BAC Information

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BAC

Clone NameB6Ng01-092O07
Chromosome6 (Build37)
Map Location 107,472,554 - 107,577,346
singlet/doubletdoublet
Overlap geneLrrn1
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092O07.bB6Ng01-092O07.g
ACCDH904527DH904528
length1,140340
definitionDH904527|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O07, 5' end.DH904528|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,576,195 - 107,577,346)(107,472,554 - 107,472,894)
sequence
gaattccagatgggtttggtcatctgaggtagaacccacaatgtctacta
ctaggttataaatcagttatgcattttgcagtgaagaggagctagaaatc
tactttgaggttagtgtgaaccctcttatacaattaggtgttatacttgc
atgttggttttctttttcattcctgtgataaacactatgaccaaaagcat
cttagaagaggaaagggtttatttcagcttacacttccagggcacagtcc
attattgaaggaagtcaaggcaggaactgaagcagaaaccatgaagaaat
gctgttttctggctggctacctggctcatgctgagttagatttttgtatc
cagcctacatccacatatgtagggttgttgtcacccacagtggactgaac
cattccgcataaatcaccagtcaaaacagtgccccttatatatgcccaca
ggtcaatatgatcaaggtagttcttcatttgtgatctcctcttccccaac
agtaaatataaaccagcacaatgtggtgttataaatgtgacactcccaga
acctggtttcaagttagttagttagacattaactttcatgcatttcaact
cctccttaatttttttaaatccttaagtctatttatttaaattggcaaat
gaaatatgtttatttctgtcatgtaaaacaccaatccattcttgatatca
agtagaaaatctaaataactcagtccttgttccctagggacttgaattta
taaaagaaggaagtatacatgcctgggtaagtggattagaatacaaaaac
aaacattcaaatgctaaagaaaccatgaaaattagaaactacttactgca
catgtggtgttttagatattgggctaggtcctttctgtatatgatcacag
ttaatcattgcaacagcccctactagctatcttcacttgataaagaagaa
agcacagattagacggattaaatcccagttcagtgattcagaggaagtga
catttgaaaccaagcttctgttttcaaacctgtgtctcatttcatatgac
atgctttaggcaatagtgaaattcaacccagaattccaaaccataatctc
tgatactaacttatttggtcaattctgtgtttatggtggg
tttctgtctcaacttctatttcctgcctaagctataggccacagactttt
taattaacaggtgacggctccatacaatacacagatattctctctatatg
ggtccaagaattgaatttgggttttcaatcttggcagcaaacaccatctc
ttgctgagacatcttgaaaattttctctcaataccccccccccacctcca
ctttgtctctctccctcctttacttccacctctcgtgtgtatgtgtgtgt
gtgtgtgtgtgtatggatggatggatgttttgcctgcactctgtctgtct
accatttgattgaggatagtgcctgatgtcttgatttcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107576195_107577346
seq2: B6Ng01-092O07.b_49_1188 (reverse)

seq1  CCCACACACATAAACACAGGAATGACCAAATAAGTTAGTATCAGAGATTT  50
      |||||   ||||||||||| | ||||||||||||||||||||||||||| 
seq2  CCCAC---CATAAACACAGAATTGACCAAATAAGTTAGTATCAGAGATT-  46

seq1  AATTGTTTGGAAATTCTGGGTTTTGATTTCACTTATTGCCTAAAGCATGT  100
       || |||||| ||||||||| ||  ||||||| |||||||||||||||||
seq2  -ATGGTTTGG-AATTCTGGG-TTGAATTTCAC-TATTGCCTAAAGCATGT  92

seq1  CATAATGAAATGAG-CACAGGGTTTGAAAACAGAGCTTTGGTTTCAAATG  149
      ||| |||||||||| |||| ||||||||||||||   |||||||||||||
seq2  CAT-ATGAAATGAGACACA-GGTTTGAAAACAGAAGCTTGGTTTCAAATG  140

seq1  TCACCTCCTCTGAATCACCTGAACTGGGATTTAATCCTTCTAATCTGTGC  199
      |||| |||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TCACTTCCTCTGAATCA-CTGAACTGGGATTTAATCCGTCTAATCTGTGC  189

seq1  TTTTCTTCTTTATCAAGTGAAGATAGCTAGTAGGGGGCTGTTGCAATGAT  249
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  -TTTCTTCTTTATCAAGTGAAGATAGCTAGTA-GGGGCTGTTGCAATGAT  237

seq1  TAACTGTGATCATATACAGAAAGGACCTAGCCCAATATCTAAAACACCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGATCATATACAGAAAGGACCTAGCCCAATATCTAAAACACCAC  287

seq1  ATGTGCAGTAAGTAGTTTCTAATTTTCATGGTTTCTTTAGCATTTGAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGTAAGTAGTTTCTAATTTTCATGGTTTCTTTAGCATTTGAATG  337

seq1  TTTGTTTTTGTATTCTAATCCACTTACCCAGGCATGTATACTTCCTTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTATTCTAATCCACTTACCCAGGCATGTATACTTCCTTCTT  387

seq1  TTATAAATTCAAGTCCCTAGGGAACAAGGACTGAGTTATTTAGATTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATTCAAGTCCCTAGGGAACAAGGACTGAGTTATTTAGATTTTCT  437

seq1  ACTTGATATCAAGAATGGATTGGTGTTTTACATGACAGAAATAAACATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATATCAAGAATGGATTGGTGTTTTACATGACAGAAATAAACATAT  487

seq1  TTCATTTGCCAATTTAAATAAATAGACTTAAGGATTTAAAAAAATTAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGCCAATTTAAATAAATAGACTTAAGGATTTAAAAAAATTAAGG  537

seq1  AGGAGTTGAAATGCATGAAAGTTAATGTCTAACTAACTAACTTGAAACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGAAATGCATGAAAGTTAATGTCTAACTAACTAACTTGAAACCA  587

seq1  GGTTCTGGGAGTGTCACATTTATAACACCACATTGTGCTGGTTTATATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGGAGTGTCACATTTATAACACCACATTGTGCTGGTTTATATTT  637

seq1  ACTGTTGGGGAAGAGGAGATCACAAATGAAGAACTACCTTGATCATATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGGGGAAGAGGAGATCACAAATGAAGAACTACCTTGATCATATTG  687

seq1  ACCTGTGGGCATATATAAGGGGCACTGTTTTGACTGGTGATTTATGCGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGGCATATATAAGGGGCACTGTTTTGACTGGTGATTTATGCGGA  737

seq1  ATGGTTCAGTCCACTGTGGGTGACAACAACCCTACATATGTGGATGTAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAGTCCACTGTGGGTGACAACAACCCTACATATGTGGATGTAGG  787

seq1  CTGGATACAAAAATCTAACTCAGCATGAGCCAGGTAGCCAGCCAGAAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATACAAAAATCTAACTCAGCATGAGCCAGGTAGCCAGCCAGAAAAC  837

seq1  AGCATTTCTTCATGGTTTCTGCTTCAGTTCCTGCCTTGACTTCCTTCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCTTCATGGTTTCTGCTTCAGTTCCTGCCTTGACTTCCTTCAAT  887

seq1  AATGGACTGTGCCCTGGAAGTGTAAGCTGAAATAAACCCTTTCCTCTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTGTGCCCTGGAAGTGTAAGCTGAAATAAACCCTTTCCTCTTCT  937

seq1  AAGATGCTTTTGGTCATAGTGTTTATCACAGGAATGAAAAAGAAAACCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTTTTGGTCATAGTGTTTATCACAGGAATGAAAAAGAAAACCAA  987

seq1  CATGCAAGTATAACACCTAATTGTATAAGAGGGTTCACACTAACCTCAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGTATAACACCTAATTGTATAAGAGGGTTCACACTAACCTCAAA  1037

seq1  GTAGATTTCTAGCTCCTCTTCACTGCAAAATGCATAACTGATTTATAACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTCTAGCTCCTCTTCACTGCAAAATGCATAACTGATTTATAACC  1087

seq1  TAGTAGTAGACATTGTGGGTTCTACCTCAGATGACCAAACCCATCTGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAGACATTGTGGGTTCTACCTCAGATGACCAAACCCATCTGGAA  1137

seq1  TTC  1152
      |||
seq2  TTC  1140

seq1: chr6_107472554_107472894
seq2: B6Ng01-092O07.g_73_412

seq1  TTTCTGTCTCAACTTCTATTTCCTGCCTAAGCTATAGGCCACAGACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCAACTTCTATTTCCTGCCTAAGCTATAGGCCACAGACTTTT  50

seq1  TAATTAACAGGTGACGGCTCCATACAATACACAGATATTCTCTCTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACAGGTGACGGCTCCATACAATACACAGATATTCTCTCTATATG  100

seq1  GGTCCAAGAATTGAATTTGGGTTTTCAATCTTGGCAGCAAACACCATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGAATTGAATTTGGGTTTTCAATCTTGGCAGCAAACACCATCTC  150

seq1  TTGCTGAGACATCTTGAAAATTTTCTCTCAATACCCCCCCCCCACCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGACATCTTGAAAATTTTCTCTCAATACCCCCCCCCCACCTCCA  200

seq1  CTTTGTCTCTCTCCCTCCTTTACTTCCACCTCTCGTGTGTATGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCTCTCCCTCCTTTACTTCCACCTCTCGTGTGTATGTGTGTGT  250

seq1  GTGTGTGTGTGTATGGATGGATGGATGTTTTGCCTGCATGTATGTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||  | ||||||||
seq2  GTGTGTGTGTGTATGGATGGATGGATGTTTTGCCTGCA-CTCTGTCTGTC  299

seq1  TACCATTTGTCTGAGGTTGTTGCCTGATGTCTTGATTTCAC  341
      |||||||||  ||||| |  |||||||||||||||||||||
seq2  TACCATTTGATTGAGGATAGTGCCTGATGTCTTGATTTCAC  340