BAC Information

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BAC

Clone NameB6Ng01-096M19
Chromosome6 (Build37)11 (Build37)
Map Location 96,680,227 - 96,681,372103,371,977 - 103,372,168
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096M19.bB6Ng01-096M19.g
ACCDH907345DH907346
length1,152526
definitionDH907345|Mus musculus domesticus DNA, BAC clone: B6Ng01-096M19, 5' end.DH907346|Mus musculus domesticus DNA, BAC clone: B6Ng01-096M19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,680,227 - 96,681,372)(103,371,977 - 103,372,168)
sequence
gaattcttacacatccgtgaagtcttggcagagtgaggatacagaaatat
gcacagactccagtagaacacagatgtgctatgtgtgggctgcagggacc
tgttctgaaggcaggaactccctcaggtactctcattatcagttcttaat
ttaggaagagaatctgtctatctctggtgagcaaaaacagctccagaaga
gaaaaggacaggccagactttctcaatgcaggttataagagatgaaattg
gattcttgagcccatgtgtaatgaaatacaaagttggtgctttccattaa
aggtctgtcactttggcatgaggggcttggattttcaaaaggaattttat
atagaaaatgaaatacaggtgagccactgaattcagagttctcttaagat
gcaatgctttgaagagcagtggttttgttgtttgggcctatgaggaatta
acttcagtatataaaataagatttactttacccattgagacagctctgcc
tctctagtttttatgtagacttaaataagacatgtgactgaatacaaaat
accacattttccccaaaacttaccactaagaaagtatggtcatcttgtgt
acaactttcacagtttttcaatttcttaactttgggggcgggatgtaggt
ggcaagataggatttggggaaattttagcttgaatgttgctaagccaatt
ctagatgagaatagttagacatgtagctgagaaagtggtcccttgagcaa
agggcttgctgtgcaacccacaaagacaggagttcagctctccagcactc
atggaaatgctagatgagtgtggcatgtgagattctgagacaagagagtc
cctggaacaagttagctaactagaatagccaactgggaagtctgggttta
aatgagcagccatgcctcaatatatgagatagagattagtcaaagaagac
actcaacaccaacttcctagatatatacatacaagcaaccccacacacac
aggcatgcatgtccaccatggacaccaaactataccacattgtacatggg
ggaagaacataatttaaggcacagccacttgttttaaacaaattttttct
ttgaatttcaaaaagaatgggcatttatttccagaaaaaattactggtat
ga
gaattcaaggaaaaacattttccaggcatagttgcacatgtctactcaca
gagacaacataagcaagagctacacaaactcaagccagataaaatcccaa
catggaggaatggaggtgggcatagagtttgacccctagctggaggtatt
agcagttgcttactgagtagggggtagacgtcaatggtttgactcctgat
atatttactgcaccctggtatatatatatatatatatatatatatatata
tatatatatgcacacacatatatatacatatatacacacacatatatata
tacatatatacacatatatgtatatacacacatatatatacatatatata
taatttatacacatacacacatatatacatatatatacacatatatatac
acacatatatatacacacatatatatacatatatatatataatttataca
cacacatacatatacatgcacacacacatatgtgtgtgtgtgtatatata
tatatatatatatacatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96680227_96681372
seq2: B6Ng01-096M19.b_48_1199

seq1  GAATTCTTACACATCCGTGAAGTCTTGGCAGAGTGAGGATACAGAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACACATCCGTGAAGTCTTGGCAGAGTGAGGATACAGAAATAT  50

seq1  GCACAGACTCCAGTAGAACACAGATGTGCTATGTGTGGGCTGCAGGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTCCAGTAGAACACAGATGTGCTATGTGTGGGCTGCAGGGACC  100

seq1  TGTTCTGAAGGCAGGAACTCCCTCAGGTACTCTCATTATCAGTTCTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGAAGGCAGGAACTCCCTCAGGTACTCTCATTATCAGTTCTTAAT  150

seq1  TTAGGAAGAGAATCTGTCTATCTCTGGTGAGCAAAAACAGCTCCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGAGAATCTGTCTATCTCTGGTGAGCAAAAACAGCTCCAGAAGA  200

seq1  GAAAAGGACAGGCCAGACTTTCTCAATGCAGGTTATAAGAGATGAAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGACAGGCCAGACTTTCTCAATGCAGGTTATAAGAGATGAAATTG  250

seq1  GATTCTTGAGCCCATGTGTAATGAAATACAAAGTTGGTGCTTTCCATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTGAGCCCATGTGTAATGAAATACAAAGTTGGTGCTTTCCATTAA  300

seq1  AGGTCTGTCACTTTGGCATGAGGGGCTTGGATTTTCAAAAGGAATTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTCACTTTGGCATGAGGGGCTTGGATTTTCAAAAGGAATTTTAT  350

seq1  ATAGAAAATGAAATACAGGTGAGCCACTGAATTCAGAGTTCTCTTAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATGAAATACAGGTGAGCCACTGAATTCAGAGTTCTCTTAAGAT  400

seq1  GCAATGCTTTGAAGAGCAGTGGTTTTGTTGTTTGGGCCTATGAGGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCTTTGAAGAGCAGTGGTTTTGTTGTTTGGGCCTATGAGGAATTA  450

seq1  ACTTCAGTATATAAAATAAGATTTACTTTACCCATTGAGACAGCTCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTATATAAAATAAGATTTACTTTACCCATTGAGACAGCTCTGCC  500

seq1  TCTCTAGTTTTTATGTAGACTTAAATAAGACATGTGACTGAATACAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTTTTTATGTAGACTTAAATAAGACATGTGACTGAATACAAAAT  550

seq1  ACCACATTTTCCCCAAAACTTACCACTAAGAAAGTATGGTCATCTTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTTTCCCCAAAACTTACCACTAAGAAAGTATGGTCATCTTGTGT  600

seq1  ACAACTTTCACAGTTTTTCAATTTCTTAACTTTGGGGGCGGGATGTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCACAGTTTTTCAATTTCTTAACTTTGGGGGCGGGATGTAGGT  650

seq1  GGCAAGATAGGATTTGGGGAAATTTTAGCTTGAATGTTGCTAAGCCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATAGGATTTGGGGAAATTTTAGCTTGAATGTTGCTAAGCCAATT  700

seq1  CTAGATGAGAATAGTTAGACATGTAGCTGAGAAAGTGGTCCCTTGAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGAGAATAGTTAGACATGTAGCTGAGAAAGTGGTCCCTTGAGCAA  750

seq1  AGGGCTTGCTGTGCAACCCACAAAGACAGGAGTTCAGCTCTCCAGCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGCTGTGCAACCCACAAAGACAGGAGTTCAGCTCTCCAGCACTC  800

seq1  ATGGAAATGCTAGATGAGTGTGGCATGTGAGATTCTGAGACAAGAGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATGCTAGATGAGTGTGGCATGTGAGATTCTGAGACAAGAGAGTC  850

seq1  CCTGGAACAAGTTAGCTAACTAGAATAGCCAACTGGGAAGGTCTGGGTTT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTGGAACAAGTTAGCTAACTAGAATAGCCAACTGGGAA-GTCTGGGTTT  899

seq1  AAATGAGCAGCCATGCCTCAATATATGAGATAGAGATTAGTCAAAGAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCAGCCATGCCTCAATATATGAGATAGAGATTAGTCAAAGAAGA  949

seq1  CACTCAACACCAACTT-CTAGATATATACATACAAGCAAACACACACACA  999
      |||||||||||||||| |||||||||||||||||||||| | ||||||||
seq2  CACTCAACACCAACTTCCTAGATATATACATACAAGCAACCCCACACACA  999

seq1  CAGGCATGCATGTCCA-CATGGACA-CAAACTATA-CACA-TGTACAT-G  1044
      |||||||||||||||| |||||||| ||||||||| |||| ||||||| |
seq2  CAGGCATGCATGTCCACCATGGACACCAAACTATACCACATTGTACATGG  1049

seq1  GGGAAG-ACATA--TTTAGGCACAG-CACTGGTTTATAACATATTTTTTT  1090
      |||||| |||||  || |||||||| |||| ||||  |||| ||||||  
seq2  GGGAAGAACATAATTTAAGGCACAGCCACTTGTTTTAAACAAATTTTT--  1097

seq1  CTTTTTGTATTTCTATAAGGATTGGGCATTTATTTCCAG-AAAAATTACT  1139
       | |||| ||||| | || || ||||||||||||||||| ||||||||||
seq2  -TCTTTGAATTTC-AAAAAGAATGGGCATTTATTTCCAGAAAAAATTACT  1145

seq1  GTTATGA  1146
      | |||||
seq2  GGTATGA  1152

seq1: chr11_103371977_103372168
seq2: B6Ng01-096M19.g_284_484 (reverse)

seq1  TGTGTGTATATATATGTGTATATATACATATACATATACATATACATATA  50
      ||||||||||||||||||| |||||| || |  ||||| || || |||| 
seq2  TGTGTGTATATATATGTGTGTATATATATGTGTATATATATGTATATATG  50

seq1  CATATACATATACACA-TACACATACACATACACATA------CACATAC  93
        | ||  | || | | || | ||| |  || | |||       | ||||
seq2  TGTGTATGTGTATAAATTATATATATATGTATATATATGTGTGTATATAC  100

seq1  ATATATATGTATATATGTGTGTGTATATGTATATATGTGTGTGTATATGT  143
      |||||| ||||||||||| | | ||||||| | | | | | ||||||| |
seq2  ATATATGTGTATATATGTATATATATATGTGTGTGTATATATGTATATAT  150

seq1  ATATGTGT--ATATATATATATATATATATATATATATATATATATATAT  191
      || |||||  ||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGCATATATATATATATATATATATATATATATATATATATAT  200

seq1  A  192
      |
seq2  A  201