BAC Information

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BAC

Clone NameB6Ng01-096F02
Chromosome6 (Build37)
Map Location 29,357,248 - 29,466,721
singlet/doubletdoublet
Overlap gene4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2
Upstream geneGcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw
Downstream geneIrf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096F02.bB6Ng01-096F02.g
ACCDH907011DH907012
length1,1551,080
definitionDH907011|Mus musculus domesticus DNA, BAC clone: B6Ng01-096F02, 5' end.DH907012|Mus musculus domesticus DNA, BAC clone: B6Ng01-096F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,465,563 - 29,466,721)(29,357,248 - 29,358,326)
sequence
gaattctatgaacctcagtaaaggggaagctctgctgggataaccctgtg
ggtgtaaggccctagatggacagctcaggggttctttctggtaggtgttc
cagggaaggatagcaggcagtagtggcggtcaccagggaaccctgagagc
agccaagtcatatgtcaacacacatgttcctaagggcattggcagtgtcc
tgactcctacagtccagggtgattccatgagtatgaggccctccccatct
cgtcaaagctacagctcctgcatcactactgtgagcatctcggtgtctca
gttctatttcctggggacctttggcccaaggctgtccttccttaggcata
tcctgtagacagcctgcctagtggggacaagaaggcgatacagtgcactg
cccttgggaaaccattgagagaataactaatgtgcttgggtcttaaatgt
gacccaatgcaggtatgtttaaggcttggtctccaggtaatggtgtgaag
aggtgccagaaacttcaagggcaaggcctgagttggaggaagtattaatt
gatggtgtcctctaatgagcgtatcattaattgctggtatcttctaatga
gcgtatccagaccacagtcccttccactctccagcatggtggtgcacggc
tatgatcctgcactcgggaggcagaggcatggcttgaggcaagagtctag
ccctgtctccacagtgaggtgagcccaccgagaaagctaaaacgtcccgt
tagattggggaaaggacttggttttcactgcttcctgtcagcactggact
agaagtctcagttaatacagcaagacgaggaaaagacagacgacattcac
aaagtgaggagaagatagaacagtccccgcctgcagatgatgcaactgtc
tatgtattaaatgtgaaactcttttttaaaaactagaattataactgctg
atgaggtaggatagaaaggccaggaaaatcatgtggaaatgagaaggggc
cagagatccccaccccggatccagctgaagtccttgccagcagcagggga
aaattccaccacattagcagctactggagactgttctcccctccccagcc
acgagcctgccattttctaggatcttaccaaaacctcccaatttacagaa
agatg
gaattctccaagtgggcttcggactggcttcttttgttttgttagtctaa
aactatactaaaatcaaaggtttatttaagcaggagatcttataaaaggc
tatttcaaggattaaatgaaggtcaaaaccatcaagtcttcatacacagt
tctcattacagtttcttacttcccactgtaatcttcaggaatctgagagt
atttatttatttatttatatttatttatttaagacaggtgtccctacata
gccctggctgtcctagaatttgttatgtagaccaggctggccttaaactc
acagaggtctctgcctctgcctcccaaatgctgtgatttaagcttgtgcc
accatgcctggacctgtctaagaacttgtggttggattaaagaagaaaca
ttaaaactggagttcaggggtgttgaatcctcttacaagtaaaataccgt
atattgtaattaaggccagtttgtgcatcttaaatgttagtagaactagt
gttctaagtgctgtgattctttgtctgtgaatgagtgtgtgctgtatgtg
tgttggagtaggggacgcactgacatctacacatactgtagaagccaggg
gttgatatgggcatctgcctctatcagtgtctgacataccttttctggag
acaggatctgttactgaacttgaagtttaccaccttgactagactgactc
actagggatcccccagagtctaccagtctccacaccctcagtgctggggt
tataggtacaagctaccatccctggctttttaatggagacgttgggaatc
tgaacttaggtcctcatgttatacaaacactttacctactcagccacttc
cccagccccagtaatattattcttttcttgaaatctttatttgggtttta
tttatatgtatgtgtatctgtgtgtctgccatgtttgtgtaactgctgag
tccagcagtgggcgctgagctgaagttataggtggttataagccaggtaa
catgggttgctggaaactgaatgtcgctctttgtagaaaagcatcaactt
cacttaaagactgagcatctgctgacctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29465563_29466721
seq2: B6Ng01-096F02.b_43_1197 (reverse)

seq1  CATCTTTTCCTTGTAAA-TGGGAGGTTTTGGTAAGATTCCTAGAAAATGG  49
      |||||||    |||||| |||||||||||||||||| |||||||||||||
seq2  CATCTTT---CTGTAAATTGGGAGGTTTTGGTAAGA-TCCTAGAAAATGG  46

seq1  CAGGCTCGTGGCTGGGGA-GGGAG-ACAGTCTCAAGTAGCTGCTAATTGT  97
      |||||||||||||||||| ||||| |||||||| |||||||||||| |||
seq2  CAGGCTCGTGGCTGGGGAGGGGAGAACAGTCTCCAGTAGCTGCTAA-TGT  95

seq1  GTTGGAATTTTCCCCTGCTGCTGGCAAAGACTTCAGCTGGATCCGGGGTG  147
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTGGAATTTTCCCCTGCTGCTGGCAAGGACTTCAGCTGGATCCGGGGTG  145

seq1  GGGATCTTCTGGCCCCTTCTCATTTCCACATGATTTTCCTGGCCTTTCTA  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATC-TCTGGCCCCTTCTCATTTCCACATGATTTTCCTGGCCTTTCTA  194

seq1  TCCTACCTCATCAGCAGTTATAATTCTAGTTTTTTAAAAAAGAGTTTCAC  247
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTACCTCATCAGCAGTTATAATTCTAG-TTTTTAAAAAAGAGTTTCAC  243

seq1  ATTTAATACATAGACAGTTGCATCATCTGCAGGCGGGGACTGTTCTATCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATACATAGACAGTTGCATCATCTGCAGGCGGGGACTGTTCTATCT  293

seq1  TCTCCTCACTTTGTGAATGTCGTCTGTCTTTTCCTCGTCTTGCTGTATTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCACTTTGTGAATGTCGTCTGTCTTTTCCTCGTCTTGCTGTATTA  343

seq1  ACTGAGACTTCTAGTCCAGTGCTGACAGGAAGCAGTGAAAACCAAGTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACTTCTAGTCCAGTGCTGACAGGAAGCAGTGAAAACCAAGTCCT  393

seq1  TTCCCCAATCTAACGGGACGTTTTAGCTTTCTCGGTGGGCTCACCTCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAATCTAACGGGACGTTTTAGCTTTCTCGGTGGGCTCACCTCACT  443

seq1  GTGGAGACAGGGCTAGACTCTTGCCTCAAGCCATGCCTCTGCCTCCCGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACAGGGCTAGACTCTTGCCTCAAGCCATGCCTCTGCCTCCCGAG  493

seq1  TGCAGGATCATAGCCGTGCACCACCATGCTGGAGAGTGGAAGGGACTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATCATAGCCGTGCACCACCATGCTGGAGAGTGGAAGGGACTGTG  543

seq1  GTCTGGATACGCTCATTAGAAGATACCAGCAATTAATGATACGCTCATTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATACGCTCATTAGAAGATACCAGCAATTAATGATACGCTCATTA  593

seq1  GAGGACACCATCAATTAATACTTCCTCCAACTCAGGCCTTGCCCTTGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACCATCAATTAATACTTCCTCCAACTCAGGCCTTGCCCTTGAAG  643

seq1  TTTCTGGCACCTCTTCACACCATTACCTGGAGACCAAGCCTTAAACATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCACCTCTTCACACCATTACCTGGAGACCAAGCCTTAAACATAC  693

seq1  CTGCATTGGGTCACATTTAAGACCCAAGCACATTAGTTATTCTCTCAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGGGTCACATTTAAGACCCAAGCACATTAGTTATTCTCTCAATG  743

seq1  GTTTCCCAAGGGCAGTGCACTGTATCGCCTTCTTGTCCCCACTAGGCAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAAGGGCAGTGCACTGTATCGCCTTCTTGTCCCCACTAGGCAGG  793

seq1  CTGTCTACAGGATATGCCTAAGGAAGGACAGCCTTGGGCCAAAGGTCCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACAGGATATGCCTAAGGAAGGACAGCCTTGGGCCAAAGGTCCCC  843

seq1  AGGAAATAGAACTGAGACACCGAGATGCTCACAGTAGTGATGCAGGAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAGAACTGAGACACCGAGATGCTCACAGTAGTGATGCAGGAGCT  893

seq1  GTAGCTTTGACGAGATGGGGAGGGCCTCATACTCATGGAATCACCCTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTGACGAGATGGGGAGGGCCTCATACTCATGGAATCACCCTGGA  943

seq1  CTGTAGGAGTCAGGACACTGCCAATGCCCTTAGGAACATGTGTGTTGACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAGTCAGGACACTGCCAATGCCCTTAGGAACATGTGTGTTGACA  993

seq1  TATGACTTGGCTGCTCTCAGGGTTCCCTGGTGACCGCCACTACTGCCTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTGGCTGCTCTCAGGGTTCCCTGGTGACCGCCACTACTGCCTGC  1043

seq1  TATCCTTCCCTGGAACACCTACCAGAAAGAACCCCTGAGCTGTCCATCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCCCTGGAACACCTACCAGAAAGAACCCCTGAGCTGTCCATCTA  1093

seq1  GGGCCTTACACCCACAGGGTTATCCCAGCAGAGCTTCCCCTTTACTGAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTACACCCACAGGGTTATCCCAGCAGAGCTTCCCCTTTACTGAGG  1143

seq1  TTCATAGAATTC  1159
      ||||||||||||
seq2  TTCATAGAATTC  1155

seq1: chr6_29357248_29358326
seq2: B6Ng01-096F02.g_67_1146

seq1  GAATTCTCCAAGTGGGCTTCGGACTGGCTTCTTTTGTTTTGTTAGTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAGTGGGCTTCGGACTGGCTTCTTTTGTTTTGTTAGTCTAA  50

seq1  AACTATACTAAAATCAAAGGTTTATTTAAGCAGGAGATCTTATAAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACTAAAATCAAAGGTTTATTTAAGCAGGAGATCTTATAAAAGGC  100

seq1  TATTTCAAGGATTAAATGAAGGTCAAAACCATCAAGTCTTCATACACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAGGATTAAATGAAGGTCAAAACCATCAAGTCTTCATACACAGT  150

seq1  TCTCATTACAGTTTCTTACTTCCCACTGTAATCTTCAGGAATCTGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTACAGTTTCTTACTTCCCACTGTAATCTTCAGGAATCTGAGAGT  200

seq1  ATTTATTTATTTATTTATATTTATTTATTTAAGACAGGTGTCCCTACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATATTTATTTATTTAAGACAGGTGTCCCTACATA  250

seq1  GCCCTGGCTGTCCTAGAATTTGTTATGTAGACCAGGCTGGCCTTAAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTAGAATTTGTTATGTAGACCAGGCTGGCCTTAAACTC  300

seq1  ACAGAGGTCTCTGCCTCTGCCTCCCAAATGCTGTGATTTAAGCTTGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTCTCTGCCTCTGCCTCCCAAATGCTGTGATTTAAGCTTGTGCC  350

seq1  ACCATGCCTGGACCTGTCTAAGAACTTGTGGTTGGATTAAAGAAGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTGGACCTGTCTAAGAACTTGTGGTTGGATTAAAGAAGAAACA  400

seq1  TTAAAACTGGAGTTCAGGGGTGTTGAATCCTCTTACAAGTAAAATACCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTGGAGTTCAGGGGTGTTGAATCCTCTTACAAGTAAAATACCGT  450

seq1  ATATTGTAATTAAGGCCAGTTTGTGCATCTTAAATGTTAGTAGAACTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAATTAAGGCCAGTTTGTGCATCTTAAATGTTAGTAGAACTAGT  500

seq1  GTTCTAAGTGCTGTGATTCTTTGTCTGTGAATGAGTGTGTGCTGTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAGTGCTGTGATTCTTTGTCTGTGAATGAGTGTGTGCTGTATGTG  550

seq1  TGTTGGAGTAGGGGACGCACTGACATCTACACATACTGTAGAAGCCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGTAGGGGACGCACTGACATCTACACATACTGTAGAAGCCAGGG  600

seq1  GTTGATATGGGCATCTGCCTCTATCAGTGTCTGACATACCTTTTCTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATGGGCATCTGCCTCTATCAGTGTCTGACATACCTTTTCTGGAG  650

seq1  ACAGGATCTGTTACTGAACTTGAAGTTTACCACCTTGACTAGACTGACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCTGTTACTGAACTTGAAGTTTACCACCTTGACTAGACTGACTC  700

seq1  ACTAGGGATCCCCCAGAGTCTACCAGTCTCCACACCCTCAGTGCTGGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGATCCCCCAGAGTCTACCAGTCTCCACACCCTCAGTGCTGGGGT  750

seq1  TATAGGTACAAGCTACCATCCCTGGCTTTTTAATGGAGACGTTGGGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTACAAGCTACCATCCCTGGCTTTTTAATGGAGACGTTGGGAATC  800

seq1  TGAACTTAGGTCCTCATGTTTATACAAACACTTTACCTACTCAGCCACTT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAACTTAGGTCCTCATG-TTATACAAACACTTTACCTACTCAGCCACTT  849

seq1  CCCCAGCCCCAGTAATATTATTCTTTTCTTGAAATCTTTATTT-GGTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCCAGCCCCAGTAATATTATTCTTTTCTTGAAATCTTTATTTGGGTTTT  899

seq1  ATTTATATGTATGTGTATCTGTGTGTCTGCCATGTTTGTGTAACTGCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGTATGTGTATCTGTGTGTCTGCCATGTTTGTGTAACTGCTGA  949

seq1  GTCCAGCAGTGGGCGCTGAGCTGAAGTTATAGGTGGTTATAAGCCAGGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCAGTGGGCGCTGAGCTGAAGTTATAGGTGGTTATAAGCCAGGTA  999

seq1  ACATGGG-TGCTGGAAACTG-ATGTCGCTC-TTGTAGAAAAGCATCAAC-  1045
      ||||||| |||||||||||| ||||||||| |||||||||||||||||| 
seq2  ACATGGGTTGCTGGAAACTGAATGTCGCTCTTTGTAGAAAAGCATCAACT  1049

seq1  TCACTTAAAGACTGAGCCATCTCTCTGACTCTCT  1079
      |||||||||||||||| |||||  ||||| ||||
seq2  TCACTTAAAGACTGAG-CATCT-GCTGAC-CTCT  1080