BAC Information

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BAC

Clone NameB6Ng01-091N14
Chromosome6 (Build37)
Map Location 28,878,991 - 29,046,680
singlet/doubletdoublet
Overlap geneLOC100041367, Lep
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4
Downstream geneRbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091N14.bB6Ng01-091N14.g
ACCDH903768DH903769
length7951,194
definitionDH903768|Mus musculus domesticus DNA, BAC clone: B6Ng01-091N14, 5' end.DH903769|Mus musculus domesticus DNA, BAC clone: B6Ng01-091N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,878,991 - 28,879,785)(29,045,446 - 29,046,680)
sequence
gcaccaattgttattagacgcgttctcacgaccggccaggaagaacacaa
caaccagaatcttctacggcaaagctttattgcttacatctttatcgggc
cagagtgtaagaagcaagagagcgcaagaagcaagagagagagaaaaacg
aaaccccttctattttaaagagaacaaccattgcctagggcgcatcactc
cctgattggctgcagcccatggccgagctgacgttcacgggaaaaacaga
gtacaagtggtcgtaaatacccttggctcatgcgcagattatttgtttac
caacttagaacacaggatgtcagcgccatcttgtgacggcgaatgtgggg
gcggcttcccacagggaggggttatgtttcctggatttcagtttggaaag
tgaaaacatggtgggtactgaaggtagtgaggtctgcgagtgttgcgtcc
gctctcgaccagcaagaacgacacaacacggtcggattcttctcaacagc
ctttattgcaggaaggtctcaatgctgctacggggaccccgggcacccag
ggaggtctgcttatatactctcagccccccatccactcacagcaggccac
accacctcaccaggcacgcagcttcagccaatcagggtggcaggggcatg
tctccaccaaatatggacttgtttacaccgccagcatcatggagcacctg
cgcagctctcacgatggtcgtggcttattttcaggtgtatgagaaagtca
ggtgcaagtcataagacttagctgcagtctcgggggggggggggg
gaattcaaacagatttgctgccctcctgctttagccctgcccactacatc
acttccttccttcacagactcattccaagagtctgttttttccaccccca
cccgatctctcctcaatctgtcccacctccctccagccctgcatcacaaa
tactatgacccctcagagtctccagaacttggcctctccctaaatccttt
cctaggtcccactgatcacccagctccctctacttggctcttaagctctt
ccctcctgggatcccgtgtgcccttctttttctcatggttggcgcctggt
ctcttgtgtacttgagctctccaggttgctacctggttctctctcttccg
tgttccacatccactggggcaacttgcccattcccaaagccttggtcatc
agagcccagtggctcctcctggattttcatgcaggtgtctcaaactcagg
gggccccttgtggatataactcagcttctcccccctaccccaagctcctc
accccgataaatggctcctagtctcatttccttatgcaccctcaccccag
ttccgtttacctcagtcatcctaggctcttcgctcttgtcacacatccct
gacgccatcacagtccctgagctctggtctctcctggaaccctgcttctg
ttctgtcaccgctgtctctggttctcatctggaggacagcaccagtcttc
ccactggtccctcctgaaatgtgtcctcctcaggacatccatgctaggtt
cctagagggcaagtctgactaagtcactctccgtattactacacactggt
ttccattggctctcgggatcagcctatcagagggcaacttgtcctcccat
tccaggtgaatataattcagtggacctcagagcacactttttcaacactg
agctatgacctacaccattcatcactttgtgcatgtagtatgtgtacatg
tatgtgtagtacctgtacatgtggcggcatcgatggatgtaggtgtcttt
cctctcttacccctcttccatattcccttgagtatgtttccctctgcact
gattttaacccttatagctaagctgcaagcagctctgaaatcctctgttt
cttacctccctatggctggtttccggcacttgcacgcttgaatttttagg
gattgatcagctcatcagctgtgttaggtcaagttgaataagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_28878991_28879785
seq2: B6Ng01-091N14.b_55_849

seq1  GCACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACAA  50

seq1  CAACCAGAATCTTCTACGGCAAAGCTTTATTGCTTACATCTTTATCGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAATCTTCTACGGCAAAGCTTTATTGCTTACATCTTTATCGGGC  100

seq1  CAGAGTGTAAGAAGCAAGAGAGCGCAAGAAGCAAGAGAGAGAGAAAAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTAAGAAGCAAGAGAGCGCAAGAAGCAAGAGAGAGAGAAAAACG  150

seq1  AAACCCCTTCTATTTTAAAGAGAACAACCATTGCCTAGGGCGCATCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTTCTATTTTAAAGAGAACAACCATTGCCTAGGGCGCATCACTC  200

seq1  CCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTTCACGGGAAAAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTTCACGGGAAAAACAGA  250

seq1  GTACAAGTGGTCGTAAATACCCTTGGCTCATGCGCAGATTATTTGTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTGGTCGTAAATACCCTTGGCTCATGCGCAGATTATTTGTTTAC  300

seq1  CAACTTAGAACACAGGATGTCAGCGCCATCTTGTGACGGCGAATGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAGAACACAGGATGTCAGCGCCATCTTGTGACGGCGAATGTGGGG  350

seq1  GCGGCTTCCCACAGGGAGGGGTTATGTTTCCTGGATTTCAGTTTGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTTCCCACAGGGAGGGGTTATGTTTCCTGGATTTCAGTTTGGAAAG  400

seq1  TGAAAACATGGTGGGTACTGAAGGTAGTGAGGTCTGCGAGTGTTGCGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACATGGTGGGTACTGAAGGTAGTGAGGTCTGCGAGTGTTGCGTCC  450

seq1  GCTCTCGACCAGCAAGAACGACACAACACGGTCGGATTCTTCTCAACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCGACCAGCAAGAACGACACAACACGGTCGGATTCTTCTCAACAGC  500

seq1  CTTTATTGCAGGAAGGTCTCAATGCTGCTACGGGGACCCCGGGCACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGCAGGAAGGTCTCAATGCTGCTACGGGGACCCCGGGCACCCAG  550

seq1  GGAGGTCTGCTTATATACTCTCAGCCCCCCATCCACTCACAGCAGGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTGCTTATATACTCTCAGCCCCCCATCCACTCACAGCAGGCCAC  600

seq1  ACCACCTCACCAGGCACGCAGCTTCAGCCAATCAGGGTGGCAGGGGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCACCAGGCACGCAGCTTCAGCCAATCAGGGTGGCAGGGGCATG  650

seq1  TCTCCACCAAATATGGACTTGTTTACACCGCCAGCATCATGGAGCACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCAAATATGGACTTGTTTACACCGCCAGCATCATGGAGCACCTG  700

seq1  CGCAGCTCTCACGATGGTCGTGGCTTATTTTCAGGTGTATGAGAAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTCTCACGATGGTCGTGGCTTATTTTCAGGTGTATGAGAAAGTCA  750

seq1  GGTGCAAGTCATAAGACTTAGCTGCAGTCTCGGGGGGGGGGGGGG  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAGTCATAAGACTTAGCTGCAGTCTCGGGGGGGGGGGGGG  795

seq1: chr6_29045446_29046680
seq2: B6Ng01-091N14.g_68_1261 (reverse)

seq1  CACTTAATTTCAACTTGACATAAACTAACAAGCCTAGGATGGGAGCT--T  48
      ||||||  |||||||||||     ||||||   ||  |||  |||||  |
seq2  CACTTA--TTCAACTTGAC-----CTAACACAGCT--GAT--GAGCTGAT  39

seq1  GAATCCCCAATACTCACCTAAAAAATCTAGGCGTGGCCACACGTGCCTGT  98
       ||||           |||||||| || | |||||    || ||||| | 
seq2  CAATC-----------CCTAAAAATTC-AAGCGTG----CAAGTGCCGG-  72

seq1  AACACCAGCATTAGGGAGGT-AGAAACAGGAGGATTTCCAGGAGCTTGCT  147
       | ||||||  ||||||||| ||||||| |||||||||   |||| ||| 
seq2  -AAACCAGCCATAGGGAGGTAAGAAACA-GAGGATTTC--AGAGC-TGC-  116

seq1  GTTGGCCAGCCTAGCTATAAGGGTAAAATTCAGGTGCAGAGGGAAACCAT  197
       |||  |||| ||||||||||||| ||| ||| ||||||||||||| |||
seq2  -TTG--CAGCTTAGCTATAAGGGTTAAAATCA-GTGCAGAGGGAAA-CAT  161

seq1  ACCTCAAGGGAATATGGAAGA-GAGTAAGAGA-GAAAGACACCTAACATC  245
      | ||||||||||||||||||| | |||||||| ||||||||||| |||||
seq2  A-CTCAAGGGAATATGGAAGAGGGGTAAGAGAGGAAAGACACCT-ACATC  209

seq1  CATCGATGGCCGCCACATGTACAGGTACCTTACACATACATGTACACATA  295
      ||||||| ||||||||||||||||||||  ||||||||||||||||||||
seq2  CATCGAT-GCCGCCACATGTACAGGTAC--TACACATACATGTACACATA  256

seq1  CTACATGCACAAAGTGATGAATGGTTGTAGGTCATAGCTCAGTGTTGAAA  345
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTACATGCACAAAGTGATGAATGG-TGTAGGTCATAGCTCAGTGTTGAAA  305

seq1  AAGTGTGGCTCTGAGGTCCACTGAATTATATTCACCTGGAATGGGAGGAC  395
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGT-GCTCTGAGGTCCACTGAATTATATTCACCTGGAATGGGAGGAC  354

seq1  AAGTTGCCCTCTGATAGGCTGATCCCGAGAGCCAATGGAAACCAGTGTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCCCTCTGATAGGCTGATCCCGAGAGCCAATGGAAACCAGTGTGT  404

seq1  AGTAATACGGAGAGTGACTTAGTCAGACTTGCCCTCTAGGAACCTAGCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACGGAGAGTGACTTAGTCAGACTTGCCCTCTAGGAACCTAGCAT  454

seq1  GGATGTCCTGAGGAGGACACATTTCAGGAGGGACCAGTGGGAAGACTGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCTGAGGAGGACACATTTCAGGAGGGACCAGTGGGAAGACTGGT  504

seq1  GCTGTCCTCCAGATGAGAACCAGAGACAGCGGTGACAGAACAGAAGCAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTCCAGATGAGAACCAGAGACAGCGGTGACAGAACAGAAGCAGG  554

seq1  GTTCCAGGAGAGACCAGAGCTCAGGGACTGTGATGGCGTCAGGGATGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGAGAGACCAGAGCTCAGGGACTGTGATGGCGTCAGGGATGTGT  604

seq1  GACAAGAGCGAAGAGCCTAGGATGACTGAGGTAAACGGAACTGGGGTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGCGAAGAGCCTAGGATGACTGAGGTAAACGGAACTGGGGTGAG  654

seq1  GGTGCATAAGGAAATGAGACTAGGAGCCATTTATCGGGGTGAGGAGCTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATAAGGAAATGAGACTAGGAGCCATTTATCGGGGTGAGGAGCTTG  704

seq1  GGGTAGGGGGGAGAAGCTGAGTTATATCCACAAGGGGCCCCCTGAGTTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGGGGAGAAGCTGAGTTATATCCACAAGGGGCCCCCTGAGTTTG  754

seq1  AGACACCTGCATGAAAATCCAGGAGGAGCCACTGGGCTCTGATGACCAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTGCATGAAAATCCAGGAGGAGCCACTGGGCTCTGATGACCAAG  804

seq1  GCTTTGGGAATGGGCAAGTTGCCCCAGTGGATGTGGAACACGGAAGAGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGAATGGGCAAGTTGCCCCAGTGGATGTGGAACACGGAAGAGAG  854

seq1  AGAACCAGGTAGCAACCTGGAGAGCTCAAGTACACAAGAGACCAGGCGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGGTAGCAACCTGGAGAGCTCAAGTACACAAGAGACCAGGCGCC  904

seq1  AACCATGAGAAAAAGAAGGGCACACGGGATCCCAGGAGGGAAGAGCTTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAGAAAAAGAAGGGCACACGGGATCCCAGGAGGGAAGAGCTTAA  954

seq1  GAGCCAAGTAGAGGGAGCTGGGTGATCAGTGGGACCTAGGAAAGGATTTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGTAGAGGGAGCTGGGTGATCAGTGGGACCTAGGAAAGGATTTA  1004

seq1  GGGAGAGGCCAAGTTCTGGAGACTCTGAGGGGTCATAGTATTTGTGATGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGCCAAGTTCTGGAGACTCTGAGGGGTCATAGTATTTGTGATGC  1054

seq1  AGGGCTGGAGGGAGGTGGGACAGATTGAGGAGAGATCGGGTGGGGGTGGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGAGGGAGGTGGGACAGATTGAGGAGAGATCGGGTGGGGGTGGA  1104

seq1  AAAAACAGACTCTTGGAATGAGTCTGTGAAGGAAGGAAGTGATGTAGTGG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGACTCTTGGAATGAGTCTGTGAAGGAAGGAAGTGATGTAGTGG  1154

seq1  GCAGGGCTAAAGCAGGAGGGCAGCAAATCTGTTTGAATTC  1235
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTAAAGCAGGAGGGCAGCAAATCTGTTTGAATTC  1194