BAC Information

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BAC

Clone NameB6Ng01-095H19
Chromosome6 (Build37)
Map Location 45,797,193 - 45,930,595
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095H19.bB6Ng01-095H19.g
ACCDH906417DH906418
length1,2051,133
definitionDH906417|Mus musculus domesticus DNA, BAC clone: B6Ng01-095H19, 5' end.DH906418|Mus musculus domesticus DNA, BAC clone: B6Ng01-095H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,929,357 - 45,930,595)(45,797,193 - 45,798,354)
sequence
gaattctgtagttttgacaatgcaaaaatccatgattctaccaggaaaag
cttgtttagactgtgaagttaaaaaaatgaatgtaagaagcagacatcaa
gcagatactcatgtctcatgtaccttatatttcaaaggattcctaggatt
caacttgggtttcttaaactgtcactagttgcattaaaaacatcagtctc
agtgtcatcatctgtgaacaaagatcactttgagccataactggggtaat
acctgtattgttagagtacacacctttctgatggtgccttttctcccctc
taagagcttcatcatgcttaaattatttattccttggaactgaagaattt
tgaaagaatatttccagtattaactctgtctgagtatttaataaagaaag
tactacagaggcctagtatagaatagaaccttaatgaaggtcaaaaaatc
ctctttaaaccacttaatacaggttggtcagatggctctgtaggtaaaac
gacttgctgtgtaagcctggtaacatgaggtttagttctagaaccctcta
aaaagcagaaagggaactatgtaatcttgttctgggaccccctgccacac
ataaattaataaattataatgataaaatattttaaatgaaaaacattaaa
tattttaattcactgaactttctcaattgttaagacacaatttcagagat
atgtcacttggttagctattcaatattcttttgctctagggtggcactaa
atcaaagtcataagaaaacaagcaacatgtaaaataagctactcctttaa
aattacaaactttaattgtcccaattgttaaatattttccaaaagctcac
acaaattgtttatgtaaccagagaatatgtgagctaactagtgcacagta
tcatcttaaacttgtggtgtctatttcctaaaggtatgtggagtcgatgc
atttactctatctgtgaggactgacatgtgctcaggtggtgagggcttgt
ttctagggttatacacagactgcttttatgtaaagttgattcatatactt
tgggcagaactacctcagctaaatagatggagagctcaaatgtaccatgc
gtgtggaatatctggcattactttgtgctgagggttcgtgtctggtctgc
aggctctatgggttctgtgggcggtatcccaaccgctcagtggcttgggc
cgtag
gaattctttaatgatctaagttgtaacacagtgaagcagacagcaaagca
aggaaggatcaagttgggggaaaggcaccataggaggaaaagtaggttct
ctgtaggaacttattcagaaatgaggtatggtggagaaggaaagtttttg
gaaagagttctgaatgggctgagccctcataagagaagaggaaggactac
ggtgtcttagggtatacactggaatgtcacctacagatgagcaaaagggt
tcagtttgaattcagacagatgactgtcacctaccttgctacttcattaa
aatgagcagaagagggccaggagaagcataaacccagctaataacatagt
tcagagccttgtgagggagtgctgacctcacagaaaaagataaaggagta
cattttagatagattttggggaataaatgacaagatgcattacatggtca
tgacatcaaactgatttctaaatgtttttatactctcagacatgccttgc
tgtcaaccttgctctctgatgcttctttttgtactgtacaaggattgata
ttgaaatgcataaaatggacaaagcactgagaataggaaactgagtattc
agtccataatgagatatctttttcaataccctgtattcccaaggctcagg
gaataatagggaaggggagcaatcttacattaataataatttcaaggcaa
gaagtaactatttccaataaactttaagtggcagcatatttgaagccaac
taccaggttaacaaatataatcttattcattctttaaaattcaaattgtt
tcatacatatttcagtggtgatagtatatgctgtccatatgctccagtac
cacatgtcagtccaaacagatcatattctagaattaaatcatatgggaaa
atgcttattttcctaaaatgcaattacaggctgagacaaatgtaacacct
atttttctattgtctggcatttagtacatatgcctcccatatatttatta
tatttaactataatataagacaaaattatttctcactgggtagcactatg
ccagtaggatgacccttacggcagtgatctgagcttggatctgtggcaaa
cttgctatgtcacctttttacacgttattagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45929357_45930595
seq2: B6Ng01-095H19.b_47_1251 (reverse)

seq1  CTACTGCCCAAGCCACTGAAGTGTGAGGATGACCGGGCCACAGAGAACCA  50
      |||| ||||||||||||||   ||  |||| ||| | ||||||| | |||
seq2  CTACGGCCCAAGCCACTGAGCGGTTGGGAT-ACC-GCCCACAGA-ACCCA  47

seq1  TTTAGAGCTTTGGCAGACAGGACAGGGACCCCTCTAGCACAGAGTAATGG  100
        |||||| |  ||||||  ||||  || ||||| |||||| |||||| |
seq2  --TAGAGCCT--GCAGACCAGACA-CGAACCCTC-AGCACAAAGTAAT-G  90

seq1  GCAGATTATTTCACA-GCATGTGTACATTTTGAGCTTTCTTCATCCTATT  149
       |||| |||| |||| ||||| ||||| |||||||  ||| ||| |||||
seq2  CCAGA-TATTCCACACGCATG-GTACA-TTTGAGC--TCTCCAT-CTATT  134

seq1  TTATGCTTGAGGTAAGTTCTGCCCAAAGGTATATGAAATCAAACTCTACA  199
      |   || |||||| ||||||||||||| ||||||| |||| |||| ||||
seq2  T--AGC-TGAGGT-AGTTCTGCCCAAA-GTATATG-AATC-AACTTTACA  177

seq1  TAAAAGCAGTCCTGGTGTATAAAACCCTAGAAACAAGCCCTCAACACACT  249
      |||||||||||    ||| || ||||||||||||||||||||| ||| ||
seq2  TAAAAGCAGTC----TGTGTATAACCCTAGAAACAAGCCCTCACCAC-CT  222

seq1  GAGCACATGTTCAGTCCCTCACAGATAGGAGTAAATTGCATCGACT-CAC  298
      ||||||||| ||||| ||||||||||| ||||||| |||||||||| |||
seq2  GAGCACATG-TCAGT-CCTCACAGATA-GAGTAAA-TGCATCGACTCCAC  268

seq1  ATAACCTTTAAGGAAATAGAACACACAAGTTTAAGATGATACTGTGCACT  348
      || |||||| ||||||||||   |||||||||||||||||||||||||||
seq2  AT-ACCTTT-AGGAAATAGACACCACAAGTTTAAGATGATACTGTGCACT  316

seq1  AGTTAGCTCACATATTTCTCTGGTTACATAAACAATTTGTGTGAGCTTTT  398
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTTAGCTCACATA-TTCTCTGGTTACATAAACAATTTGTGTGAGCTTTT  365

seq1  GGAAAAATATTTAACAATTGGGACAATTAAAGTTTGTAATTTTAAAGGAG  448
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-AAAATATTTAACAATTGGGACAATTAAAGTTTGTAATTTTAAAGGAG  414

seq1  TAGCTTATTTTACATGTTGCTTGTTTTCTTATGACTTTGATTTAGTGCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATTTTACATGTTGCTTGTTTTCTTATGACTTTGATTTAGTGCCA  464

seq1  CCCTAGAGCAAAAGAATATTGAATAGCTAACCAAGTGACATATCTCTGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAGCAAAAGAATATTGAATAGCTAACCAAGTGACATATCTCTGAA  514

seq1  ATTGTGTCTTAACAATTGAGAAAGTTCAGTGAATTAAAATATTTAATGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCTTAACAATTGAGAAAGTTCAGTGAATTAAAATATTTAATGTT  564

seq1  TTTCATTTAAAATATTTTATCATTATAATTTATTAATTTATGTGTGGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTAAAATATTTTATCATTATAATTTATTAATTTATGTGTGGCAG  614

seq1  GGGGTCCCAGAACAAGATTACATAGTTCCCTTTCTGCTTTTTAGAGGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCCAGAACAAGATTACATAGTTCCCTTTCTGCTTTTTAGAGGGTT  664

seq1  CTAGAACTAAACCTCATGTTACCAGGCTTACACAGCAAGTCGTTTTACCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTAAACCTCATGTTACCAGGCTTACACAGCAAGTCGTTTTACCT  714

seq1  ACAGAGCCATCTGACCAACCTGTATTAAGTGGTTTAAAGAGGATTTTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCATCTGACCAACCTGTATTAAGTGGTTTAAAGAGGATTTTTTG  764

seq1  ACCTTCATTAAGGTTCTATTCTATACTAGGCCTCTGTAGTACTTTCTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTAAGGTTCTATTCTATACTAGGCCTCTGTAGTACTTTCTTTA  814

seq1  TTAAATACTCAGACAGAGTTAATACTGGAAATATTCTTTCAAAATTCTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACTCAGACAGAGTTAATACTGGAAATATTCTTTCAAAATTCTTC  864

seq1  AGTTCCAAGGAATAAATAATTTAAGCATGATGAAGCTCTTAGAGGGGAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAGGAATAAATAATTTAAGCATGATGAAGCTCTTAGAGGGGAGA  914

seq1  AAAGGCACCATCAGAAAGGTGTGTACTCTAACAATACAGGTATTACCCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACCATCAGAAAGGTGTGTACTCTAACAATACAGGTATTACCCCA  964

seq1  GTTATGGCTCAAAGTGATCTTTGTTCACAGATGATGACACTGAGACTGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGCTCAAAGTGATCTTTGTTCACAGATGATGACACTGAGACTGAT  1014

seq1  GTTTTTAATGCAACTAGTGACAGTTTAAGAAACCCAAGTTGAATCCTAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAATGCAACTAGTGACAGTTTAAGAAACCCAAGTTGAATCCTAGG  1064

seq1  AATCCTTTGAAATATAAGGTACATGAGACATGAGTATCTGCTTGATGTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTGAAATATAAGGTACATGAGACATGAGTATCTGCTTGATGTCT  1114

seq1  GCTTCTTACATTCATTTTTTTAACTTCACAGTCTAAACAAGCTTTTCCTG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTACATTCATTTTTTTAACTTCACAGTCTAAACAAGCTTTTCCTG  1164

seq1  GTAGAATCATGGATTTTTGCATTGTCAAAACTACAGAATTC  1239
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATCATGGATTTTTGCATTGTCAAAACTACAGAATTC  1205

seq1: chr6_45797193_45798354
seq2: B6Ng01-095H19.g_69_1201

seq1  GAATTCTTTAATGATCTAAGTTGTAACACAGTGAAGCAGACAGCAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATGATCTAAGTTGTAACACAGTGAAGCAGACAGCAAAGCA  50

seq1  AGGAAGGATCAAGTTGGGGGAAAGGCACCATAGGAGGAAAAGTAGGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGATCAAGTTGGGGGAAAGGCACCATAGGAGGAAAAGTAGGTTCT  100

seq1  CTGTAGGAACTTATTCAGAAATGAGGTATGGTGGAGAAGGAAAGTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAACTTATTCAGAAATGAGGTATGGTGGAGAAGGAAAGTTTTTG  150

seq1  GAAAGAGTTCTGAATGGGCTGAGCCCTCATAAGAGAAGAGGAAGGACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTTCTGAATGGGCTGAGCCCTCATAAGAGAAGAGGAAGGACTAC  200

seq1  GGTGTCTTAGGGTATACACTGGAATGTCACCTACAGATGAGCAAAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTAGGGTATACACTGGAATGTCACCTACAGATGAGCAAAAGGGT  250

seq1  TCAGTTTGAATTCAGACAGATGACTGTCACCTACCTTGCTACTTCATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGAATTCAGACAGATGACTGTCACCTACCTTGCTACTTCATTAA  300

seq1  AATGAGCAGAAGAGGGCCAGGAGAAGCATAAACCCAGCTAATAACATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAGAAGAGGGCCAGGAGAAGCATAAACCCAGCTAATAACATAGT  350

seq1  TCAGAGCCTTGTGAGGGAGTGCTGACCTCACAGAAAAAGATAAAGGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCTTGTGAGGGAGTGCTGACCTCACAGAAAAAGATAAAGGAGTA  400

seq1  CATTTTAGATAGATTTTGGGGAATAAATGACAAGATGCATTACATGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGATAGATTTTGGGGAATAAATGACAAGATGCATTACATGGTCA  450

seq1  TGACATCAAACTGATTTCTAAATGTTTTTATACTCTCAGACATGCCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAAACTGATTTCTAAATGTTTTTATACTCTCAGACATGCCTTGC  500

seq1  TGTCAACCTTGCTCTCTGATGCTTCTTTTTGTACTGTACAAGGATTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCTTGCTCTCTGATGCTTCTTTTTGTACTGTACAAGGATTGATA  550

seq1  TTGAAATGCATAAAATGGACAAAGCACTGAGAATAGGAAACTGAGTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGCATAAAATGGACAAAGCACTGAGAATAGGAAACTGAGTATTC  600

seq1  AGTCCATAATGAGATATCTTTTTCAATACCCTGTATTCCCAAGGCTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATAATGAGATATCTTTTTCAATACCCTGTATTCCCAAGGCTCAGG  650

seq1  GAATAATAGGGAAGGGGAGCAATCTTACATTAATAATAATTTCAAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAGGGAAGGGGAGCAATCTTACATTAATAATAATTTCAAGGCAA  700

seq1  GAAGTAACTATTTCCAATAAACTTTAAGTGGCAGCATATTTGAAGCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACTATTTCCAATAAACTTTAAGTGGCAGCATATTTGAAGCCAAC  750

seq1  TACCAGGTTAACAAATATAATCTTATTCATTCTTTAAAATTCAAATTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTTAACAAATATAATCTTATTCATTCTTTAAAATTCAAATTGTT  800

seq1  TCATACATATTTCAGTGGTGATAGTATATGCTGTCCATATGCTCCAGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATATTTCAGTGGTGATAGTATATGCTGTCCATATGCTCCAGTAC  850

seq1  CACATGTCAGTCCAAACAGAATCATATTCTAGAATTAAAATCAATATGGA  900
      ||||||||||||||||||| |||||||||||||||| ||||| |||||| 
seq2  CACATGTCAGTCCAAACAG-ATCATATTCTAGAATT-AAATC-ATATGGG  897

seq1  AAAATGCTTATTTTCCTAAAATGCAATTACAGCCTGAGAACAAAATGTAA  950
      |||||||||||||||||||||||||||||||| ||||||   |||||| |
seq2  AAAATGCTTATTTTCCTAAAATGCAATTACAGGCTGAGA--CAAATGT-A  944

seq1  ACACCTATTTTTCTATTTGTCTTGCATTTTAGTTAACATTAATGCCTCCC  1000
      ||||||||||||||| |||||| ||| ||||||  ||||  |||||||||
seq2  ACACCTATTTTTCTA-TTGTCTGGCA-TTTAGT--ACAT--ATGCCTCCC  988

seq1  ATATATTTAATTATATTTAAAACTATTAAATATAAGACAAAAAATTATTT  1050
      |||||||| |||||||||  ||||||  ||||||||||  ||||||||||
seq2  ATATATTT-ATTATATTT--AACTAT--AATATAAGAC--AAAATTATTT  1031

seq1  CTCACCTGTGTAGCAACTATGCCAGTAAGAATGACCACATACAGCAAGTG  1100
      |||| ||| ||||| ||||||||||| || |||||| | ||| || ||||
seq2  CTCA-CTGGGTAGC-ACTATGCCAGT-AGGATGACC-CTTACGGC-AGTG  1076

seq1  ATCTGAGCTTTTGATCTGTGG-AAACTATGGCTATGTCACCCTTTTATCA  1149
      |||||||| || ||||||||| ||||  | ||||||||||| ||||| ||
seq2  ATCTGAGC-TTGGATCTGTGGCAAAC--TTGCTATGTCACCTTTTTA-CA  1122

seq1  CGTTAAATTAGTG  1162
      ||||  |||||||
seq2  CGTT--ATTAGTG  1133