BAC Information

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BAC

Clone NameB6Ng01-095A21
Chromosome6 (Build37)
Map Location 43,186,952 - 43,314,418
singlet/doubletdoublet
Overlap geneArhgef5, Nobox, Tpk1
Upstream geneGstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47
Downstream geneLOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095A21.bB6Ng01-095A21.g
ACCDH906097DH906098
length1,1101,113
definitionDH906097|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A21, 5' end.DH906098|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,313,282 - 43,314,418)(43,186,952 - 43,188,088)
sequence
gaattcagtgtaaacaggtaaaatcttcgggaggcctcaaatactgactc
atttttaaggacctacatgttttaaaagcacaccacgtctcccaacagaa
gtcattatttgagtatttttattatcttattcattaggtttactccatgt
gtcaggcactgctttagaagacagaaaatagtgatgcccagtatacaatg
ggcagttcttcatgtttctggattcatgctaaggatggacagtcagggta
ttttgctataggatactggtgctgtctcagagagaggaggaagaacaggt
gtgtgttttgcagggcatgactaaccctctgtgaatctagggttgcaaga
caggaatgattgtgcatcacactctcacgagctggcagcgacagtcattc
tagtaaagctacaagccagtgcttagctcgggcatctctgagactaagaa
acccagaagtatcagattctcctacatgctcactcacaattttggacact
aagaatacatgttatattggggaaacaaagctcttggtgatcgagtcgag
tcgagtcgagtagtaatacaatgcttgggcctgacaggagggactcggca
gaggcctgggcagagagcatgaagtgagaatgcttaagggatgagagctt
cgacaacctctaaccactcagaaaggtgagatgaacagacctgaagatac
agcaaggagtagccagtagccatagtcacaagaagactgggacacaggca
tgcagagcactggagacaagaggtatctactttgatgttgcagcaaagga
cacatcacgcatgcagaagcacgggggcgtattgtaggttttgaaatagg
cacaaccaggagcttaaaatacacaatcagagtgtttgaagtgtagtact
ttccccttttctcgtttacttctctatggagatatataaagatcactacg
caacacaaagtgtcagagcatattcagcatcacttggcagactcaggaga
aagaggatgacatagctttctatgaagctgctgcagaaagactgatgggc
tctacagccagtgcaggctgtgctgtcaaggaaccatgacttctattgtt
gatctaaaat
gaattctttggaggtttctatccattatctatgccatgtattactttcaa
ataaaaattactgacaaattatggagttaatttgttgaattgagtgaagg
aacagatttaaaacatgaggtttaggaataagaagggggaattttaaaac
ctgatagatatctgggatatgcttccatcccagaacttgaaagacagagg
caggagaatctttaagagttcgatataaagagttccaggacagccagagt
ttcacagtgtgaccctgtctcaaaagaaatcaagcaaccaaacaagcaag
caagctaacaaggaaacaaacatagtcaggaaaagtgctatagtaccatt
tacaagggtttcacctgattatttttgtatctagagtataatagagcatt
ggacccttaaatgagctgaaaatgaacatcagataaaataacttgggatg
tttaaagatcctttagaaagatctgtaatgatgagctatcacatattttt
tagcctgagtacagatagaatagatttcatgtttagagcattgctcaatg
ccaccatgatggtgaatattagccttgttcaaaagaacacgtgttcttca
ttttgacattaacagataataattactgggtataaatggagatatggaca
catagtaagcgaccatttttttaattacttaggaagtgccctttactaca
tattgataaaactgcatatggatcattttgcttagccatcattaaaaaaa
aggtggagaccctcctgttattggtatttgttggaaatgtatgatctaga
aagcagtacattcttgactacctcagacaacttgtctctaaagccctctg
atttaaccatgatatataacatagtactataatcgtatagtgctatatca
gtatcattgatatcaaataactgactagatatcctaaggaagtccatgct
aagtgaagtatctttgtatcaagtatcttttgtagtttagtctgtatgat
gatgagctgactggtctacaggcctgtagaaaagagtctcacttcaggat
gttttctgatgatgacgtctatgcacaatttgttgttagctcgtactttg
agatgtggacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_43313282_43314418
seq2: B6Ng01-095A21.b_36_1145 (reverse)

seq1  ATTTTAGGATCAACAATAGAAGTGCACTGTGCTCCTGGGACCCAGCACAG  50
      |||||| |||||||||||||||| ||  ||  |||| |    ||||||||
seq2  ATTTTA-GATCAACAATAGAAGT-CATGGT--TCCTTG---ACAGCACAG  43

seq1  CCTGCACCCTGCCTGTAGAGCCCACTCAGTCTTTTCCTGCCAGCAGCTTT  100
      ||||||  ||| |||||||||||| |||||||||  ||| ||||||||| 
seq2  CCTGCA--CTGGCTGTAGAGCCCA-TCAGTCTTT--CTG-CAGCAGCTT-  86

seq1  CCATTAGAAAGCTATGTCACTCCTCTTTCTCCCTTGAGTCTGCCAAAGTG  150
       || ||||||||||||||| ||||||||||||  |||||||||| |||||
seq2  -CA-TAGAAAGCTATGTCA-TCCTCTTTCTCC--TGAGTCTGCC-AAGTG  130

seq1  ATGCTGAATATGGCTTCTGACACTTTTGTGGTTGGCGGTAGTGATCTTTA  200
      ||||||||||||   |||||||| ||||| ||||   |||||||||||||
seq2  ATGCTGAATATG--CTCTGACAC-TTTGT-GTTG--CGTAGTGATCTTTA  174

seq1  TATATCTCCATAGGAGAAGTAAACGAGAAAAGGGGAAAGTACTACACTTC  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATATCTCCATA-GAGAAGTAAACGAGAAAAGGGGAAAGTACTACACTTC  223

seq1  AAACACTCTGATTGTGTATTTTTAAGCTCCTGGTTGTGCCTATTTCAAAA  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAACACTCTGATTGTGTA-TTTTAAGCTCCTGGTTGTGCCTATTTCAAAA  272

seq1  CCTACAATACGCCCCCGTGCTTCTGCATGCCTGATGTGTCCTTTGCTGCA  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTACAATACGCCCCCGTGCTTCTGCATGCGTGATGTGTCCTTTGCTGCA  322

seq1  ACATCAAAGTAGATACCTCTTGTCTCCAGTGCTCTGCATGCCTGTGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAGTAGATACCTCTTGTCTCCAGTGCTCTGCATGCCTGTGTCCC  372

seq1  AGTCTTCTTGTGACTATGGCTACTGGCTACTCCTTGCTGTATCTTCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTTGTGACTATGGCTACTGGCTACTCCTTGCTGTATCTTCAGGT  422

seq1  CTGTTCATCTCACCTTTCTGAGTGGTTAGAGGTTGTCGAAGCTCTCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCTCACCTTTCTGAGTGGTTAGAGGTTGTCGAAGCTCTCATCC  472

seq1  CTTAAGCATTCTCACTTCATGCTCTCTGCCCAGGCCTCTGCCGAGTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCATTCTCACTTCATGCTCTCTGCCCAGGCCTCTGCCGAGTCCCT  522

seq1  CCTGTCAGGCCCAAGCATTGTATTACTACTCGACTCGACTCGACTCGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGGCCCAAGCATTGTATTACTACTCGACTCGACTCGACTCGATC  572

seq1  ACCAAGAGCTTTGTTTCCCCAATATAACATGTATTCTTAGTGTCCAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGCTTTGTTTCCCCAATATAACATGTATTCTTAGTGTCCAAAAT  622

seq1  TGTGAGTGAGCATGTAGGAGAATCTGATACTTCTGGGTTTCTTAGTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGAGCATGTAGGAGAATCTGATACTTCTGGGTTTCTTAGTCTCA  672

seq1  GAGATGCCCGAGCTAAGCACTGGCTTGTAGCTTTACTAGAATGACTGTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCCCGAGCTAAGCACTGGCTTGTAGCTTTACTAGAATGACTGTCG  722

seq1  CTGCCAGCTCGTGAGAGTGTGATGCACAATCATTCCTGTCTTGCAACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCTCGTGAGAGTGTGATGCACAATCATTCCTGTCTTGCAACCCT  772

seq1  AGATTCACAGAGGGTTAGTCATGCCCTGCAAAACACACACCTGTTCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACAGAGGGTTAGTCATGCCCTGCAAAACACACACCTGTTCTTCC  822

seq1  TCCTCTCTCTGAGACAGCACCAGTATCCTATAGCAAAATACCCTGACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTCTGAGACAGCACCAGTATCCTATAGCAAAATACCCTGACTGT  872

seq1  CCATCCTTAGCATGAATCCAGAAACATGAAGAACTGCCCATTGTATACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTAGCATGAATCCAGAAACATGAAGAACTGCCCATTGTATACTG  922

seq1  GGCATCACTATTTTCTGTCTTCTAAAGCAGTGCCTGACACATGGAGTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCACTATTTTCTGTCTTCTAAAGCAGTGCCTGACACATGGAGTAAA  972

seq1  CCTAATGAATAAGATAATAAAAATACTCAAATAATGACTTCTGTTGGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGAATAAGATAATAAAAATACTCAAATAATGACTTCTGTTGGGAG  1022

seq1  ACGTGGTGTGCTTTTAAAACATGTAGGTCCTTAAAAATGAGTCAGTATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTGTGCTTTTAAAACATGTAGGTCCTTAAAAATGAGTCAGTATTT  1072

seq1  GAGGCCTCCC-AAGATTTTACCTGTTTACACTGAATTC  1137
      |||||||||| |||||||||||||||||||||||||||
seq2  GAGGCCTCCCGAAGATTTTACCTGTTTACACTGAATTC  1110

seq1: chr6_43186952_43188088
seq2: B6Ng01-095A21.g_65_1177

seq1  GAATTCTTTGGAGGTTTCTATCCATTATCTATGCCATGTATTACTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAGGTTTCTATCCATTATCTATGCCATGTATTACTTTCAA  50

seq1  ATAAAAATTACTGACAAATTATGGAGTTAATTTGTTGAATTGAGTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTACTGACAAATTATGGAGTTAATTTGTTGAATTGAGTGAAGG  100

seq1  AACAGATTTAAAACATGAGGTTTAGGAATAAGAAGGGGGAATTTTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTTAAAACATGAGGTTTAGGAATAAGAAGGGGGAATTTTAAAAC  150

seq1  CTGATAGATATCTGGGATATGCTTCCATCCCAGAACTTGAAAGACAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGATATCTGGGATATGCTTCCATCCCAGAACTTGAAAGACAGAGG  200

seq1  CAGGAGAATCTTTAAGAGTTCGATATAAAGAGTTCCAGGACAGCCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAATCTTTAAGAGTTCGATATAAAGAGTTCCAGGACAGCCAGAGT  250

seq1  TTCACAGTGTGACCCTGTCTCAAAAGAAATCAAGCAACCAAACAAGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTGTGACCCTGTCTCAAAAGAAATCAAGCAACCAAACAAGCAAG  300

seq1  CAAGCTAACAAGGAAACAAACATAGTCAGGAAAAGTGCTATAGTACCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAACAAGGAAACAAACATAGTCAGGAAAAGTGCTATAGTACCATT  350

seq1  TACAAGGGTTTCACCTGATTATTTTTGTATCTAGAGTATAATAGAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGGTTTCACCTGATTATTTTTGTATCTAGAGTATAATAGAGCATT  400

seq1  GGACCCTTAAATGAGCTGAAAATGAACATCAGATAAAATAACTTGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTTAAATGAGCTGAAAATGAACATCAGATAAAATAACTTGGGATG  450

seq1  TTTAAAGATCCTTTAGAAAGATCTGTAATGATGAGCTATCACATATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATCCTTTAGAAAGATCTGTAATGATGAGCTATCACATATTTTT  500

seq1  TAGCCTGAGTACAGATAGAATAGATTTCATGTTTAGAGCATTGCTCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGAGTACAGATAGAATAGATTTCATGTTTAGAGCATTGCTCAATG  550

seq1  CCACCATGATGGTGAATATTAGCCTTGTTCAAAAGAACACGTGTTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGATGGTGAATATTAGCCTTGTTCAAAAGAACACGTGTTCTTCA  600

seq1  TTTTGACATTAACAGATAATAATTACTGGGTATAAATGGAGATATGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACATTAACAGATAATAATTACTGGGTATAAATGGAGATATGGACA  650

seq1  CATAGTAAGCGACCATTTTTTTAATTACTTAGGAAGTGCCCTTTACTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAAGCGACCATTTTTTTAATTACTTAGGAAGTGCCCTTTACTACA  700

seq1  TATTGATAAAACTGCATATGGATCATTTTGCTTAGCCATCATTAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAAAACTGCATATGGATCATTTTGCTTAGCCATCATTAAAAAAA  750

seq1  AGGTGGAGACCCTCCTGTTATTGGTATTTGTTGGAAATGTATGATCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGACCCTCCTGTTATTGGTATTTGTTGGAAATGTATGATCTAGA  800

seq1  AAGCAGTACATTCTTGACTACCTCAGACAACTTGTCTCTAAAGCCCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTACATTCTTGACTACCTCAGACAACTTGTCTCTAAAGCCCTCTG  850

seq1  ATTTTAACCATGATAATATAACAATAGTACTATAATCGTATAGTGCTATA  900
      | |||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  A-TTTAACCATGAT-ATATAAC-ATAGTACTATAATCGTATAGTGCTATA  897

seq1  TCAGTATCATTGATATCAAATAAACTGACTAGATATCCTAAGGAAGTCCA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAGTATCATTGATATCAAAT-AACTGACTAGATATCCTAAGGAAGTCCA  946

seq1  TGCTAAGTGAAGTATCTTTGTATCAAAGTATC-TTTGTAGTTTAGTCTGT  999
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  TGCTAAGTGAAGTATCTTTGTATC-AAGTATCTTTTGTAGTTTAGTCTGT  995

seq1  ATGATGATGAGCTGAACTGGTTCTACAAGGCCTGTAGAAAAGGAGGTCTC  1049
      |||||||||||||| ||||| ||||| |||||||||||||||   |||||
seq2  ATGATGATGAGCTG-ACTGG-TCTAC-AGGCCTGTAGAAAAG--AGTCTC  1040

seq1  ACTTCAGGGGATGTTTTTCCTGAATGATGACGTCTATGCACAATATTTGT  1099
      ||||||  |||||||||  ||| |||||||||||||||||||  ||||| 
seq2  ACTTCA--GGATGTTTT--CTG-ATGATGACGTCTATGCACA--ATTTG-  1082

seq1  TTGTTTAAGCTCCGTACTTTTAAAGGAATGTGGACATC  1137
      |||||  |||| ||||||||    |  |||||||||||
seq2  TTGTT--AGCT-CGTACTTT----GAGATGTGGACATC  1113