BAC Information

Click to search

BAC

Clone NameB6Ng01-096P15
Chromosome6 (Build37)
Map Location 35,310,335 - 35,479,702
singlet/doubletdoublet
Overlap geneMtpn
Upstream geneAkr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneLOC100039312, LOC100039327, 9330158H04Rik, Chrm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P15.bB6Ng01-096P15.g
ACCDH907472DH907473
length1,1561,016
definitionDH907472|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P15, 5' end.DH907473|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,310,335 - 35,311,493)(35,478,689 - 35,479,702)
sequence
gaattcaagtgttgaatcagttttctacttctggcattagtcacaaccac
tgataaatacatatgtgtacatatttatttatgtatgtatatgttcatgt
atgcatatgccacatatatagatgtgtatatacacacatgcatatatgaa
tctgtctctctttcacacacatacacacatataaataattttcttagttc
ctgaaaaacatttttaaaccagagtctcattatatagcctactctggttt
ctagtttactttgtagcccaagctagacttgtagcccgggctgggcttga
cctgataatcttcctgcctctgccaccatagcgcccagatggtttgctga
gattctgttctgaacatttgcatccgtgttcaagaatacaatcagcctgt
acttctcctcgctcgtgttccctcacagtgtgaagatttttgtaacttca
aactgaattaggaatgatccttcatctcttcttatagagcttgtcacata
tttcatatgaaagtgtgaagcccgatgaaatctgctttaaaactatctaa
ggaggcaagattttaaagggaaggttatttactcctaattcaatttattt
agtgattcttgaataatgcaatctttccattgtaaaccagttttcataat
tcatattttcccactatttttcccctttcatttggtttctgctcactgat
ataaatttgtccatactggtttttctaatcttggtaaatctgctatacct
tttttgtattcctaatattgatttatttttcatttctattattatcagta
tttccagacatttgttaattttgttaatcacagcaaaaaccacattcttt
gtattggacattttatttttatgtctaaatggtattctaattattaatat
ctttttcaaatctttcattgtttttattctgctttttttgggatatagtg
atatttactttgctaactactttaaaaatatatgtttattttattttaat
tatgtgagttgtgtgtgtacctgtgagggcagatccctgaaggcagagga
ttttttgggaaatttggagacacaatttaaaacaacaataaggtaataca
atctaataatgttttctgtctttagaactagaaggccatagagaagaaac
aggtaa
gaattctctccccagctctggtgccagtcccatgacctggtttggtttct
aactccaccagtgaaagagaaggctagttagcacaattttcactggttca
ttcataattaattcagcaaataccagttaagcacctgcagtgccagcaat
tgtattagggaagcatgaacacaacaaaagtggatgcttctaaggatatg
tgttctttggggactttatttgagtgttcaagaaaacagcaaatacaatg
attatatggcttctgaataaactctctttcttaaatatatgaaatatgga
taaaacttagaaagtagctttatattttggtagtaaaatgcaactctata
aaaaatagatgatatatatgaaaatctatgataaatttatatttggttcc
aaaagaaagaaaattcaaaactgtaaaatatctgattcaaattagaattt
cagttaaaagaaaagaatacatcttctttgagtgccctattgtatgtaaa
tagtgaacacagtgtacatatagatacacatatcatttaactacataaag
gcttacccttttcttatagtcagagaagtgggaactgagtaactttccct
agctctcatagggagaggaggacaggaggatttcagctcagatctgagtc
attccagaagagcattcttgtttctttcccatcattatttattatacatt
tgagagctacaaatgatggggggtaggaatgaagtcttcttcctccctcc
tttccatttatttccctcccttgttatgggtttatttacaaatacaactt
tttagatctgtgacctattaaataggatagcagatactttccacgctgca
aaacctttttcagaaggaattgcaactacggatcactgagttcatacttt
gttaggtgaaggtacatttgatttcttttcttttcaaactgagaaccata
gaattttgagattttgagtgttatttttttttttaactttggtaaggctt
gctcctgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35310335_35311493
seq2: B6Ng01-096P15.b_50_1205

seq1  GAATTCAAGTGTTGAATCAGTTTTCTACTTCTGGCATTAGTCACAACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTTGAATCAGTTTTCTACTTCTGGCATTAGTCACAACCAC  50

seq1  TGATAAATACATATGTGTACATATTTATTTATGTATGTATATGTTCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATACATATGTGTACATATTTATTTATGTATGTATATGTTCATGT  100

seq1  ATGCATATGCCACATATATAGATGTGTATATACACACATGCATATATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATGCCACATATATAGATGTGTATATACACACATGCATATATGAA  150

seq1  TCTGTCTCTCTTTCACACACATACACACATATAAATAATTTTCTTAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTTTCACACACATACACACATATAAATAATTTTCTTAGTTC  200

seq1  CTGAAAAACATTTTTAAACCAGAGTCTCATTATATAGCCTACTCTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAACATTTTTAAACCAGAGTCTCATTATATAGCCTACTCTGGTTT  250

seq1  CTAGTTTACTTTGTAGCCCAAGCTAGACTTGTAGCCCGGGCTGGGCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTACTTTGTAGCCCAAGCTAGACTTGTAGCCCGGGCTGGGCTTGA  300

seq1  CCTGATAATCTTCCTGCCTCTGCCACCATAGCGCCCAGATGGTTTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATAATCTTCCTGCCTCTGCCACCATAGCGCCCAGATGGTTTGCTGA  350

seq1  GATTCTGTTCTGAACATTTGCATCCGTGTTCAAGAATACAATCAGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTTCTGAACATTTGCATCCGTGTTCAAGAATACAATCAGCCTGT  400

seq1  ACTTCTCCTCGCTCGTGTTCCCTCACAGTGTGAAGATTTTTGTAACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTCGCTCGTGTTCCCTCACAGTGTGAAGATTTTTGTAACTTCA  450

seq1  AACTGAATTAGGAATGATCCTTCATCTCTTCTTATAGAGCTTGTCACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATTAGGAATGATCCTTCATCTCTTCTTATAGAGCTTGTCACATA  500

seq1  TTTCATATGAAAGTGTGAAGCCCGATGAAATCTGCTTTAAAACTATCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATGAAAGTGTGAAGCCCGATGAAATCTGCTTTAAAACTATCTAA  550

seq1  GGAGGCAAGATTTTAAAGGGAAGGTTATTTACTCCTAATTCAATTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAAGATTTTAAAGGGAAGGTTATTTACTCCTAATTCAATTTATTT  600

seq1  AGTGATTCTTGAATAATGCAATCTTTCTTTCCATTGTAAACCAGTTTTCA  650
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  AGTGATTCTTGAATAATGCAA----TCTTTCCATTGTAAACCAGTTTTCA  646

seq1  TAATTCATATTTTCCCACTATTTTTCCCCTTTCATTTGGTTTCTGCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATATTTTCCCACTATTTTTCCCCTTTCATTTGGTTTCTGCTCAC  696

seq1  TGATATAAATTTGTCCATACTGGTTTTTCTAATCTTGGTAAATCTGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAATTTGTCCATACTGGTTTTTCTAATCTTGGTAAATCTGCTAT  746

seq1  ACCTTTTTTGTATTCCTAATATTGATTTATTTTTCA-TTCTATTATTATC  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCTTTTTTGTATTCCTAATATTGATTTATTTTTCATTTCTATTATTATC  796

seq1  AGTATTTCCAGACATTTGTTAATTTTGTTAATCACAGCAAAAACCACATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCCAGACATTTGTTAATTTTGTTAATCACAGCAAAAACCACATT  846

seq1  CTTTGTATTGGACATTTTA-TTTTATGTCTAAATGGTATTCTAATTATTA  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTTGTATTGGACATTTTATTTTTATGTCTAAATGGTATTCTAATTATTA  896

seq1  ATATC-TTTTCAAATC-TTCATTGTTTTTATTCTGCTTTTTTTGGGATAT  946
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  ATATCTTTTTCAAATCTTTCATTGTTTTTATTCTGCTTTTTTTGGGATAT  946

seq1  AGTGATATTTACTTTGCTAACTACTTTAAAAATATATGTTTATTTTATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTTACTTTGCTAACTACTTTAAAAATATATGTTTATTTTATTT  996

seq1  TAATTATGTGAGTTGTGTGTGTACCTGTGAGGGCAGATCCCTGAAAGGCC  1046
      |||||||||||||||||||||||||||||||||||||||||||||  | |
seq2  TAATTATGTGAGTTGTGTGTGTACCTGTGAGGGCAGATCCCTGAA--GGC  1044

seq1  AGAGGAATTTCTGGGAAAATTTGAGACACAA-TTAAAACAAACATAGGTA  1095
      |||||| ||| ||||||| || ||||||||| |||||||||  ||| |  
seq2  AGAGGATTTTTTGGGAAATTTGGAGACACAATTTAAAACAACAATAAGGT  1094

seq1  AATACAAATCTAATAATTGTTTCTGTCTTTAGAACTAGAAAAGCCATAGA  1145
      ||||| |||||||||||  ||||||||||||||||||| || ||||||||
seq2  AATAC-AATCTAATAATGTTTTCTGTCTTTAGAACTAG-AAGGCCATAGA  1142

seq1  GAAGACACAGGTAA  1159
      ||||| ||||||||
seq2  GAAGAAACAGGTAA  1156

seq1: chr6_35478689_35479702
seq2: B6Ng01-096P15.g_69_1084 (reverse)

seq1  ACACACACACACGAAGCAAGCCTTACCAAAG-TAAAAAAAAAAATAACAC  49
      ||||||||||| | ||||||||||||||||| ||||||||||||||||||
seq2  ACACACACACA-GGAGCAAGCCTTACCAAAGTTAAAAAAAAAAATAACAC  49

seq1  TCAAAATCTCAAAATTCTATGGTTCTCAGTTTGAAAAGAAAAAGAAATCA  99
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  TCAAAATCTCAAAATTCTATGGTTCTCAGTTTGAAAAG-AAAAGAAATC-  97

seq1  AAATGTACCTTCA-CTTACAAAGTATGAACTCAGTGATCCGTAGTTGCAA  148
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  AAATGTACCTTCACCTAACAAAGTATGAACTCAGTGATCCGTAGTTGCAA  147

seq1  TTCCTTCTG-AAAAGGTTTTGCAGCGTGGAAAGTATCTGCTATCCTATTT  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGAAAAAGGTTTTGCAGCGTGGAAAGTATCTGCTATCCTATTT  197

seq1  AATAGGTCACAGATCT-AAAAGTTGTATTTGTAAATAAACCCATAACAAG  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATAGGTCACAGATCTAAAAAGTTGTATTTGTAAATAAACCCATAACAAG  247

seq1  GGAGGGAAATAAATGGAAAGGAGGGAGGAAGAAGACTTCATTCCTA-CCC  295
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAGGGAAATAAATGGAAAGGAGGGAGGAAGAAGACTTCATTCCTACCCC  297

seq1  CCATCATTTGTAGCTCTCAAATGTATAATAAATAATGATGGGAAAGAAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTTGTAGCTCTCAAATGTATAATAAATAATGATGGGAAAGAAAC  347

seq1  AAGAATGCTCTTCTGGAATGACTCAGATCTGAGCTGAAATCCTCCTGTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCTCTTCTGGAATGACTCAGATCTGAGCTGAAATCCTCCTGTCC  397

seq1  TCCTCTCCCTATGAGAGCTAGGGAAAGTTACTCAGTTCCCACTTCTCTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCCTATGAGAGCTAGGGAAAGTTACTCAGTTCCCACTTCTCTGA  447

seq1  CTATAAGAAAAGGGTAAGCCTTTATGTAGTTAAATGATATGTGTATCTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAAAAGGGTAAGCCTTTATGTAGTTAAATGATATGTGTATCTAT  497

seq1  ATGTACACTGTGTTCACTATTTACATACAATAGGGCACTCAAAGAAGATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACTGTGTTCACTATTTACATACAATAGGGCACTCAAAGAAGATG  547

seq1  TATTCTTTTCTTTTAACTGAAATTCTAATTTGAATCAGATATTTTACAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTCTTTTAACTGAAATTCTAATTTGAATCAGATATTTTACAGT  597

seq1  TTTGAATTTTCTTTCTTTTGGAACCAAATATAAATTTATCATAGATTTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTTCTTTCTTTTGGAACCAAATATAAATTTATCATAGATTTTC  647

seq1  ATATATATCATCTATTTTTTATAGAGTTGCATTTTACTACCAAAATATAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCATCTATTTTTTATAGAGTTGCATTTTACTACCAAAATATAA  697

seq1  AGCTACTTTCTAAGTTTTATCCATATTTCATATATTTAAGAAAGAGAGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTTCTAAGTTTTATCCATATTTCATATATTTAAGAAAGAGAGTT  747

seq1  TATTCAGAAGCCATATAATCATTGTATTTGCTGTTTTCTTGAACACTCAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAAGCCATATAATCATTGTATTTGCTGTTTTCTTGAACACTCAA  797

seq1  ATAAAGTCCCCAAAGAACACATATCCTTAGAAGCATCCACTTTTGTTGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCCCCAAAGAACACATATCCTTAGAAGCATCCACTTTTGTTGTG  847

seq1  TTCATGCTTCCCTAATACAATTGCTGGCACTGCAGGTGCTTAACTGGTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTTCCCTAATACAATTGCTGGCACTGCAGGTGCTTAACTGGTAT  897

seq1  TTGCTGAATTAATTATGAATGAACCAGTGAAAATTGTGCTAACTAGCCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAATTAATTATGAATGAACCAGTGAAAATTGTGCTAACTAGCCTT  947

seq1  CTCTTTCACTGGTGGAGTTAGAAACCAAACCAGGTCATGGGACTGGCACC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCACTGGTGGAGTTAGAAACCAAACCAGGTCATGGGACTGGCACC  997

seq1  AGAGCTGGGGAGAGAATTC  1014
      |||||||||||||||||||
seq2  AGAGCTGGGGAGAGAATTC  1016