BAC Information

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BAC

Clone NameB6Ng01-096I14
Chromosome6 (Build37)
Map Location 6,267,119 - 6,359,772
singlet/doubletdoublet
Overlap geneEG667468, LOC667471
Upstream geneAsb4, Pdk4, Dync1i1, Slc25a13, EG667462
Downstream geneLOC100040096, Shfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096I14.bB6Ng01-096I14.g
ACCDH907161DH907162
length7071,202
definitionDH907161|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I14, 5' end.DH907162|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,359,066 - 6,359,772)(6,267,119 - 6,268,344)
sequence
gaattctgtcaaatcagagactttcacattcagcagagcatcggcagaag
acatcatgatggagttttcccactgagaaagtctccatcaggagtttctg
gcttcccagttccctctctaggcactcttataccatgggataaagagtag
taacatctattctaactgctcacaagatgtggtactgctaaataccttta
gttgattactttttcccctcttcagagagctgttggagtaggtgtggcct
ttttggagtaggtgtgtcactgtggtctttaagaccctcatcctagcttc
ctggaagggagtattctgctagcagttttcagatgaaaatatagaactct
cagctcttcctgtaccatgcctgcctagatgctacaatgctccctccttt
atgataatggactgaacctctgaacctgtaagccagccccaattaaatgt
cctttataagacttgccttggtcatggtgtctgttcatagcagtaaaacc
ctaactaagacaccatccaaatgttgtaaattgtaagcattttatgtcat
tattgaaatactaactttcccagattatataattacacagaaagttattc
aattaccccaaacacctagaaaatttagttgtagggatattttggcatgt
gtatatgagtgtacacatgtctgttgataaagatacatgtgtgtgtgtgt
gtgtgtg

gaattcactgtcagtcttttcctggaaaaatctcctcagagacacatgaa
agctttctattaagaagtagacatgaatctgatctgtttacgaagaatcc
caacatggaatttaacatggaatttataatttatttagtttttaactatt
ttcaataatgtacattgttgtatatatatatacttaacatctgtatatat
catttaaaagagtagccatatgtatagagtttgagcaggcatctgacaaa
ttctccacacatatataactttgtaaaaactaatagttttagcaaagtgt
gctttgaaacttttggcaaacatatcagaacaccgtgtttggtttagttt
gacttaatagctatgatttttaaaattgttcaactgttcttttttagtac
tgagtttaaaagacaaaaatttatatcaagcttctctgaaaattcttttc
tgtgtatcatacataattaagcactcatgtaagtttttgaagcttcaaaa
ttggtcactacggacggtctatgattttgttgtattcgagcctatttttt
tctcatcaaagatgatttcaactatacagctcaaactgtcagtaaaaaaa
aggatcccagctgtcttagatacgagagtcctagtggagacttgatagac
tgttcataaaaactcattgtaaaggtctggatatttgctgacccttctat
cagtgggaaataagatctcaccaacaggggcgctggctttccattagtag
aggaagagcggagcctgtcgttctctacccaactgagctggcattactgc
tcaagtctacacaatgtaagaatctctgggcaaagagttgagaattgggt
tgcttagttcccctcccgctgacagcttgatgaaacttccttccgggaaa
tttactctattctacctaattatgtaggtcgaggaaatggtgacatagca
gggcaccatttcccgagtgtcagacggtgcccagtcatgtgtatagtact
gcatgatgcgtactgccatccttgcagggaagagtcctattcttgaaagc
catgagttcgtacaaagtctcatcagtgtagaagacctcaaccctgaata
tcgcctgcccaacatgacatggaatggtgattcgatgcctgaattaacga
tcaagccatacaccagaggaagcagtcagttcacctgggttgttggagga
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6359066_6359772
seq2: B6Ng01-096I14.b_49_755 (reverse)

seq1  CACACACACACACACACACATGTATCTTTATCAACAGACATGTGTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATGTATCTTTATCAACAGACATGTGTACACT  50

seq1  CATATACACATGCCAAAATATCCCTACAACTAAATTTTCTAGGTGTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACACATGCCAAAATATCCCTACAACTAAATTTTCTAGGTGTTTGG  100

seq1  GGTAATTGAATAACTTTCTGTGTAATTATATAATCTGGGAAAGTTAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTGAATAACTTTCTGTGTAATTATATAATCTGGGAAAGTTAGTAT  150

seq1  TTCAATAATGACATAAAATGCTTACAATTTACAACATTTGGATGGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAATGACATAAAATGCTTACAATTTACAACATTTGGATGGTGTCT  200

seq1  TAGTTAGGGTTTTACTGCTATGAACAGACACCATGACCAAGGCAAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGGGTTTTACTGCTATGAACAGACACCATGACCAAGGCAAGTCTT  250

seq1  ATAAAGGACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCA  300

seq1  TTATCATAAAGGAGGGAGCATTGTAGCATCTAGGCAGGCATGGTACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATAAAGGAGGGAGCATTGTAGCATCTAGGCAGGCATGGTACAGGA  350

seq1  AGAGCTGAGAGTTCTATATTTTCATCTGAAAACTGCTAGCAGAATACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGAGTTCTATATTTTCATCTGAAAACTGCTAGCAGAATACTCC  400

seq1  CTTCCAGGAAGCTAGGATGAGGGTCTTAAAGACCACAGTGACACACCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAAGCTAGGATGAGGGTCTTAAAGACCACAGTGACACACCTAC  450

seq1  TCCAAAAAGGCCACACCTACTCCAACAGCTCTCTGAAGAGGGGAAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAGGCCACACCTACTCCAACAGCTCTCTGAAGAGGGGAAAAAGT  500

seq1  AATCAACTAAAGGTATTTAGCAGTACCACATCTTGTGAGCAGTTAGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTAAAGGTATTTAGCAGTACCACATCTTGTGAGCAGTTAGAATA  550

seq1  GATGTTACTACTCTTTATCCCATGGTATAAGAGTGCCTAGAGAGGGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTACTACTCTTTATCCCATGGTATAAGAGTGCCTAGAGAGGGAACT  600

seq1  GGGAAGCCAGAAACTCCTGATGGAGACTTTCTCAGTGGGAAAACTCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCAGAAACTCCTGATGGAGACTTTCTCAGTGGGAAAACTCCATC  650

seq1  ATGATGTCTTCTGCCGATGCTCTGCTGAATGTGAAAGTCTCTGATTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCTTCTGCCGATGCTCTGCTGAATGTGAAAGTCTCTGATTTGAC  700

seq1  AGAATTC  707
      |||||||
seq2  AGAATTC  707


seq1: chr6_6267119_6268344
seq2: B6Ng01-096I14.g_67_1268

seq1  GAATTCACTGTCAGTCTTTTCCTGGAAAAATCTCCTCAGAGACACATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCAGTCTTTTCCTGGAAAAATCTCCTCAGAGACACATGAA  50

seq1  AGCTTTCTATTAAGAAGTAGACATGAATCTGATCTGTTTACGAAGAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTATTAAGAAGTAGACATGAATCTGATCTGTTTACGAAGAATCC  100

seq1  CAACATGGAATTTAACATGGAATTTATAATTTATTTAGTTTTTAACTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGAATTTAACATGGAATTTATAATTTATTTAGTTTTTAACTATT  150

seq1  TTCAATAATGTACATTGTTGTATATATATATACTTAACATCTGTATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAATGTACATTGTTGTATATATATATACTTAACATCTGTATATAT  200

seq1  CATTTAAAAGAGTAGCCATATGTATAGAGTTTGAGCAGGCATCTGACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAAGAGTAGCCATATGTATAGAGTTTGAGCAGGCATCTGACAAA  250

seq1  TTCTCCACACATATATAACTTTGTAAAAACTAATAGTTTTAGCAAAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACACATATATAACTTTGTAAAAACTAATAGTTTTAGCAAAGTGT  300

seq1  GCTTTGAAACTTTTGGCAAACATATCAGAACACCGTGTTTGGTTTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAACTTTTGGCAAACATATCAGAACACCGTGTTTGGTTTAGTTT  350

seq1  GACTTAATAGCTATGATTTTTAAAATTGTTCAACTGTTCTTTTTTAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATAGCTATGATTTTTAAAATTGTTCAACTGTTCTTTTTTAGTAC  400

seq1  TGAGTTTAAAAGACAAAAATTTATATCAAGCTTCTCTGAAAATTCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTAAAAGACAAAAATTTATATCAAGCTTCTCTGAAAATTCTTTTC  450

seq1  TGTGTATCATACATAATTAAGCACTCATGTAAGTTTTTGAAGCTTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCATACATAATTAAGCACTCATGTAAGTTTTTGAAGCTTCAAAA  500

seq1  TTGGTCACTACGGACGGTCTATGATTTTGTTGTATTCGAGCCTATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCACTACGGACGGTCTATGATTTTGTTGTATTCGAGCCTATTTTTT  550

seq1  TCTCATCAAAGATGATTTCAACTATACAGCTCAAACTGTCAGTAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCAAAGATGATTTCAACTATACAGCTCAAACTGTCAGTAAAAAAA  600

seq1  AGGATCCCAGCTGTCTTAGATACGAGAGTCCTAGTGGAGACTTGATAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCCAGCTGTCTTAGATACGAGAGTCCTAGTGGAGACTTGATAGAC  650

seq1  TGTTCATAAAAACTCATTGTAAAGGTCTGGATATTTGCTGACCCTTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAAAAACTCATTGTAAAGGTCTGGATATTTGCTGACCCTTCTAT  700

seq1  CAGTGGGAAATAAGATCTCACCAACAGGGGCGCTGGCTTTCCATTAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAATAAGATCTCACCAACAGGGGCGCTGGCTTTCCATTAGTAG  750

seq1  AGGAAGAGCGGAGCCTGTCGTTCTCTACCCAACTGAGCTGGCATTACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGCGGAGCCTGTCGTTCTCTACCCAACTGAGCTGGCATTACTGC  800

seq1  TCAAGTCTACACAATGTAAGAATCTCTGGGCAAAGAGTTGAGAATTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTACACAATGTAAGAATCTCTGGGCAAAGAGTTGAGAATTGGGT  850

seq1  TGCTTAGTTCCCCTCCCGCTGACAGCTTGATGAAACTTCCTTCCGGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTTCCCCTCCCGCTGACAGCTTGATGAAACTTCCTTCCGGGAAA  900

seq1  TTTACTCTATTCTACCTAATTATGTAGGTCGAGGAAATGGTGACATAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTATTCTACCTAATTATGTAGGTCGAGGAAATGGTGACATAGCA  950

seq1  GGGGCACCATTTCCCGAGTGTCAGACGGTGCCCAGTCATGTGTATAGTAC  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGGCACCATTTCCCGAGTGTCAGACGGTGCCCAGTCATGTGTATAGTAC  999

seq1  TGCATGGAATGCGTACTGCCATCCTTGCAAGGGAAGAGTCCTATTCTTGA  1050
      ||||||  |||||||||||||||||||| |||||||||||||||||||| 
seq2  TGCATG--ATGCGTACTGCCATCCTTGC-AGGGAAGAGTCCTATTCTTG-  1045

seq1  AAAGCCATGAGTTCGTTACAAAGTCTCATCAGTGGTAGAAGACTCAAACC  1100
      ||||||||||||||| ||||||||||||||||| |||||||||   ||||
seq2  AAAGCCATGAGTTCG-TACAAAGTCTCATCAGT-GTAGAAGACCTCAACC  1093

seq1  CTGGAATATCCGGCTGCACAACCATGACCATGG-ATGGTGATTACGATGC  1149
      || |||||| || |||| ||| ||||| ||||| ||||||||| ||||||
seq2  CT-GAATAT-CGCCTGCCCAA-CATGA-CATGGAATGGTGATT-CGATGC  1138

seq1  ATAGAATTTAGACGATCAAAGCAAATAACACCAGAGAGAAGAGAAGGGTC  1199
       | |||||   ||||||||  ||    ||||||||| ||||      |||
seq2  CT-GAATT--AACGATCAAGCCA---TACACCAGAG-GAAG----CAGTC  1177

seq1  AGTTCAACCTGGGTTGTTGGGAGGAAA  1226
      ||||| |||||||||||| ||||||||
seq2  AGTTC-ACCTGGGTTGTT-GGAGGAAA  1202


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