggatggtggggtgcgactgagaggagaggagggagagggctgtgatc
aggatgtaaaatgaatcaatgaatgaatgaatgaatgaatgaatttttaa
aaagatgaaataagaagagcttgccatatttgatatttagagcagtcagg
tcaatgaatgaccttttagtaggaacatattgttgcaaagctacctccca
caccagaagcggtgagggaagcagaataatgaccttataaaaagaataaa
agtctgaagagctgcacagttcctatagcactaaatgattggaaactctg
aaacattgttgatataggatttaaaggaaaagggtatgctttagaagcag
aatacaccctcacattttagg
gaattctttggcctctgtggtttcttcttggcaaaaaaggctgcgaactc
tcgtccagtactggcatagcttagttgggctgatggctctgaggcggtgc
gtgtgttcttcatatccaagtactcagtcaacagcatctatataagcaca
atgaggagttcaatttattgtacgtcatcctagacttccagaatatatta
acctagatgttcattcttctactcaaagatataagaaaagctttattaca
accataaaataatatccctgttagcaattcacagggaacgtgagtttata
ggcattggaatatgccaggtagcatgctgagtgaattcgtcaaaatccat
ctttacttagcatgtaatcctcattattccaaagtacaacagcattagca
gcaatggcctaatatttactgagcacttactgtgctctaggcaagacatt
atctgtttagatgtattagggtgtgggttcagaaaggttcagaagcgaag
tggtccctggtgaattaatgacaggacccatgctgagacccttcatcatt
ctgccagcactatatataagcatgacagtaagcctatcaataaaggccaa
gagagtggggctgagtaaggtactcctgacctgcaaagtcttagtagaac
tgctaatttccttgaaatgaggaaaaagaaaaaagaaaaaagaaaagaaa
aagcaactgttttgtgattaactacttacactacttacaaaagatactcc
ttataagatcaactcaccacagagccacaaggattgaagcctgtgctagg
atcaactatagttaccagaattctaaacacatccatgaaaaatagaaatc
tggaacagaaagcataatagttcctaagaatacctaataacactaatgcg
gttgaactcattcatatcatttaaaaaaaattcaattctgtgattcaagg
aaatgctttcagagagacagtctcatctgatatgtactcgctccctcatg
acataaactattttaaataccatagtcatcgaaagccttctgagctacga
aactattagtagttaaggtgattagcttgccgcagcaacatactactcag
tttaacatcgaagttataaacaatagcatcttctgagtcttaatcattga
gtggattctcactaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33363674_33364150
seq2: B6Ng01-091F10.b_43_519

seq1  GAATTCCCTTAGTTCTGACTTAATGAGACTTGATGTGCCTGGGCCAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTAGTTCTGACTTAATGAGACTTGATGTGCCTGGGCCAGTTG  50

seq1  GTACAAGATATGAGGGAAAGGGGTTCTCTTGGAAGAAGGGGAGGAGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGATATGAGGGAAAGGGGTTCTCTTGGAAGAAGGGGAGGAGGAAT  100

seq1  GAGAAAAAGGGATGGTGGGGTGCGACTGAGAGGAGAGGAGGGAGAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGGGATGGTGGGGTGCGACTGAGAGGAGAGGAGGGAGAGGGCT  150

seq1  GTGATCAGGATGTAAAATGAATCAATGAATGAATGAATGAATGAATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGGATGTAAAATGAATCAATGAATGAATGAATGAATGAATGAAT  200

seq1  TTTTAAAAAGATGAAATAAGAAGAGCTTGCCATATTTGATATTTAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGATGAAATAAGAAGAGCTTGCCATATTTGATATTTAGAGCA  250

seq1  GTCAGGTCAATGAATGACCTTTTAGTAGGAACATATTGTTGCAAAGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCAGGTCAATGAATGACCTTTTAGTAGGAACATATTGTTGCAAAGCTAC  300

seq1  CTCCCACACCAGAAGCGGTGAGGGAAGCAGAATAATGACCTTATAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACACCAGAAGCGGTGAGGGAAGCAGAATAATGACCTTATAAAAAG  350

seq1  AATAAAAGTCTGAAGAGCTGCACAGTTCCTATAGCACTAAATGATTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTCTGAAGAGCTGCACAGTTCCTATAGCACTAAATGATTGGAA  400

seq1  ACTCTGAAACAGTGTTGATAGAGGTTTTAAAGGAAAAGGGTATGCTTTAG  450
      ||||||||||| |||||||| ||| |||||||||||||||||||||||||
seq2  ACTCTGAAACATTGTTGATATAGGATTTAAAGGAAAAGGGTATGCTTTAG  450

seq1  AAGCAGAATACACCCTCACATTTTAGG  477
      |||||||||||||||||||||||||||
seq2  AAGCAGAATACACCCTCACATTTTAGG  477

seq1: chr6_33387314_33388516
seq2: B6Ng01-091F10.g_67_1234 (reverse)

seq1  AAATATAGTGAGAAATTCAAACTTCATAGATTAGAGACTCAGAAGAATGC  50
      |||| |||||||||  || |   |||  ||||| ||||||||||| ||||
seq2  AAAT-TAGTGAGAA--TCCA--CTCAATGATTA-AGACTCAGAAG-ATGC  43

seq1  TAATGTTTATAAAACTTCTGATGTTTAAATACTGAGTAGTATGTTTGCTT  100
      || |||||||  |||||| ||||||   | ||||||||||||| |||| |
seq2  TATTGTTTAT--AACTTC-GATGTT---AAACTGAGTAGTATG-TTGC-T  85

seq1  GCGGCCGAGGCTTAATCACCCTTAAACTTACTAAATAGTGTTCGTAGGCT  150
      |||||  | || |||||| ||||||   |||| |||||| |||||||   
seq2  GCGGC--AAGC-TAATCA-CCTTAA--CTACT-AATAGT-TTCGTAG--C  125

seq1  TCAGAAGGGCTTTTCGATGACTATGGTATTTAAAATAGTTTAATGTTCAA  200
      ||||||||   |||||||||||||||||||||||||||||| ||||   |
seq2  TCAGAAGG--CTTTCGATGACTATGGTATTTAAAATAGTTT-ATGT--CA  170

seq1  TGAGTGAGCGAGTACATAATCAGATGAGACCTTGTCTCTCTGAAAAGCAT  250
      |||| |||||||||||| ||||||||||||  |||||||||| |||||||
seq2  TGAGGGAGCGAGTACAT-ATCAGATGAGAC--TGTCTCTCTG-AAAGCAT  216

seq1  TTCCTTGAATCACAGAATTGAATTTTTTTTTAAATGATATGAATGAGTTC  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCCTTGAATCACAGAATTGAA-TTTTTTTTAAATGATATGAATGAGTTC  265

seq1  AACCGCATTAGTGTTATTAGGTATTCTTAGGAACTATTATGCTTTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCATTAGTGTTATTAGGTATTCTTAGGAACTATTATGCTTTCTGTT  315

seq1  CCAGATTTCTATTTTTCATGGATGTGTTTAGAATTCTGGTAACTATAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTCTATTTTTCATGGATGTGTTTAGAATTCTGGTAACTATAGTT  365

seq1  GATCCTAGCACAGGCTTCAATCCTTGTGGCTCTGTGGTGAGTTGATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGCACAGGCTTCAATCCTTGTGGCTCTGTGGTGAGTTGATCTTA  415

seq1  TAAGGAGTATCTTTTGTAAGTAGTGTAAGTAGTTAATCACAAAACAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGTATCTTTTGTAAGTAGTGTAAGTAGTTAATCACAAAACAGTTG  465

seq1  CTTTTTCTTTTCTTTTTTCTTTTTTCTTTTTCCTCATTTCAAGGAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTTCTTTTTTCTTTTTTCTTTTTCCTCATTTCAAGGAAATTA  515

seq1  GCAGTTCTACTAAGACTTTGCAGGTCAGGAGTACCTTACTCAGCCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTACTAAGACTTTGCAGGTCAGGAGTACCTTACTCAGCCCCACT  565

seq1  CTCTTGGCCTTTATTGATAGGCTTACTGTCATGCTTATATATAGTGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCCTTTATTGATAGGCTTACTGTCATGCTTATATATAGTGCTGG  615

seq1  CAGAATGATGAAGGGTCTCAGCATGGGTCCTGTCATTAATTCACCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGATGAAGGGTCTCAGCATGGGTCCTGTCATTAATTCACCAGGGA  665

seq1  CCACTTCGCTTCTGAACCTTTCTGAACCCACACCCTAATACATCTAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCGCTTCTGAACCTTTCTGAACCCACACCCTAATACATCTAAACA  715

seq1  GATAATGTCTTGCCTAGAGCACAGTAAGTGCTCAGTAAATATTAGGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGTCTTGCCTAGAGCACAGTAAGTGCTCAGTAAATATTAGGCCAT  765

seq1  TGCTGCTAATGCTGTTGTACTTTGGAATAATGAGGATTACATGCTAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTAATGCTGTTGTACTTTGGAATAATGAGGATTACATGCTAAGTA  815

seq1  AAGATGGATTTTGACGAATTCACTCAGCATGCTACCTGGCATATTCCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGATTTTGACGAATTCACTCAGCATGCTACCTGGCATATTCCAAT  865

seq1  GCCTATAAACTCACGTTCCCTGTGAATTGCTAACAGGGATATTATTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAAACTCACGTTCCCTGTGAATTGCTAACAGGGATATTATTTTAT  915

seq1  GGTTGTAATAAAGCTTTTCTTATATCTTTGAGTAGAAGAATGAACATCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAATAAAGCTTTTCTTATATCTTTGAGTAGAAGAATGAACATCTA  965

seq1  GGTTAATATATTCTGGAAGTCTAGGATGACGTACAATAAATTGAACTCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATATATTCTGGAAGTCTAGGATGACGTACAATAAATTGAACTCCT  1015

seq1  CATTGTGCTTATATAGATGCTGTTGACTGAGTACTTGGATATGAAGAACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCTTATATAGATGCTGTTGACTGAGTACTTGGATATGAAGAACA  1065

seq1  CACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTGGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTGGA  1115

seq1  CGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAA  1165

seq1  TTC  1203
      |||
seq2  TTC  1168