BAC Information

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BAC

Clone NameB6Ng01-098E05
Chromosome6 (Build37)1 (Build37)
Map Location 70,802,115 - 70,802,631134,670,453 - 134,671,368
singlet/doubletsingletsinglet
Overlap geneEif2ak3
Upstream geneIgk, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia
Downstream gene1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098E05.bB6Ng01-098E05.g
ACCDH908402DH908403
length1,140910
definitionDH908402|Mus musculus domesticus DNA, BAC clone: B6Ng01-098E05, 5' end.DH908403|Mus musculus domesticus DNA, BAC clone: B6Ng01-098E05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,802,115 - 70,802,631)(134,670,453 - 134,671,368)
sequence
gaattctcgagacacagtacacagttatgataaggtgaggaatgtgaact
ccttcaatagccacgcagggacacattagaaaaatgaattatagctgtga
attagttaaactgctttgactcctggcaggtcctgcacacactgcaccta
cctaagagctctggattcacgagtgaaagaaaggcaaacacatccaaaac
agctaattttgatgtgccttgactagcttaatggctgggcatttctaaac
ctccctgaggccagcacacattttcctccagtattcctggcttaacaact
tctaaatctgtattttattttttgctgccctgttatcttctgggcagcct
cccctccacccccacctccctatagggccgctttccctttccatctacat
tgctggatgctttctctcctgcagctcttaaatctgatttcttctctaga
gtcacggcgattctcctcttcccctctccctcggccacttgctcaggtaa
cctaaaagtcccaccccatctccctgcccagctattggctgacagcaatt
ctttattactaatcgaagccagctgggggcagggaccctagggtctagaa
gcggcttatgggagccaaattaagacaaagcattagaaccaattcccaac
atctcaccctttctgcccacattttttaaaaaaggctctttttctcagac
acaaatttgagcataaccataacaattttgtaaattacaaagtgtgatat
ataattaatatccagtccatcatatttgtcaattagataaagtactccac
tatttatcctgacttaaagagcttacaattttttaaaagattaatttatt
atatgtaagtacattattgctgtcttcagacaccccagaagagggcatca
gatctcattatggatggttgtgagccccatgtggttgctgggatttgact
caggacctttggaagagcagttagtgtccttaactgaagagccttttctt
taggccaacagtttaaatttttacctaaattatgtctgactttaacttga
attacaatctgaaccatctttctgtatcattttctccaaggttaacaact
ggattttgcttaggggatctatattcaattttcaccctgt
gaattctctgcactttgtcaattccaggtggtagatatacagatatttat
tgggttcatttccagtgctctttctctgtgtatgaactagttcataatct
tgtcatttaaaaaaaaaaaagcaaaagaggctctcgttcttggggctatg
tggagaataggggcctcaagggtctagaaaagactctttaatgggagttc
ccacagacatggtgggatggtatagataaaggccttggcagtggacagga
aagacatgggctacctccaaagggtggcttcacacttggcaacctgctgg
gggagggcggaagagtggaaggctttgggcttaggatggtgtaggtgagg
cagggttgctaggcagaataggaagtaactgatgcctgctctgaagccca
tgggttgttttccatctgtgtttaaagccaaactgaagaatggacaggga
gctaaagtgggtaaagagaagaccatttcagaagagtgtggtatgagaag
aaacctaaggaggagcccaggagaagctcagaaacagggagtgtggcaag
tgtggcctctctaaaaggctccccctttgtagagccaactgccttttact
tctgatcctaagtttctcagtgaacctcacatttgcaggatgtcaaaaga
aatggtgttggcaccgttctactctctgacaaataaacgcctggcagcca
cctaaaggagggacgaaagggttcatctcatttaaggtttcagacctcac
cagtccatcacgagggttggggagtaggggacattgcctgcaggggtggc
tgatcaggaacagccagaattcggagatatgaatgtgtagtctaccagaa
tgcagtgagaacccaagatgggttcaaactgatctacctcggtaccttct
ctagtgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_70802115_70802631
seq2: B6Ng01-098E05.b_884_1184 (reverse)

seq1  ACAGGGTGAAAATTGAATGAACAAGGGAACCTTGTTGAAAGGCTGGAAAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTGGGGGGTGTGCCTGTTGTCATGGGTTGAGAGAGGTGTGAGGAGAGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGATTCGAGCTTGGCAGAAGAAAGTACACAGGAGCCAAACTGCAAAGCAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGCACAGCAGAGAAGTTCATCCGAGCTCTCCTCTGGAAGCAAGCTCAT  200
           ||||     || || |    || || |||    ||||||  ||  
seq2  -----ACAGGGTGAAAATTGAATATAGATCCCCT----AAGCAAAATC--  39

seq1  CAGAAAAGCAAAGAAATGGT--CCAGGGCCAGAA-GATACCTCAAGAGAG  247
      |||             || |  ||  ||  | || |||||    ||| ||
seq2  CAG------------TTGTTAACCTTGGAGAAAATGATAC----AGAAAG  73

seq1  GCTTTTGAGATGTTTTGATGAACAACGAGTCTGTTCTAGGGCCAGGGCAG  297
          || ||||       || |   | |||      ||     | | |||
seq2  ATGGTTCAGAT-------TGTAATTCAAGT------TA-----AAGTCAG  105

seq1  AAACAAATGTAAAGGCAGCTTCGGAAATAGAATCAAGAGTTCACAGCTGG  347
      | | ||             || || || | | | ||      || | |||
seq2  ACATAA------------TTTAGGTAA-AAATTTAA------ACTGTTGG  136

seq1  GCTGGCGAGGTGGCTCAGCAGGTAAGAGCACTGACTGCTCTTCCGAAGGT  397
       ||   ||   |||||  ||| ||||  |||| ||||||||||| |||||
seq2  CCTAAAGAAAAGGCTCTTCAGTTAAGGACACTAACTGCTCTTCCAAAGGT  186

seq1  CCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCATAAT  447
      |||||| |||||||||||||||||||||| |||||||||||| |||||||
seq2  CCTGAG-TCAAATCCCAGCAACCACATGG-GGCTCACAACCATCCATAAT  234

seq1  GAGATCTGATGCCCTCTTCTAGTGTGTCTGAAGTCAGCTACAGTGTACTT  497
      |||||||||||||||||||| | |||||||||| |||| | | |||||||
seq2  GAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGACAGCAATAATGTACTT  284

seq1  ATATATAATAATAAATAAAT  517
      | ||   ||||||||| |||
seq2  ACAT---ATAATAAATTAAT  301

seq1: chr1_134670453_134671368
seq2: B6Ng01-098E05.g_67_976

seq1  GAATTCTCTGCACTTTGTCAATTCCAGGTGGTAGATATACAGATATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCACTTTGTCAATTCCAGGTGGTAGATATACAGATATTTAT  50

seq1  TGGGTTCATTTCCAGTGCTCTTTCTCTGTGTATGAACTAGTTCATAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCATTTCCAGTGCTCTTTCTCTGTGTATGAACTAGTTCATAATCT  100

seq1  TGTCATTTAAAAAAAAAAAAGCAAAAGAGGCTCTCGTTCTTGGGGCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTAAAAAAAAAAAAGCAAAAGAGGCTCTCGTTCTTGGGGCTATG  150

seq1  TGGAGAATAGGGGCCTCAAGGGTCTAGAAAAGACTCTTTAATGGGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATAGGGGCCTCAAGGGTCTAGAAAAGACTCTTTAATGGGAGTTC  200

seq1  CCACAGACATGGTGGGATGGTATAGATAAAGGCCTTGGCAGTGGACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACATGGTGGGATGGTATAGATAAAGGCCTTGGCAGTGGACAGGA  250

seq1  AAGACATGGGCTACCTCCAAAGGGTGGCTTCACACTTGGCAACCTGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGGCTACCTCCAAAGGGTGGCTTCACACTTGGCAACCTGCTGG  300

seq1  GGGAGGGCGGAAGAGTGGAAGGCTTTGGGCTTAGGATGGTGTAGGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCGGAAGAGTGGAAGGCTTTGGGCTTAGGATGGTGTAGGTGAGG  350

seq1  CAGGGTTGCTAGGCAGAATAGGAAGTAACTGATGCCTGCTCTGAAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGCTAGGCAGAATAGGAAGTAACTGATGCCTGCTCTGAAGCCCA  400

seq1  TGGGTTGTTTTCCATCTGTGTTTAAAGCCAAACTGAAGAATGGACAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTTTTCCATCTGTGTTTAAAGCCAAACTGAAGAATGGACAGGGA  450

seq1  GCTAAAGTGGGTAAAGAGAAGACCATTTCAGAAGAGTGTGGTATGAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGTGGGTAAAGAGAAGACCATTTCAGAAGAGTGTGGTATGAGAAG  500

seq1  AAACCTAAGGAGGAGCCCAGGAGAAGCTCAGAAACAGGGAGTGTGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAGGAGGAGCCCAGGAGAAGCTCAGAAACAGGGAGTGTGGCAAG  550

seq1  TGTGGCCTCTCTAAAAGGCTCCCCCTTTGTAGAGCCAACTGCCTTTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCTCTAAAAGGCTCCCCCTTTGTAGAGCCAACTGCCTTTTACT  600

seq1  TCTGATCCTAAGTTTCTCAGTGAACCTCACATTTGCAGGATGTCAAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCTAAGTTTCTCAGTGAACCTCACATTTGCAGGATGTCAAAAGA  650

seq1  AATGGTGTTGGCACCGTTCTACTCTCTGACAAATAAACGCCTGGCAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTTGGCACCGTTCTACTCTCTGACAAATAAACGCCTGGCAGCCA  700

seq1  CCTAAAGGAGGGACGAAAGGGTTCATCTCATTTAAGGTTTCAGACCTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGAGGGACGAAAGGGTTCATCTCATTTAAGGTTTCAGACCTCAC  750

seq1  CAGTCCATCACGAGGG-TAGGGAGTAGGGGACATTGCCTGCAGGGGTGGC  799
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  CAGTCCATCACGAGGGTTGGGGAGTAGGGGACATTGCCTGCAGGGGTGGC  800

seq1  TGAGTCAGGAACAGCCAGAACTTGGGAGAATATGAATGTGGTAGTCTACC  849
      ||| |||||||||||||||| || |||| |||||||||| ||||||||||
seq2  TGA-TCAGGAACAGCCAGAA-TTCGGAG-ATATGAATGT-GTAGTCTACC  846

seq1  AGAATGCAGGTGAGAACCCAAGATGGGTTCAGACTGATCTACCTCGGCTA  899
      |||||||| |||||||||||||||||||||| ||||||||||||||| ||
seq2  AGAATGCA-GTGAGAACCCAAGATGGGTTCAAACTGATCTACCTCGG-TA  894

seq1  CCTTCCTCTAGTGACCT  916
      |||| |||||||||| |
seq2  CCTT-CTCTAGTGACTT  910