BAC Information

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BAC

Clone NameB6Ng01-093O06
Chromosome9 (Build37)6 (Build37)
Map Location 29,392,160 - 29,392,45939,496,195 - 39,496,760
singlet/doubletsingletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093O06.bB6Ng01-093O06.g
ACCDH905253DH905254
length546559
definitionDH905253|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O06, 5' end.DH905254|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,392,160 - 29,392,459)(39,496,195 - 39,496,760)
sequence
ctacaacttggcaacaacaaggaaaccccaacattattttaaaatgggtg
aatagcttgaacagatagttctccagtaaagaaataaaaattgcatacgt
tgtcaatgagcacatggtaaaatgtttcacactgtaatcattaggggact
gccactcaaaacaatcagctgtcaccacttgcatccatcaggacactata
aaaaacacaaatagcaggggctagagagatgcctcagtggttaaaagtga
aatggccaaccagcaggaccagagcccatactccaaaaacctcttagctc
ttaagcccagtgagtccaggtagtaaaacagtgaacactagcccccatgc
aacaaaacgaaagcaatagtcgccaatgtgtatccattttaccaccaaag
tgtcttctaaaaagtcgcccttggcgttgcttcttggttttgcttctctg
aaaaatagtctcatgcaatagccaggtggccctccccccgcagcctctag
agcactgggttatatacgcataggcatgcaccaccgctcctaacct
aaggccagcttggtttacagagtattccaggatagccaaagccacagaga
atccctgtcttgaaaaccaaaaacaatcaccaaaaaattgtgtgtatgtg
tgtgtgtgtgtgtgcgcgcactgaacatgagtttgggtccctgcaaagac
cagaggtggtggtgagccacttgatgtgggtgctgggaactaaactttgg
ttctgagagagtggtaagcactcttaactcatgagtcatctctccagccc
tccctttgttacccaggctagtaactcaagtgattctcctgcctcagtct
cccaagaaactaagactctaggctcataacatctgactgaatttgtttta
tttctttttatgtctctactattgtctagcccactctagggctactgaga
atgagaggggtgatcagtgaatatcttttttgcaagagaggggctcgaga
gatatcacagtggataagacagctgcacatcttgatacctgagtttgatc
cgtgacatctaccattagaggaggaaggagaaaaacgccccacaaagctg
tcctctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29392160_29392459
seq2: B6Ng01-093O06.b_297_596 (reverse)

seq1  AGGCTAGGAGCGGTGGTGCATGCCTATGCGTCTATATCCCAGTGCTCTGG  50
      ||| ||||||||||||||||||||||||||| |||| ||||||||||| |
seq2  AGGTTAGGAGCGGTGGTGCATGCCTATGCGTATATAACCCAGTGCTCTAG  50

seq1  AGGCTGCGGGGGGAGGGCCACCTGGCTACTGCATGAGACTATATCTCAGA  100
      |||||||||||||||||||||||||||| ||||||||||||| | |||||
seq2  AGGCTGCGGGGGGAGGGCCACCTGGCTATTGCATGAGACTATTTTTCAGA  100

seq1  GAAGCAAAACCAAGAAGCAACGCCAAGGCTGACTTTTTAGAAGACACTTT  150
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAAGCAAAACCAAGAAGCAACGCCAAGGGCGACTTTTTAGAAGACACTTT  150

seq1  GGTGGTAAAATGGAAACACATTGGCGACTATTGCTTTCCTTCTGTTGCAT  200
      |||||||||||||| ||||||||||||||||||||||| || ||||||||
seq2  GGTGGTAAAATGGATACACATTGGCGACTATTGCTTTCGTTTTGTTGCAT  200

seq1  GGGGACTAGTGTTCACTGCTTTACTACCTGGACTCACTGAGCTTAAGAGC  250
      |||| ||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GGGGGCTAGTGTTCACTGTTTTACTACCTGGACTCACTGGGCTTAAGAGC  250

seq1  TCAGAGCTCTTAAGAGTAAGGGCTCTGTGGTTGCTGGTTGGCCATTTCAC  300
      | |||| | ||  ||||| ||||||||    |||||||||||||||||||
seq2  TAAGAGGTTTTTGGAGTATGGGCTCTGGTCCTGCTGGTTGGCCATTTCAC  300

seq1: chr6_39496195_39496760
seq2: B6Ng01-093O06.g_68_632

seq1  GAATTCAAGGCCAGCTTGGTTTACAGAGTATTCCAGGATAGCCAAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCTTGGTTTACAGAGTATTCCAGGATAGCCAAAGCCA  50

seq1  CAGAGAATCCCTGTCTTGAAAACCAAAAACAATCACCAAAAAATTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATCCCTGTCTTGAAAACCAAAAACAATCACCAAAAAATTGTGTG  100

seq1  TATGTGTGTGTGTGTGTGTGCGCGCACTGAACATGAGTTTGGGTCCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTGTGTGTGTGCGCGCACTGAACATGAGTTTGGGTCCCTGC  150

seq1  AAAGACCAGAGGTGGTGGTGAGCCACTTGATGTGGGTGCTGGGAACTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCAGAGGTGGTGGTGAGCCACTTGATGTGGGTGCTGGGAACTAAA  200

seq1  CTTTGGTTCTGAGAGAGTGGTAAGCACTCTTAACTCATGAGTCATCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTCTGAGAGAGTGGTAAGCACTCTTAACTCATGAGTCATCTCTC  250

seq1  CAGCCCTCCCTTTGTTACCCAGGCTAGTAACTCAAGTGATTCTCCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCCCTTTGTTACCCAGGCTAGTAACTCAAGTGATTCTCCTGCCT  300

seq1  CAGTCTCCCAAGAAACTAAGACTCTAGGCTCATAACATCTGACTGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCCAAGAAACTAAGACTCTAGGCTCATAACATCTGACTGAATTT  350

seq1  GTTTTATTTCTTTTTATGTCTCTACTATTGTCTAGCCCACTCTAGGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTCTTTTTATGTCTCTACTATTGTCTAGCCCACTCTAGGGCTA  400

seq1  CTGAGAATGAGAGGGGTGATCAGTGAAGATCTTTTTTGCAAAAGAGGGGT  450
      ||||||||||||||||||||||||||| ||||||||||||| ||||||| 
seq2  CTGAGAATGAGAGGGGTGATCAGTGAATATCTTTTTTGCAAGAGAGGGGC  450

seq1  TCGAGAGATATCACAGTGGATAAGAGAGCTGCAGATCTTGAGACCTGAGT  500
      ||||||||||||||||||||||||| ||||||| ||||||| ||||||||
seq2  TCGAGAGATATCACAGTGGATAAGACAGCTGCACATCTTGATACCTGAGT  500

seq1  TTGATCCCTGACATCTACCACATAGAGGAGGAAGGAGAAAAACGCCCCAC  550
      ||||||| ||||||||||||  ||||||||||||||||||||||||||||
seq2  TTGATCCGTGACATCTACCA-TTAGAGGAGGAAGGAGAAAAACGCCCCAC  549

seq1  AAAGCTGTCCTCTCAC  566
      ||||||||||||||||
seq2  AAAGCTGTCCTCTCAC  565