BAC Information

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BAC

Clone NameB6Ng01-092O18
Chromosome6 (Build37)
Map Location 99,111,657 - 99,289,560
singlet/doubletdoublet
Overlap geneFoxp1
Upstream geneGm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092O18.bB6Ng01-092O18.g
ACCDH904549DH904550
length1,170924
definitionDH904549|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O18, 5' end.DH904550|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,111,657 - 99,112,842)(99,288,632 - 99,289,560)
sequence
gaattcaactatttgggaggtggagacaagaggatccagaattcttggct
ggctttgggtacatagtaatttccatgccagcagcctagctacatgagaa
gctgtctcagagagaacatcagacagcccttaccaaaagcctcactccta
agaatttgattcaaattttaagaaagtagtttgaaggtttgtccgtttct
tgtatggcatttcccaacaatttctctatggaaaagttaccaaatttcct
caagatatttcattcctttttttttttcccctctcaaatacctgataata
aatggtaccacaactacacataagataaatgaatcaagggcaaacctgcc
ttgttatcaggagcaaaaactcaaaatatttcctgatcccacagggtggg
aaagcaaatccagtgttcaaggaaatgctatttacatttgaatttttacc
aacacaatgccctgtcttaggtcacctgtaccactgggaaatgtttcaac
agtcactcccaaggactggcttccacccggggagggcaaagagggaaaga
gaatgtcccagggcaaggacgggtggaagaggttcagataggagatcagt
taaaagcaacactgtgattttagccaacaacacttgatgtcagactccag
caaatatatgcaaatgcatacaccttagtttctagaagtaagaggaagtc
atgtcccaaattgaggtctgttttgtagacatggtcctgctatttaacca
tttatgtttctatgtgtctctatttgactactccctctgccccacccatt
gtggcccccatttccttcatcccttagccctgattttctttcttcataag
gcttaagcttctgtttaattactgctttacttcttaactaaagcatcaac
cttttcatccctccccagagagtcatttaattgaagaataaaaattaagt
gacactctgggtctggaagagagtgctcaagttcattcaactccaagtct
aacagtcctctctcggaaggacacatcacctcctgagggtttcaaaattc
gtctcgtccaggaggaagctagacgccttagaatccctgcttcaagccat
atggcgtgagcctgcagacagacagtgcagttaccactcataaccagctc
cagcaagatactgctgttgc
gaattctccaaaaccactgtgccaacaaggaaaatgttgaatttttcatc
agctgcccaacgctgagcgttagtgggcaatccgttcattcatgaccaga
tgttcagtgtagtaacactctgcagttagcttgaaccttgtggcctgcct
accatgggctgcaaggacgttggctacaagctggcactggagaattgggg
cccgcacaagcaaaagaccaaagtgtgtgtctgtggcttcctggttttca
ccagcgaccagacgaggtagggaatgctgaaaggaaccagtgagttccat
caatcatcctggaggcctgcagcattgactctgtgatggtgtctggtggg
gaggggcgcactcggcagattcttacagtccttttgatttaggggaagaa
aagctatctttgtgtcaccggacagagggttgtttttttttttttttttt
ttttttttttttttccaacctgtatgtaaactatcaaagtttttgggatg
gagacatgaaatgtgggtcggtcaggcaaaaaaggcaaagctttctaatt
ttaaaccaaaaaagacaagacaacttaatttgtcatattgaaatcttatt
acaaccaatctaaaattggaaatatgtgctttctgttttttctttccttt
tggcaaacttcataactgtaggggggaacactcaaaccttccattcatgc
tgtttcttgtttttttcctgtcgtgtcttgggtctcatgctttttttgtg
agctccaggccatgtgctcaaaaagaagaaaaaactttggggggaaccat
ggggggtttgattttttctttggaaaggacgctcccacccccctttaaga
tgggctgtgggggagccccaacctgcaagggcgggttgatctgtgagggt
cctccttcccctacctagccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99111657_99112842
seq2: B6Ng01-092O18.b_44_1213

seq1  GAATTCAACTATTTGGGAGGTGGAGACAAGAGGATCCAGAATTCTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTATTTGGGAGGTGGAGACAAGAGGATCCAGAATTCTTGGCT  50

seq1  GGCTTTGGGTACATAGTAATTTCCATGCCAGCAGCCTAGCTACATGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGGTACATAGTAATTTCCATGCCAGCAGCCTAGCTACATGAGAA  100

seq1  GCTGTCTCAGAGAGAACATCAGACAGCCCTTACCAAAAGCCTCACTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCAGAGAGAACATCAGACAGCCCTTACCAAAAGCCTCACTCCTA  150

seq1  AGAATTTGATTCAAATTTTAAGAAAGTAGTTTGAAGGTTTGTCCGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGATTCAAATTTTAAGAAAGTAGTTTGAAGGTTTGTCCGTTTCT  200

seq1  TGTATGGCATTTCCCAACAATTTCTCTATGGAAAAGTTACCAAATTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCATTTCCCAACAATTTCTCTATGGAAAAGTTACCAAATTTCCT  250

seq1  CAAGATATTTCATTCCTTTTTTTTTTTCCCCTCTCAAATACCTGATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATTTCATTCCTTTTTTTTTTTCCCCTCTCAAATACCTGATAATA  300

seq1  AATGGTACCACAACTACACATAAGATAAATGAATCAAGGGCAAACCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACCACAACTACACATAAGATAAATGAATCAAGGGCAAACCTGCC  350

seq1  TTGTTATCAGGAGCAAAAACTCAAAATATTTCCTGATCCCACAGGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCAGGAGCAAAAACTCAAAATATTTCCTGATCCCACAGGGTGGG  400

seq1  AAAGCAAATCCAGTGTTCAAGGAAATGCTATTTACATTTGAATTTTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAATCCAGTGTTCAAGGAAATGCTATTTACATTTGAATTTTTACC  450

seq1  AACACAATGCCCTGTCTTAGGTCACCTGTACCACTGGGAAATGTTTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATGCCCTGTCTTAGGTCACCTGTACCACTGGGAAATGTTTCAAC  500

seq1  AGTCACTCCCAAGGACTGGCTTCCACCCGGGGAGGGCAAAGAGGGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCCCAAGGACTGGCTTCCACCCGGGGAGGGCAAAGAGGGAAAGA  550

seq1  GAATGTCCCAGGGCAAGGACGGGTGGAAGAGGTTCAGATAGGAGATCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCCAGGGCAAGGACGGGTGGAAGAGGTTCAGATAGGAGATCAGT  600

seq1  TAAAAGCAACACTGTGATTTTAGCCAACAACACTTGATGTCAGACTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAACACTGTGATTTTAGCCAACAACACTTGATGTCAGACTCCAG  650

seq1  CAAATATATGCAAATGCATACACCTTAGTTTCTAGAAGTAAGAGGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATGCAAATGCATACACCTTAGTTTCTAGAAGTAAGAGGAAGTC  700

seq1  ATGTCCCAAATTGAGGTCTGTTTTGTAGACATGGTCCTGCTATTTAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCAAATTGAGGTCTGTTTTGTAGACATGGTCCTGCTATTTAACCA  750

seq1  TTTATGTTTCTATGTGTCTCTATTTGACTACTCCCTCTGCCCCACCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTCTATGTGTCTCTATTTGACTACTCCCTCTGCCCCACCCATT  800

seq1  GTGGCCCCCATTTCCTTCATCCCTTAGCCCTGATTTTCTTTCTTCATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCCCATTTCCTTCATCCCTTAGCCCTGATTTTCTTTCTTCATAAG  850

seq1  GCTTAAGCTTCTGTTTAATTACTGCTTTACTTCTTAACTAAAGCATCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGCTTCTGTTTAATTACTGCTTTACTTCTTAACTAAAGCATCAAC  900

seq1  CTTTTCATCCCTCCCCAGAGAGTCATTTTAATTGAAGAATAAAAATTTAG  950
      ||||||||||||||||||||||||| ||||||||||||||||||| ||| 
seq2  CTTTTCATCCCTCCCCAGAGAGTCA-TTTAATTGAAGAATAAAAA-TTAA  948

seq1  GTGACACTCTGGGGTCTGGAAGAGAGTGGCTCAAGGTTCATTCAACTCCA  1000
      |||||||||| |||||||||||||||| |||||| |||||||||||||||
seq2  GTGACACTCT-GGGTCTGGAAGAGAGT-GCTCAA-GTTCATTCAACTCCA  995

seq1  AGTCTAACAGTCACTCTCTTCGGAAGGACACATCACCTCCTGAGGGTTTC  1050
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  AGTCTAACAGTC-CTCTC-TCGGAAGGACACATCACCTCCTGAGGGTTTC  1043

seq1  AAAATTCGTCTCGTCCAGGAGGAAGGCTAGACGCCTAAGAATACGCTGCT  1100
      |||||||||||||||||||||||| ||||||||||| ||||| | |||||
seq2  AAAATTCGTCTCGTCCAGGAGGAA-GCTAGACGCCTTAGAAT-CCCTGCT  1091

seq1  TCCAGGCATATGGC-TGAGCCTGCAGCACAGACAGTGGCTCAGTTACCAC  1149
      || || |||||||| ||||||||||| ||||||||||   ||||||||||
seq2  TCAAGCCATATGGCGTGAGCCTGCAG-ACAGACAGTG---CAGTTACCAC  1137

seq1  TCAGCACCCCAGCTCCCAGGCAAGTACCTGCTGTTGC  1186
      |||  |  ||||||||   |||||   ||||||||||
seq2  TCATAA--CCAGCTCC--AGCAAGATACTGCTGTTGC  1170

seq1: chr6_99288632_99289560
seq2: B6Ng01-092O18.g_70_993 (reverse)

seq1  GAATGGCTAGGGGTAGGTGAGAGAGGACCCTCACAGGATCAAACCTGCCC  50
      |||||||||  |||||| ||  ||||||||||||| |||| |||| ||||
seq2  GAATGGCTA--GGTAGGGGAAGGAGGACCCTCACA-GATC-AACCCGCCC  46

seq1  TTGCAGGTATGGGGCTCCCCCACAGCCATACTTAAAGTGGGGCTGGGAGC  100
      |||||||| ||||||||||||||||||   ||||||| |||| |||||||
seq2  TTGCAGGT-TGGGGCTCCCCCACAGCCCATCTTAAAG-GGGGGTGGGAGC  94

seq1  GTCCTTTCCAAAGTAGAAAATCAAA-CCCCCATGGTTCCACCTAA--GTC  147
      ||||||||||||| | ||||||||| ||||||||||||| || ||   | 
seq2  GTCCTTTCCAAAG-AAAAAATCAAACCCCCCATGGTTCCCCCCAAAGTTT  143

seq1  TCTCTTCTCTCTGAGCACTATGACCTAGAGCTCACAAAAATAGCATGAGA  197
      | |||||| | ||||||| ||| ||| ||||||||||||| |||||||||
seq2  TTTCTTCTTTTTGAGCAC-ATGGCCTGGAGCTCACAAAAAAAGCATGAGA  192

seq1  CCCAAGACACGACAGGAAAGAAACAAGAAACAGCATGAATGGAAGGTCTG  247
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  CCCAAGACACGACAGGAAAAAAACAAGAAACAGCATGAATGGAAGGTTTG  242

seq1  AGTGTTCCCACCTACAGTTATGAAGTTTGCCAAAAGGAAAGAAAAAACAG  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCCCCCTACAGTTATGAAGTTTGCCAAAAGGAAAGAAAAAACAG  292

seq1  AAAGCACATATTTCCAATTCTAGATTGGTTGTAATAAGATTTCAATATGA  347
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAGCACATATTTCCAATTTTAGATTGGTTGTAATAAGATTTCAATATGA  342

seq1  CAAATTAAGTTGTCTTGTCTCTTCTGGTTTAAAATTAGAAAGCTTTGCCT  397
      |||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  CAAATTAAGTTGTCTTGTCTTTTTTGGTTTAAAATTAGAAAGCTTTGCCT  392

seq1  TTTCTGCCTGACCGACCCACATCTCATGTCTCCATCCCAAAAACTTTGAT  447
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTTGCCTGACCGACCCACATTTCATGTCTCCATCCCAAAAACTTTGAT  442

seq1  AGTTTACATACAGGTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACATACAGGTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  492

seq1  CAACCCTCTGTCCGGTGACACAAAGATAGCTTTTCTTCCCCTAAATCAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTCTGTCCGGTGACACAAAGATAGCTTTTCTTCCCCTAAATCAAA  542

seq1  AGGACTGTAAGAATCTGCCGAGTGCGCCCCTCCCCACCAGACACCATCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTAAGAATCTGCCGAGTGCGCCCCTCCCCACCAGACACCATCAC  592

seq1  AGAGTCAATGCTGCAGGCCTCCAGGATGATTGATGGAACTCACTGGTTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAATGCTGCAGGCCTCCAGGATGATTGATGGAACTCACTGGTTCC  642

seq1  TTTCAGCATTCCCTACCTCGTCTGGTCGCTGGTGAAAACCAGGAAGCCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATTCCCTACCTCGTCTGGTCGCTGGTGAAAACCAGGAAGCCAC  692

seq1  AGACACACACTTTGGTCTTTTGCTTGTGCGGGCCCCAATTCTCCAGTGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACACTTTGGTCTTTTGCTTGTGCGGGCCCCAATTCTCCAGTGCC  742

seq1  AGCTTGTAGCCAACGTCCTTGCAGCCCATGGTAGGCAGGCCACAAGGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTAGCCAACGTCCTTGCAGCCCATGGTAGGCAGGCCACAAGGTTC  792

seq1  AAGCTAACTGCAGAGTGTTACTACACTGAACATCTGGTCATGAATGAACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACTGCAGAGTGTTACTACACTGAACATCTGGTCATGAATGAACG  842

seq1  GATTGCCCACTAACGCTCAGCGTTGGGCAGCTGATGAAAAATTCAACATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCCACTAACGCTCAGCGTTGGGCAGCTGATGAAAAATTCAACATT  892

seq1  TTCCTTGTTGGCACAGTGGTTTTGGAGAATTC  929
      ||||||||||||||||||||||||||||||||
seq2  TTCCTTGTTGGCACAGTGGTTTTGGAGAATTC  924