BAC Information

Click to search

BAC

Clone NameB6Ng01-095M05
Chromosome13 (Build37)6 (Build37)
Map Location 43,392,682 - 43,392,75221,681,466 - 21,682,648
singlet/doubletsingletsinglet
Overlap geneGfod1
Upstream geneEdn1, Hn1-ps4, Phactr1, Tbc1d7
Downstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095M05.bB6Ng01-095M05.g
ACCDH906614DH906615
length6461,168
definitionDH906614|Mus musculus domesticus DNA, BAC clone: B6Ng01-095M05, 5' end.DH906615|Mus musculus domesticus DNA, BAC clone: B6Ng01-095M05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,392,682 - 43,392,752)(21,681,466 - 21,682,648)
sequence
gaattctttgtttagctctgtaccccatttttaatagggttatttggttc
tttggagtctaacttcttgagttctttgtatatattgtatatgaatttat
attagttctttgtatatatcctctatcagatgtaggattggtaaagatct
ttttccaatctgttggttgctgttttgtcctattgacagtgtcctttgcc
ttacaggagctttgcaattttatgaggtcccatttgtcaattcttgatct
tacagcataagccatttgtgttctgttcaggaactttccccctgtgccca
tgtgttcaagattctcccccattttctcttctattagttacattgtatct
ggttttatgtgaaggtccttgatccacttgaacttgagctttgtacaagg
agataagaatggatcttctacatgctgaccaccagttggaccagtaccat
ttgttgaaaatgctcttttttccactggatgttttagctcctttgtcaaa
gattaaataaccataggtgtgtgggtttgtttctgggtcttcaattctat
tccattgtctctgtactaatactatgcagtttttatcactattgctcgct
ctctctctccctctctctctctctctctctctctctctctctctct
gaattcttatcataaacaagacactgagttaagcatcaagagaaataagg
attgagaaatgagaccaacagaacttaacagtgttattggaggttctttg
tcacataatgttatatccaattttttaagcttttatttcattttagtttt
aatttttatttttttaattttacagtttttgcatatgtatcacggagtct
gcttttgtgattttatgggattcctaacaagtatgactctgcatctgcat
ctctttcttgtgcattttcttggactcttgtcctcctgtttatttgtttt
gtctgatgttgatatattttattttatcctttagatgcctgctcattttc
tagtcagagacatcaaagggatagatctggttgggagaggaagtgaggag
aaactaggaggaaaaccctaatcagaatatattgtatgaaaaaggaatat
attttcaataaaagaaacaaaaaatagtagatcaagtttcctcaagaact
tatacagtgccaatgaatgaaggcactctgtgtcctcctataactcaaaa
gcccacactgcaagttccctgtctgccaggatcacgcactgctatgtttc
catctcccaaagggagttccctgaaaagcattatataaatatattgttct
tcaaattattctctcaaatcatcccagcacactattgaaatctctatgta
aacaatgattctctttctaccaagggccagaagtaaacacatgtatccct
acctactcagagaagtcaaatccaaaagagaggcagaactcattactggg
gtttgatcatcgggaaaaggaaaatgcctgtctctcaagattctccccac
atttcttatcacagtttcagagaatgtaaaagaagttatagatttatttt
tcttttctccgagggtaattatgatatccacaccacacctcaaattagtt
tgtgtatactcttatggaaatatctgagatgatagtacatttaaaagaaa
gttctaccaagaacctcatgaaaaagatggatacagatgggctgtgcagc
tcaaagcatggggaagagctgacgagacacatggcgtgagcaagcaaagc
ctaaagggagaatttggagaatgtctgactcacagatgggcatggtacaa
ctacagggtgatagaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_43392682_43392752
seq2: B6Ng01-095M05.b_633_686 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCAGCCATTCAAAGGG  50
      |||||||||||||||||||||||||||||||||                |
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA----------------G  34

seq1  AGGAGAGAGAGAGAGCGAGCA  71
      ||| |||||||||||||||||
seq2  AGG-GAGAGAGAGAGCGAGCA  54

seq1: chr6_21681466_21682648
seq2: B6Ng01-095M05.g_64_1231

seq1  GAATTCTTATCATAAACAAGACACTGAGTTAAGCATCAAGAGAAATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCATAAACAAGACACTGAGTTAAGCATCAAGAGAAATAAGG  50

seq1  ATTGAGAAATGAGACCAACAGAACTTAACAGTGTTATTGGAGGTTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAATGAGACCAACAGAACTTAACAGTGTTATTGGAGGTTCTTTG  100

seq1  TCACATAATGTTATATCCAATTTTTTAAGCTTTTATTTCATTTTAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAATGTTATATCCAATTTTTTAAGCTTTTATTTCATTTTAGTTTT  150

seq1  AATTTTTATTTTTTTAATTTTACAGTTTTTGCATATGTATCACGGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTTTTTAATTTTACAGTTTTTGCATATGTATCACGGAGTCT  200

seq1  GCTTTTGTGATTTTATGGGATTCCTAACAAGTATGACTCTGCATCTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTGATTTTATGGGATTCCTAACAAGTATGACTCTGCATCTGCAT  250

seq1  CTCTTTCTTGTGCATTTTCTTGGACTCTTGTCCTCCTGTTTATTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTGTGCATTTTCTTGGACTCTTGTCCTCCTGTTTATTTGTTTT  300

seq1  GTCTGATGTTGATATATTTTATTTTATCCTTTAGATGCCTGCTCATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGTTGATATATTTTATTTTATCCTTTAGATGCCTGCTCATTTTC  350

seq1  TAGTCAGAGACATCAAAGGGATAGATCTGGTTGGGAGAGGAAGTGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAGACATCAAAGGGATAGATCTGGTTGGGAGAGGAAGTGAGGAG  400

seq1  AAACTAGGAGGAAAACCCTAATCAGAATATATTGTATGAAAAAGGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGAGGAAAACCCTAATCAGAATATATTGTATGAAAAAGGAATAT  450

seq1  ATTTTCAATAAAAGAAACAAAAAATAGTAGATCAAGTTTCCTCAAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATAAAAGAAACAAAAAATAGTAGATCAAGTTTCCTCAAGAACT  500

seq1  TATACAGTGCCAATGAATGAAGGCACTCTGTGTCCTCCTATAACTCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTGCCAATGAATGAAGGCACTCTGTGTCCTCCTATAACTCAAAA  550

seq1  GCCCACACTGCAAGTTCCCTGTCTGCCAGGATCACGCACTGCTATGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACTGCAAGTTCCCTGTCTGCCAGGATCACGCACTGCTATGTTTC  600

seq1  CATCTCCCAAAGGGAGTTCCCTGAAAAGCATTATATAAATATATTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCAAAGGGAGTTCCCTGAAAAGCATTATATAAATATATTGTTCT  650

seq1  TCAAATTATTCTCTCAAATCATCCCAGCACACTATTGAAATCTCTATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATTCTCTCAAATCATCCCAGCACACTATTGAAATCTCTATGTA  700

seq1  AACAATGATTCTCTTTCTACCAAGGGCCAGAAGTAAACACATGTATCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGATTCTCTTTCTACCAAGGGCCAGAAGTAAACACATGTATCCCT  750

seq1  ACCTACTCAGAGAAGTCAAATCCAAAAGAGAGGCAGAACTCATTACTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTCAGAGAAGTCAAATCCAAAAGAGAGGCAGAACTCATTACTGGG  800

seq1  GTTTGATCATCGGGAAAAGGAAAATGCCTGTCTCTCAAGATTCTCCCCCA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTGATCATCGGGAAAAGGAAAATGCCTGTCTCTCAAGATTCT-CCCCA  849

seq1  CATTTCTTATCACAGTTTCAGAGAATGTAAAAAGAAGTTAATAGATTTAT  900
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  CATTTCTTATCACAGTTTCAGAGAATGT-AAAAGAAGTT-ATAGATTTAT  897

seq1  TTTTCTTTTCTCCGAGGGTAATTATGAATATCCACACCACACCTCAAATT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTCTTTTCTCCGAGGGTAATTATG-ATATCCACACCACACCTCAAATT  946

seq1  AGTTTGTGTAATTACTCTTATGGAAATATCTGAGATGATAGTACATTTAA  1000
      ||||||||||  |||||||||||||||||||||||||||||||||||| |
seq2  AGTTTGTGTA--TACTCTTATGGAAATATCTGAGATGATAGTACATTT-A  993

seq1  AAAGAAAGTTCTAACCAAGAA-CTCATGAAAAAGATGGATACAGATGGGC  1049
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  AAAGAAAGTTCT-ACCAAGAACCTCATGAAAAAGATGGATACAGATGGGC  1042

seq1  TGTGGCAGCTCAAAGCATGGGG-AGAGCTGACAGAG-CACATGGCGTGAG  1097
      ||| |||||||||||||||||| ||||||||| ||| |||||||||||||
seq2  TGT-GCAGCTCAAAGCATGGGGAAGAGCTGAC-GAGACACATGGCGTGAG  1090

seq1  CAAAGCCAAAGAGCCAGAGGGAGATTTGGAAGAATGCTGGACTACACAGT  1147
      |||   |||||  | | ||||||| || | ||||||   |||| ||||| 
seq2  CAA--GCAAAG-CCTAAAGGGAGAATTTGGAGAATGTCTGACT-CACAG-  1135

seq1  ATGGGGCATGGGCACCAACTACAAGGTGATAGAATA  1183
      || ||||||||    |||||||| ||||||||||||
seq2  AT-GGGCATGG--TACAACTACAGGGTGATAGAATA  1168