BAC Information

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BAC

Clone NameB6Ng01-098G20
Chromosome6 (Build37)3 (Build37)
Map Location 18,835,442 - 18,835,96849,041,036 - 49,041,596
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098G20.bB6Ng01-098G20.g
ACCDH908524DH908525
length9521,116
definitionDH908524|Mus musculus domesticus DNA, BAC clone: B6Ng01-098G20, 5' end.DH908525|Mus musculus domesticus DNA, BAC clone: B6Ng01-098G20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(49,041,036 - 49,041,596)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgatacgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatcattgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccgagatattttatattat
tt
gaattcactgaaaacccaggataatgaaaacaacactgaacaatacaaaa
tggctggaggtatcaccatcccccatttcaggttatactgtaaagctaca
aaaattataacaacatggtatttgttcaaaaacacccacaaatcctctat
ctacattgatgtcctgcctgaaatgatttgttagggcaatggtggcacaa
cacttgtgtgaataaccaaccaataactgagctgtcttgaggtcacccat
gagataggactcatacccaacagtgcttgggtgaacaagaatctgagact
agatatctcagggcccttgaccaaaatgaaataatacatgtctaaaaaac
atgaataaaagtaaaatcgagaaaaaaacatagtgataagaagactccta
atgatattctgctatactcatacaacagtgctgttttcaaccatcatcag
aggagcttcctcctctaacacacaggaacaaatacagagactgacagtca
ggcatcatgtcgagagttggagaacttgaaacactcagtgctaaaagagc
tgtctccatcaaatctcttttctcagagatcagggaaccctgtaaaagag
gaatctgaaagaatataagaccagaaggaacagagaacatcaagaataca
aggctctctaaattgacatgagcaactcacagagactgaggcagcatgcg
catgtcctgtcctgatctaaatcagatcctctgtgcttagattgtgactt
tcaacttagtgtttttgtcgtatcactgtgtgtacaaatgagtgggtctc
tgattcttatgccctctcttctgttcttttccttcttttgatctgtcttg
tctgattttgatattctagacttttgtttatcatcttcattttggaagaa
aaattaatgtatgaatgagtgtaaaccttgcaactacagtaaaggttaac
aatgaaattgtcatgaatacttgctggaagatggaaaatccacttttcac
caatttggtagccctggctaccatcaccactgcagagcaaatctttatgt
tcaggagtacttgactacaaattgttgattccataagttttggttggggg
gtttttgtttttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-098G20.b_47_574 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| | ||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGTATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr3_49041036_49041596
seq2: B6Ng01-098G20.g_623_1183 (reverse)

seq1  AAATAAAAACAAAAA-CCACCAACCAAAACTTATGGAATCAACAATTTGT  49
      ||||||||||||||| || |||||||||||||||||||||||||||||| 
seq2  AAATAAAAACAAAAACCCCCCAACCAAAACTTATGGAATCAACAATTTG-  49

seq1  TAGTCAAGTACTCCTGAACAT-AAGATTTGCTCTGCAGTGGTTGATGGTA  98
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  TAGTCAAGTACTCCTGAACATAAAGATTTGCTCTGCAGTGG-TGATGGTA  98

seq1  GCCAGGGCTACCAAATTGGTGAAAAGTGATTTTTCCATCTTCCAGCAAGT  148
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GCCAGGGCTACCAAATTGGTGAAAAGTGGATTTTCCATCTTCCAGCAAGT  148

seq1  ATTCATGACAATTTCATTGTTAACCTTTACTGTAGTTGCAAGGTTTACAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGACAATTTCATTGTTAACCTTTACTGTAGTTGCAAGGTTTACAC  198

seq1  TCATTCATACATTAATTTTTCTTCCAAAATGAAGATGATAAACAAAAGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATACATTAATTTTTCTTCCAAAATGAAGATGATAAACAAAAGTC  248

seq1  TAGAATATCAAAATCAGACAAGACAGATCAAAAGAAGGAAAAGAACAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATCAAAATCAGACAAGACAGATCAAAAGAAGGAAAAGAACAGAA  298

seq1  GAGAGGGCATAAGAATCAGAGACCCACTCATTTGTACACACAGTGATACG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCATAAGAATCAGAGACCCACTCATTTGTACACACAGTGATACG  348

seq1  ACAAAAACACTAAGTTGAAAGTCACAATCTAAGCACAGAGGATCTGATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACACTAAGTTGAAAGTCACAATCTAAGCACAGAGGATCTGATTT  398

seq1  AGATCAGGACAGGACATGCGCATGCTGCCTCAGTCTCTGTGAGTTGCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGACAGGACATGCGCATGCTGCCTCAGTCTCTGTGAGTTGCTCA  448

seq1  TGTCAATTTAGAGAGCCTTGTATTCTTGATGTTCTCTGTTCCTTCTGGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTTAGAGAGCCTTGTATTCTTGATGTTCTCTGTTCCTTCTGGTC  498

seq1  TTATATTCTTTCAGATTCCTCTTTTACAGGGTTCCCTGATCTCTGAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCTTTCAGATTCCTCTTTTACAGGGTTCCCTGATCTCTGAGAAA  548

seq1  AGAGATTTGATGG  561
      |||||||||||||
seq2  AGAGATTTGATGG  561