BAC Information

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BAC

Clone NameB6Ng01-095B20
Chromosome6 (Build37)
Map Location 17,289,569 - 17,444,164
singlet/doubletdoublet
Overlap geneCav1, Met
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2
Downstream geneCapza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095B20.bB6Ng01-095B20.g
ACCDH906141DH906142
length1,0121,075
definitionDH906141|Mus musculus domesticus DNA, BAC clone: B6Ng01-095B20, 5' end.DH906142|Mus musculus domesticus DNA, BAC clone: B6Ng01-095B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,443,026 - 17,444,164)(17,289,569 - 17,290,653)
sequence
gaattccattgtaccttagagagcttacaatgtatattaaacatgtgtgt
gggcagtacatcttcgtagggactggtgtgtccgtgttttgtgtactata
agactttggaggggaaaggagggaagctttgtctgtttcaccaaaggttg
tagttcctgaactcaataaaacagagaaataattttccatctaagaaagt
actccaggctcatcgagagccggcacgtgttcatgagccccagtccctct
cagcggaatgacataggttctcttcctatgagtctcttccaaagagactg
ctcttcccggttgcacttacaacctccgtttcttagactgaaaactgctt
gggcaagacacatgtttccaaagaccaagtgtttttaagactcaaagtga
cactatttgttcagttatggtccctgagggtcccctgttaggaggcacag
ccatgctctatgtgtaaatctaggcccaacacaacaattcccaagacaga
aatggacccccccttaggttggtactctttctctgtcacaaagtgatcaa
agggctagtagaaaaataattctatacttatagattccaaattctacttt
atttaaataaaaccaccaataattttcctatgctttcctgtaaaaaatac
catttttaatggtcatcaatctaaaacagaaagtgttggatgggaatcca
aatctaagccttaaagtaatattttcttttagttttattaatctgtctgt
ctgtgtctgtgtctgtgtctgtgtctgagtctgtgtctgtgtctctgtct
ctgtgtctgtgtctctgtctgtgtctgtgtctctgtgtctgtctctgtgt
ctgtgtctgtgtctgtgtctgtctctgtgtctgtgtctgtgtctctgtgt
ctgtgtctctgatctgtgtctctgtgtctgtgtctgtgtctctgtgtctg
tgtctctgtgtctgtgtctggtctgtctctggtcgagtctctatttctga
gtctgtgtctgg
gaattcattcccaccattctcatatatactacttgtctcttctaagctac
tgcatctatgtttgacagtctggaatgtttaaacccattcctgctctctc
ttttatatgtgaatcattgtttcattggctaaaatataaacatattgttg
aaagatgatttgagaaaaataggaaggactgggaggcagggaagagtacc
aacaacctcaactgcctactcaaaggtgatgatgtcatacaaagggaaga
gattcaggttacggccatttgtttaggggcatgaaggaacgtttttaata
tatgccagttatctaaggaattggttgctgtcctcactcttaacaatcca
gttagatttagggatttagggatcaccatcaatttggagactataatctt
catgataccaacaatgttttacttatcctggcattttaacctgttatttt
gtatgcctgaatatttgctatactgagaataagacctacgtgccttctaa
tttttcatgttttttttttttccaaataggatctaactcatctacttgca
tgatgccggcagctttcctaaaaacaaaacatacaaattgcacttgctag
ttctctgtacttgtttctgactctgaaatacagaacctgttgatgttgat
atctgtgctcagctatgtagcatctttctctctgttaagcctggtcaaca
ttaacccaatgaaatgatttgaagcagacaaatgggggtgagacctctct
ggactggcagaaagtagaagccagctttctctgccactcagcaactgaat
gaggccagcgtgtctattcagtttcactcattttcaagaataatcacagg
ttcctgactctaagccagcccctcaccaggatcaaggttagtgactgact
ggatgatttaggagctcaacattgtacttccttttcagctgatgagtgaa
cctccagggagggtgtcaaaaagagctgctaaaccgagactgccaggctg
ttgtaaacatgactctttttatgcaagccctgcaatagtctgcaatgctg
tgaagctcgacttcctctgcaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17443026_17444164
seq2: B6Ng01-095B20.b_43_1053 (reverse)

seq1  CAGACACAGACACAGAAATAGAGACACAGACACAGAGACTCAGACACAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACACAGACAAAGAGACACAGACACAGAGACACAGACACAGACACAGAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGACACAGAGACACAGACACACAGACACAGACACAGAAATAGAGACA  150
                              ||||||||||| ||||||||||||| 
seq2  ------------------------CAGACACAGACTCAGAAATAGAGACT  26

seq1  CAGACACAGAGACAGACACAGACACAGACACAGAGACACAGACACAGAGA  200
      | ||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  C-GAC-CAGAGACAGAC-CAGACACAGACACAGAGACACAGACACAGAGA  73

seq1  CACAGACACAGACACAGAGACACAGACACAGAGACACAGACACAGAGACA  250
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CACAGACACAGACACAGAGACACAGA-TCAGAGACACAGACACAGAGACA  122

seq1  CAGACACAGACACAGAGACAGACACAGACACAGACACAGACACAGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGACACAGAGACAGACACAGACACAGACACAGACACAGAGACA  172

seq1  GACACAGAGACACAGACACAGACAGAGACACAGACACAGAGACAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGACACAGACACAGACAGAGACACAGACACAGAGACAGAGACA  222

seq1  CAGACACAGACTCAGACACAGACACAGACACAGACACAGACAGACAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGACTCAGACACAGACACAGACACAGACACAGACAGACAGATT  272

seq1  AATAAAACTAAAAGAAAATATTACTTTAAGGCTTAGATTTGGATTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTAAAAGAAAATATTACTTTAAGGCTTAGATTTGGATTCCCAT  322

seq1  CCAACACTTTCTGTTTTAGATTGATGACCATTAAAAATGGTATTTTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTTTCTGTTTTAGATTGATGACCATTAAAAATGGTATTTTTTAC  372

seq1  AGGAAAGCATAGGAAAATTATTGGTGGTTTTATTTAAATAAAGTAGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCATAGGAAAATTATTGGTGGTTTTATTTAAATAAAGTAGAATT  422

seq1  TGGAATCTATAAGTATAGAATTATTTTTCTACTAGCCCTTTGATCACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTATAAGTATAGAATTATTTTTCTACTAGCCCTTTGATCACTTT  472

seq1  GTGACAGAGAAAGAGTACCAACCTAAGGGGGGGTCCATTTCTGTCTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAGAAAGAGTACCAACCTAAGGGGGGGTCCATTTCTGTCTTGGG  522

seq1  AATTGTTGTGTTGGGCCTAGATTTACACATAGAGCATGGCTGTGCCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTGTGTTGGGCCTAGATTTACACATAGAGCATGGCTGTGCCTCCT  572

seq1  AACAGGGGACCCTCAGGGACCATAACTGAACAAATAGTGTCACTTTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGACCCTCAGGGACCATAACTGAACAAATAGTGTCACTTTGAGT  622

seq1  CTTAAAAACACTTGGTCTTTGGAAACATGTGTCTTGCCCAAGCAGTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAACACTTGGTCTTTGGAAACATGTGTCTTGCCCAAGCAGTTTTC  672

seq1  AGTCTAAGAAACGGAGGTTGTAAGTGCAACCGGGAAGAGCAGTCTCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGAAACGGAGGTTGTAAGTGCAACCGGGAAGAGCAGTCTCTTTG  722

seq1  GAAGAGACTCATAGGAAGAGAACCTATGTCATTCCGCTGAGAGGGACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACTCATAGGAAGAGAACCTATGTCATTCCGCTGAGAGGGACTGG  772

seq1  GGCTCATGAACACGTGCCGGCTCTCGATGAGCCTGGAGTACTTTCTTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATGAACACGTGCCGGCTCTCGATGAGCCTGGAGTACTTTCTTAGA  822

seq1  TGGAAAATTATTTCTCTGTTTTATTGAGTTCAGGAACTACAACCTTTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATTATTTCTCTGTTTTATTGAGTTCAGGAACTACAACCTTTGGT  872

seq1  GAAACAGACAAAGCTTCCCTCCTTTCCCCTCCAAAGTCTTATAGTACACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGACAAAGCTTCCCTCCTTTCCCCTCCAAAGTCTTATAGTACACA  922

seq1  AAACACGGACACACCAGTCCCTACGAAGATGTACTGCCCACACACATGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGGACACACCAGTCCCTACGAAGATGTACTGCCCACACACATGTT  972

seq1  TAATATACATTGTAAGCTCTCTAAGGTACAATGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  TAATATACATTGTAAGCTCTCTAAGGTACAATGGAATTC  1011

seq1: chr6_17289569_17290653
seq2: B6Ng01-095B20.g_68_1142

seq1  GAATTCATTCCCACCATTCTCATATATACTACTTGTCTCTTCTAAGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCACCATTCTCATATATACTACTTGTCTCTTCTAAGCTAC  50

seq1  TGCATCTATGTTTGACAGTCTGGAATGTTTAAACCCATTCCTGCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTATGTTTGACAGTCTGGAATGTTTAAACCCATTCCTGCTCTCTC  100

seq1  TTTTATATGTGAATCATTGTTTCATTGGCTAAAATATAAACATATTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGTGAATCATTGTTTCATTGGCTAAAATATAAACATATTGTTG  150

seq1  AAAGATGATTTGAGAAAAATAGGAAGGACTGGGAGGCAGGGAAGAGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATTTGAGAAAAATAGGAAGGACTGGGAGGCAGGGAAGAGTACC  200

seq1  AACAACCTCAACTGCCTACTCAAAGGTGATGATGTCATACAAAGGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTCAACTGCCTACTCAAAGGTGATGATGTCATACAAAGGGAAGA  250

seq1  GATTCAGGTTACGGCCATTTGTTTAGGGGCATGAAGGAACGTTTTTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGTTACGGCCATTTGTTTAGGGGCATGAAGGAACGTTTTTAATA  300

seq1  TATGCCAGTTATCTAAGGAATTGGTTGCTGTCCTCACTCTTAACAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGTTATCTAAGGAATTGGTTGCTGTCCTCACTCTTAACAATCCA  350

seq1  GTTAGATTTAGGGATTTAGGGATCACCATCAATTTGGAGACTATAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTTAGGGATTTAGGGATCACCATCAATTTGGAGACTATAATCTT  400

seq1  CATGATACCAACAATGTTTTACTTATCCTGGCATTTTAACCTGTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATACCAACAATGTTTTACTTATCCTGGCATTTTAACCTGTTATTTT  450

seq1  GTATGCCTGAATATTTGCTATACTGAGAATAAGACCTACGTGCCTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCTGAATATTTGCTATACTGAGAATAAGACCTACGTGCCTTCTAA  500

seq1  TTTTTCATGTTTTTTTTTTTTCCAAATAGGATCTAACTCATCTACTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATGTTTTTTTTTTTTCCAAATAGGATCTAACTCATCTACTTGCA  550

seq1  TGATGCCGGCAGCTTTCCTAAAAACAAAACATACAAATTGCACTTGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCGGCAGCTTTCCTAAAAACAAAACATACAAATTGCACTTGCTAG  600

seq1  TTCTCTGTACTTGTTTCTGACTCTGAAATACAGAACCTGTTGATGTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTACTTGTTTCTGACTCTGAAATACAGAACCTGTTGATGTTGAT  650

seq1  ATCTGTGCTCAGCTATGTAGCATCTTTCTCTCTGTTAAGCCTGGTCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCTCAGCTATGTAGCATCTTTCTCTCTGTTAAGCCTGGTCAACA  700

seq1  TTAACCCAATGAAATGATTTGAAGCAGACAAATGGGGGTGAGACCTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCAATGAAATGATTTGAAGCAGACAAATGGGGGTGAGACCTCTCT  750

seq1  GGACTGGCAG-AAGTAGAAGCCAGCTTTCCCTGCCACTCAGCAACTGAAT  799
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  GGACTGGCAGAAAGTAGAAGCCAGCTTTCTCTGCCACTCAGCAACTGAAT  800

seq1  GAGGCCAGCGTGTCTATTCAGTTTCACTCATTTTCAAGAATAATCACAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCGTGTCTATTCAGTTTCACTCATTTTCAAGAATAATCACAGG  850

seq1  TTCCTGACTCTAAGCCAGCCCCTCACCAGGATCAAGGTTTAGTGACTGAC  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCCTGACTCTAAGCCAGCCCCTCACCAGGATCAAGG-TTAGTGACTGAC  899

seq1  TGGGATGATTTAGGAGCTCAACATTGTACTTCCTTTTCAGCTGATGAGTG  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GGATGATTTAGGAGCTCAACATTGTACTTCCTTTTCAGCTGATGAGTG  948

seq1  AACCTCCAGGGAGGGGTGTCAAAAAGGAGGCTGCTAAACCGAGACTGCCA  999
      |||||||||||| |||||||||||||   |||||||||||||||||||| 
seq2  AACCTCCAGGGA-GGGTGTCAAAAAG--AGCTGCTAAACCGAGACTGCC-  994

seq1  AGCCTGTTGTAAACATGACCCCTTTTATGCAAAGCCCTTGCAATAGTCTG  1049
      || |||||||||||||||| | |||||||| |||||| ||||||||||||
seq2  AGGCTGTTGTAAACATGACTCTTTTTATGC-AAGCCC-TGCAATAGTCTG  1042

seq1  CAATGCTGTGAAGCTCGACCTTTCCCCCTGCAAGGA  1085
      |||||||||||||||||||   | || |||||||||
seq2  CAATGCTGTGAAGCTCGAC---TTCCTCTGCAAGGA  1075