BAC Information

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BAC

Clone NameB6Ng01-096E02
Chromosome6 (Build37)
Map Location 82,119,780 - 82,231,126
singlet/doubletdoublet
Overlap geneEG622198
Upstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166
Downstream geneTacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096E02.bB6Ng01-096E02.g
ACCDH906967DH906968
length358290
definitionDH906967|Mus musculus domesticus DNA, BAC clone: B6Ng01-096E02, 5' end.DH906968|Mus musculus domesticus DNA, BAC clone: B6Ng01-096E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,230,769 - 82,231,126)(82,119,780 - 82,120,069)
sequence
agagtctggttgttaagatggaaatggacaattaagactataacctgggg
ctctgtagtcactagaacaagaattgctcagatttatgggttccttccaa
ccatccagtaattaggaggttgaaggagccattcctcaagcacttaggtt
gaatataacttaattctgtcaggtgattctccctgccaggatttatcagc
aagtgtccctgtgtgtcatgcattctagtgaaggagaaaataatgagagt
aaggtttgtgttttgttataaagataataatagaaacagaagtggttatt
tgtgtatgctggaggggaactccaagtttgcatgtgtgtgtgtgtgtgtg
tgtgtgtg
agtgatggggcctggagagatagctcagtgggtaagaacattttctgttc
aaagacttgagcccaaaagtcaggcatgaccacatatttgcctgccaacc
ctatgctggggttaggcaaggacagaggcaggaagatctctggccaccag
cctagctctaagcttaatgggagactttatctccaggaaataaggtggag
cgtgactgagcaggatgcttgatagccccaggcttccacacacactcaca
tgggcacgtgtatgcactcccatgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_82230769_82231126
seq2: B6Ng01-096E02.b_50_407 (reverse)

seq1  CACACACACACACACACACACACACATGCAAACTTGGAGTTCCCCTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATGCAAACTTGGAGTTCCCCTCCAG  50

seq1  CATACACAAATAACCACTTCTGTTTCTATTATTATCTTTATAACAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAAATAACCACTTCTGTTTCTATTATTATCTTTATAACAAAACA  100

seq1  CAAACCTTACTCTCATTATTTTCTCCTTCACTAGAATGCATGACACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTACTCTCATTATTTTCTCCTTCACTAGAATGCATGACACACAG  150

seq1  GGACACTTGCTGATAAATCCTGGCAGGGAGAATCACCTGACAGAATTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTGCTGATAAATCCTGGCAGGGAGAATCACCTGACAGAATTAAG  200

seq1  TTATATTCAACCTAAGTGCTTGAGGAATGGCTCCTTCAACCTCCTAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCAACCTAAGTGCTTGAGGAATGGCTCCTTCAACCTCCTAATTA  250

seq1  CTGGATGGTTGGAAGGAACCCATAAATCTGAGCAATTCTTGTTCTAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGTTGGAAGGAACCCATAAATCTGAGCAATTCTTGTTCTAGTGA  300

seq1  CTACAGAGCCCCAGGTTATAGTCTTAATTGTCCATTTCCATCTTAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGCCCCAGGTTATAGTCTTAATTGTCCATTTCCATCTTAACAAC  350

seq1  CAGACTCT  358
      ||||||||
seq2  CAGACTCT  358

seq1: chr6_82119780_82120069
seq2: B6Ng01-096E02.g_72_361

seq1  AGTGATGGGGCCTGGAGAGATAGCTCAGTGGGTAAGAACATTTTCTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGGGCCTGGAGAGATAGCTCAGTGGGTAAGAACATTTTCTGTTC  50

seq1  AAAGACTTGAGCCCAAAAGTCAGGCATGACCACATATTTGCCTGCCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTGAGCCCAAAAGTCAGGCATGACCACATATTTGCCTGCCAACC  100

seq1  CTATGCTGGGGTTAGGCAAGGACAGAGGCAGGAAGATCTCTGGCCACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGGGGTTAGGCAAGGACAGAGGCAGGAAGATCTCTGGCCACCAG  150

seq1  CCTAGCTCTAAGCTTAATGGGAGACTTTATCTCCAGGAAATAAGGTGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCTAAGCTTAATGGGAGACTTTATCTCCAGGAAATAAGGTGGAG  200

seq1  CGTGACTGAGCAGGATGCTTGATAGCCCCAGGCTTCCACACACACTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTGAGCAGGATGCTTGATAGCCCCAGGCTTCCACACACACTCACA  250

seq1  TGGGCACGTGTATGCACTCCCATGTGTGTGTGTGTGTGTG  290
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACGTGTATGCACTCCCATGTGTGTGTGTGTGTGTG  290