BAC Information

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BAC

Clone NameB6Ng01-094E19
Chromosome6 (Build37)
Map Location 8,832,893 - 8,967,746
singlet/doubletdoublet
Overlap geneLOC100040238, Nxph1
Upstream geneLOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094E19.bB6Ng01-094E19.g
ACCDH905559DH905560
length8801,095
definitionDH905559|Mus musculus domesticus DNA, BAC clone: B6Ng01-094E19, 5' end.DH905560|Mus musculus domesticus DNA, BAC clone: B6Ng01-094E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,832,893 - 8,833,661)(8,966,652 - 8,967,746)
sequence
gaattcacttcaggttcaacagatgaaggggtagagtgaacatattagaa
tccactaacatgcctatactttggttgtgaactgcaggtactgtaaagaa
caagttttcaatgtttgaagtaattatggtttgtggtagtttatcacaac
atctctgagaaactaaaactgctcatttttgtttatgtttatttatttca
atttattcatttaaattatatttaatatagttggtctctgatatctgtgg
gctctgctggtaattgattttgttttcctttttttttttaattaggtatt
ttcttcatttacatttcaaatgctatcccaaaaatcccccagaccctccc
cctcccactcccctacccaccaactcccacttcttggcattcccctgtac
tgaggcatataaagtttgcaagaccaagaggtctctcttcccaatgatgg
ccgactaggtcattttcttatacatatgcagctagagacactagctccag
gggtattggttagttcatattgttgttgcaaacccctttagctccttggg
tactttctctagctcctccattaggggccctatgttccatccaatagctg
actgtgagcatccacttctgtgtttgccagacaccggcatagcctcacaa
gagacagctttatcagggtcctttcagcaaaatcttgctagtgtatgcaa
tggtgtcaacgtttggatgctgattatgggatagaacccggatatggcag
tctctagatggtccatccttttgtctcagctctaaactctgtctctgtag
ctccttccatggtgttttgttcccaattctaaaaagggcaaaatgtcaca
ctttggtcttcattcttcttgagtttcatg

gaattccaaaggtgtatattgactaaagaatccacatttctgaagggcat
ggatacccaggtgtgggtaacactgcacccaggcacttgggtatattgtt
ctatagttatatcttgtatgcatgacacaactcctaaaagctttcagaag
aagattatttgcctttttattactcaataaccaactgccatctttcagtt
ttgcattttgcacatgaaaagcctaactccaactcagcattgagaactga
tagccacattatattatgaaatttagaagtgacagatccttagtgcttga
aagagccagatgacagaaaccatatctgtgacagctgacagacttttcaa
agctcagaaagcaaaagccagaaacatatgctgaagatcccaagtcatga
acaagcaccacagaaagattgaagagcaaactctatattgcctcatgccc
aactgtgcaagatttgagtttcacagacctcatctgtagattaccactga
atagtgttttattagacacaaggctaaaggtgtgggcttatattcaaatt
cttgaaaaacaataaactaagacctgctaaattaatctttgaccatatgt
ctgaaacaagaagggcaactgaagaatatatgatctgaaattatagtaga
ctatttaaacttaggaaaataaaagatttgtatttgttattagagctata
gataatgaagccactgaattcaatggccacagtgttattgccattctatt
taaaaaataagtttctttcaaaagctgatgttctagtagcagaaaaaaca
ccctgagcgacctaagtaatacagtgctgtttagaaagttaaaagattgt
gtttagaaatagtagcaaatccatgtcacaaaatgttaaagattgaagga
gtgcacctcacttgatgggccacggtagccaaagtagcaaacaaaatttc
tgagtccacagagaggccaatgctatactaggcccctccaaatggagtgg
aatccttgacctccatgtcatgcagttcttgttctggattcaacaggcct
cgtggttgattatgattatggaagcatctgggtgtttcattcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8832893_8833661
seq2: B6Ng01-094E19.b_45_813

seq1  GAATTCACTTCAGGTTCAACAGATGAAGGGGTAGAGTGAACATATTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCAGGTTCAACAGATGAAGGGGTAGAGTGAACATATTAGAA  50

seq1  TCCACTAACATGCCTATACTTTGGTTGTGAACTGCAGGTACTGTAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAACATGCCTATACTTTGGTTGTGAACTGCAGGTACTGTAAAGAA  100

seq1  CAAGTTTTCAATGTTTGAAGTAATTATGGTTTGTGGTAGTTTATCACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTCAATGTTTGAAGTAATTATGGTTTGTGGTAGTTTATCACAAC  150

seq1  ATCTCTGAGAAACTAAAACTGCTCATTTTTGTTTATGTTTATTTATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAGAAACTAAAACTGCTCATTTTTGTTTATGTTTATTTATTTCA  200

seq1  ATTTATTCATTTAAATTATATTTAATATAGTTGGTCTCTGATATCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCATTTAAATTATATTTAATATAGTTGGTCTCTGATATCTGTGG  250

seq1  GCTCTGCTGGTAATTGATTTTGTTTTCCTTTTTTTTTTTAATTAGGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTGGTAATTGATTTTGTTTTCCTTTTTTTTTTTAATTAGGTATT  300

seq1  TTCTTCATTTACATTTCAAATGCTATCCCAAAAATCCCCCAGACCCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTTACATTTCAAATGCTATCCCAAAAATCCCCCAGACCCTCCC  350

seq1  CCTCCCACTCCCCTACCCACCAACTCCCACTTCTTGGCATTCCCCTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTCCCCTACCCACCAACTCCCACTTCTTGGCATTCCCCTGTAC  400

seq1  TGAGGCATATAAAGTTTGCAAGACCAAGAGGTCTCTCTTCCCAATGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATATAAAGTTTGCAAGACCAAGAGGTCTCTCTTCCCAATGATGG  450

seq1  CCGACTAGGTCATTTTCTTATACATATGCAGCTAGAGACACTAGCTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTAGGTCATTTTCTTATACATATGCAGCTAGAGACACTAGCTCCAG  500

seq1  GGGTATTGGTTAGTTCATATTGTTGTTGCAAACCCCTTTAGCTCCTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTGGTTAGTTCATATTGTTGTTGCAAACCCCTTTAGCTCCTTGGG  550

seq1  TACTTTCTCTAGCTCCTCCATTAGGGGCCCTATGTTCCATCCAATAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTCTAGCTCCTCCATTAGGGGCCCTATGTTCCATCCAATAGCTG  600

seq1  ACTGTGAGCATCCACTTCTGTGTTTGCCAGACACCGGCATAGCCTCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGCATCCACTTCTGTGTTTGCCAGACACCGGCATAGCCTCACAA  650

seq1  GAGACAGCTTTATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCTTTATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAA  700

seq1  TGGTGTCAACGTTTGGATGCTGATTATGGGATAGAACCCGGATATGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCAACGTTTGGATGCTGATTATGGGATAGAACCCGGATATGGCAG  750

seq1  TCTCTAGATGGTCCATCCT  769
      |||||||||||||||||||
seq2  TCTCTAGATGGTCCATCCT  769


seq1: chr6_8966652_8967746
seq2: B6Ng01-094E19.g_68_1162 (reverse)

seq1  GGTGAATGTATACACACAGATGCTCCCATGATCCATAATCCACACAGAGG  50
      |||||||| | |||| |||||||| |||| || ||||||| ||   ||||
seq2  GGTGAATG-AAACACCCAGATGCTTCCATAAT-CATAATCAACCACGAGG  48

seq1  CCTTGTTTGAAT-CAGAACAAGAACTGCATGACATGGA-GTC-AGGATT-  96
      |||   |||||| ||||||||||||||||||||||||| ||| |||||| 
seq2  CCT--GTTGAATCCAGAACAAGAACTGCATGACATGGAGGTCAAGGATTC  96

seq1  CACTCCATTTTGAGGGGCTTGGTAATAGCATTGGCCTCTCTGT-GACTCA  145
      |||||||||| ||||||| | || ||||||||||||||||||| ||||||
seq2  CACTCCATTTGGAGGGGCCTAGT-ATAGCATTGGCCTCTCTGTGGACTCA  145

seq1  GAAATTTTGTTTTGCTACTTTGGCTACCGTGG-CCATCAAGTGAGGTGCA  194
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  GAAATTTTG-TTTGCTACTTTGGCTACCGTGGCCCATCAAGTGAGGTGCA  194

seq1  CTCCTTCAAATCTTTAACATTTTGTGACATGGATTTGCTACTATTTCTAA  244
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTC-AATCTTTAACATTTTGTGACATGGATTTGCTACTATTTCTAA  243

seq1  ACACAATCTTTTAACTTTCTAAACAGCACTGTATTACTTAGGTCGCTCAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATCTTTTAACTTTCTAAACAGCACTGTATTACTTAGGTCGCTCAG  293

seq1  GGTG-TTTTTCTGCTACTAGAACATCAGCTTTTGAAAGAAACTTATTTTT  343
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTTCTGCTACTAGAACATCAGCTTTTGAAAGAAACTTATTTTT  343

seq1  TAAATAGAATGGCAATAACACTGTGGCCATTGAATTCAGTGGCTTCATTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAATGGCAATAACACTGTGGCCATTGAATTCAGTGGCTTCATTA  393

seq1  TCTATAGCTCTAATAACAAATACAAATCTTTTATTTTCCTAAGTTTAAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCTCTAATAACAAATACAAATCTTTTATTTTCCTAAGTTTAAAT  443

seq1  AGTCTACTATAATTTCAGATCATATATTCTTCAGTTGCCCTTCTTGTTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACTATAATTTCAGATCATATATTCTTCAGTTGCCCTTCTTGTTTC  493

seq1  AGACATATGGTCAAAGATTAATTTAGCAGGTCTTAGTTTATTGTTTTTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATGGTCAAAGATTAATTTAGCAGGTCTTAGTTTATTGTTTTTCA  543

seq1  AGAATTTGAATATAAGCCCACACCTTTAGCCTTGTGTCTAATAAAACACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGAATATAAGCCCACACCTTTAGCCTTGTGTCTAATAAAACACT  593

seq1  ATTCAGTGGTAATCTACAGATGAGGTCTGTGAAACTCAAATCTTGCACAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGGTAATCTACAGATGAGGTCTGTGAAACTCAAATCTTGCACAG  643

seq1  TTGGGCATGAGGCAATATAGAGTTTGCTCTTCAATCTTTCTGTGGTGCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATGAGGCAATATAGAGTTTGCTCTTCAATCTTTCTGTGGTGCTT  693

seq1  GTTCATGACTTGGGATCTTCAGCATATGTTTCTGGCTTTTGCTTTCTGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGACTTGGGATCTTCAGCATATGTTTCTGGCTTTTGCTTTCTGAG  743

seq1  CTTTGAAAAGTCTGTCAGCTGTCACAGATATGGTTTCTGTCATCTGGCTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAAGTCTGTCAGCTGTCACAGATATGGTTTCTGTCATCTGGCTC  793

seq1  TTTCAAGCACTAAGGATCTGTCACTTCTAAATTTCATAATATAATGTGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCACTAAGGATCTGTCACTTCTAAATTTCATAATATAATGTGGC  843

seq1  TATCAGTTCTCAATGCTGAGTTGGAGTTAGGCTTTTCATGTGCAAAATGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTCTCAATGCTGAGTTGGAGTTAGGCTTTTCATGTGCAAAATGC  893

seq1  AAAACTGAAAGATGGCAGTTGGTTATTGAGTAATAAAAAGGCAAATAATC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAAAGATGGCAGTTGGTTATTGAGTAATAAAAAGGCAAATAATC  943

seq1  TTCTTCTGAAAGCTTTTAGGAGTTGTGTCATGCATACAAGATATAACTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGAAAGCTTTTAGGAGTTGTGTCATGCATACAAGATATAACTAT  993

seq1  AGAACAATATACCCAAGTGCCTGGGTGCAGTGTTACCCACACCTGGGTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATATACCCAAGTGCCTGGGTGCAGTGTTACCCACACCTGGGTAT  1043

seq1  CCATGCCCTTCAGAAATGTGGATTCTTTAGTCAATATACACCTTTGGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCCTTCAGAAATGTGGATTCTTTAGTCAATATACACCTTTGGAAT  1093

seq1  TC  1095
      ||
seq2  TC  1095


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