BAC Information

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BAC

Clone NameB6Ng01-099C16
Chromosome6 (Build37)
Map Location 47,732,405 - 47,870,162
singlet/doubletdoublet
Overlap geneEG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s
Downstream geneZfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099C16.bB6Ng01-099C16.g
ACCDH909035DH909036
length1,208862
definitionDH909035|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C16, 5' end.DH909036|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,868,946 - 47,870,162)(47,732,405 - 47,733,268)
sequence
gaattctcataggcaagtgattttcttccatgctcacctatgacttggct
ttttctggtcaatccattatagagtgttaattatggtaatcacttgcatt
gcagaattcaagatagccttaatcacaaataattaacctagtcctcaccg
ggcagtgatggctcatgcctttaatcccagcacttgcgaggcagaggtgg
atgggtttctgagttcgaggccagcctggtctacagagtgagtgccaggg
ctagaaaccctgtctcaaaaaaactaaataaataacctagtcctcatgcc
agggtgccagggtattagaggcaatgtgttctgcattctggcttggaaac
atctggccacatcattaccaccccagcgctcaggtgtttgaggccagcct
cagctatatagtgagtttttgactagccagaaatatctaaagagacattg
atccaaacaacacccccaaacccagtacttgcagtactcaaatgcctcat
ttccattacattgtcctggacatgctgagtgagaatgacatgagtttcca
ctaagtgtgaatagcttcctctaagaattcaagtactctcactagactgg
tcccttcttcatttttctgcaaatgatccctgtctacactgactacaact
aacaactttctctagaacccaagccgatggcctgctgaaaaaaaaaattc
tcagcatctgttttaacaggcacttaaaaacctacatttatattaaaata
ataataatttttttaaaagcgctgactcatttaagccccccacagcagtc
tgggtgtgtctgtgccttcattttatctttgtttgttgcctttgtttgga
tcaaattcctgcttgactccataaccgtgtcaatcagttgagtgtgtcta
cttgtcccatctcatcccctttcaagctgaaggcagaggtaagtcatttg
tcctgaaccagcagcaccttgaatccctgggaagagcagatggtaaagga
tagatcatgtctcagataagggcaattattctttgtgtgtgaagcttgac
cctggagagacctcatctttgtaagaaccagatgaatcctctagcaattc
attggcagcaagaaggattttatcacttcaagaatccgaactggacagcg
atatctaaaccattattgacccagaagcttatactgtaaaggacatagcc
tcagcttg
gaattcagactcagctagtgctgtgatctgaatgggagcctttatctttg
tgcactggaatcctaaacaccagtgtgagactgtggtgtattgggaggag
tcctgagtgcttagattttgagacctctgtctccttgaattgctaatgac
tctattaaaagagctggaagcagaaggttttcttcctttcaccactcacg
cacacagaatccaatctaccttttgtctttccagcagctgctctgtgaga
acacagaaaacacatatcagatgctgttatatatgtgtagtggctattcc
tggttgtcaacttgacaatatttggaatgaactacaatccggaattggaa
ggctcaccagtgacccttatctggaggcttggagatccttatctggatct
tggtttgaagatcttgagccatagtggctatggattccagaagattgaat
ctccgagtttaaggaacacacctttaatctgggctacgcctttcatctgg
gattaaaggtgtggtggaacacacctttaatctgggctacaccttctgct
ggagacaatataaggacattggaagaagggagtctagctcgagctcttgc
tccttcgcctgcttgctgcgtgagactgagtaactgctagatccttggac
ttccactcacagctgcgactgaacaattgttgggaattgggctgccgact
gtaagtcatcaataaattcctttactatctagagactatccataaattct
gtgactctagagaaccctactaatacaatatgtttatattcacataaatt
attccaatctagagtattctgttaaagtggcataagacacactaaaaatt
atatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47868946_47870162
seq2: B6Ng01-099C16.b_46_1253 (reverse)

seq1  CAAGCTGAGGCTA-GTCCTTGTCACGTAATTAAGCTGTCTTGGTCAATAA  49
      ||||||||||||| ||||||  || |||  |||||| ||| ||||||| |
seq2  CAAGCTGAGGCTATGTCCTTTACA-GTA--TAAGCT-TCTGGGTCAAT-A  45

seq1  ATGGTCTAGATGATCGCTGTCCCAGTTCTGATTCTGTGAAGTGATTAGAA  99
      ||||| ||||| |||||||| ||||||| |||||| |||||||||   ||
seq2  ATGGTTTAGAT-ATCGCTGT-CCAGTTCGGATTCT-TGAAGTGAT--AAA  90

seq1  GTCCTTCTTGCTGCCATTGAATTGCTTAAGAGGATCCATCTGGTTCTTAC  149
       ||||||||||||||| |||||||||  ||||||| ||||||||||||||
seq2  ATCCTTCTTGCTGCCAATGAATTGCT--AGAGGATTCATCTGGTTCTTAC  138

seq1  -AAGATGAGGTCTGCTCCAGGGTACAGCTTCACACAC-AAGGATAATTGC  197
       |||||||||||| |||||||||  |||||||||||| ||| ||||||||
seq2  AAAGATGAGGTCT-CTCCAGGGTCAAGCTTCACACACAAAGAATAATTGC  187

seq1  CCTTATCTGAGACATGATCTATCCTTTACACTCTGCTCTT-CCAGGGATT  246
      |||||||||||||||||||||||||||||  ||||||||| |||||||||
seq2  CCTTATCTGAGACATGATCTATCCTTTACCATCTGCTCTTCCCAGGGATT  237

seq1  CAAGGTGACTGCTGGTTCAGGAC-AATGACTTACCTCTGCCTTCAGCTTG  295
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGGTG-CTGCTGGTTCAGGACAAATGACTTACCTCTGCCTTCAGCTTG  286

seq1  AAAGGGGATGAGATGGGACAAGTAGACACACTCAACTGATTGACACGGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGATGAGATGGGACAAGTAGACACACTCAACTGATTGACACGGTT  336

seq1  ATGGAGTCAAGCAGGAATTTGATCCAAACAAAGGCAACAAACAAAGATAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTCAAGCAGGAATTTGATCCAAACAAAGGCAACAAACAAAGATAA  386

seq1  AATGAAGGCACAGACACACCCAGACTGCTGTGGGGGGCTTAAATGAGTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCACAGACACACCCAGACTGCTGTGGGGGGCTTAAATGAGTCA  436

seq1  GCGCTTTTAAAAAAATTATTATTATTTTAATATAAATGTAGGTTTTTAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTTTAAAAAAATTATTATTATTTTAATATAAATGTAGGTTTTTAAG  486

seq1  TGCCTGTTAAAACAGATGCTGAGAATTTTTTTTTTCAGCAGGCCATCGGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTAAAACAGATGCTGAGAATTTTTTTTTTCAGCAGGCCATCGGC  536

seq1  TTGGGTTCTAGAGAAAGTTGTTAGTTGTAGTCAGTGTAGACAGGGATCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCTAGAGAAAGTTGTTAGTTGTAGTCAGTGTAGACAGGGATCAT  586

seq1  TTGCAGAAAAATGAAGAAGGGACCAGTCTAGTGAGAGTACTTGAATTCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAAAATGAAGAAGGGACCAGTCTAGTGAGAGTACTTGAATTCTT  636

seq1  AGAGGAAGCTATTCACACTTAGTGGAAACTCATGTCATTCTCACTCAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGCTATTCACACTTAGTGGAAACTCATGTCATTCTCACTCAGCA  686

seq1  TGTCCAGGACAATGTAATGGAAATGAGGCATTTGAGTACTGCAAGTACTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGACAATGTAATGGAAATGAGGCATTTGAGTACTGCAAGTACTG  736

seq1  GGTTTGGGGGTGTTGTTTGGATCAATGTCTCTTTAGATATTTCTGGCTAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGGGTGTTGTTTGGATCAATGTCTCTTTAGATATTTCTGGCTAG  786

seq1  TCAAAAACTCACTATATAGCTGAGGCTGGCCTCAAACACCTGAGCGCTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACTCACTATATAGCTGAGGCTGGCCTCAAACACCTGAGCGCTGG  836

seq1  GGTGGTAATGATGTGGCCAGATGTTTCCAAGCCAGAATGCAGAACACATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAATGATGTGGCCAGATGTTTCCAAGCCAGAATGCAGAACACATT  886

seq1  GCCTCTAATACCCTGGCACCCTGGCATGAGGACTAGGTTATTTATTTAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAATACCCTGGCACCCTGGCATGAGGACTAGGTTATTTATTTAGT  936

seq1  TTTTTTGAGACAGGGTTTCTAGCCCTGGCACTCACTCTGTAGACCAGGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTTTCTAGCCCTGGCACTCACTCTGTAGACCAGGCT  986

seq1  GGCCTCGAACTCAGAAACCCATCCACCTCTGCCTCGCAAGTGCTGGGATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCAGAAACCCATCCACCTCTGCCTCGCAAGTGCTGGGATT  1036

seq1  AAAGGCATGAGCCATCACTGCCCGGTGAGGACTAGGTTAATTATTTGTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATGAGCCATCACTGCCCGGTGAGGACTAGGTTAATTATTTGTGA  1086

seq1  TTAAGGCTATCTTGAATTCTGCAATGCAAGTGATTACCATAATTAACACT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTATCTTGAATTCTGCAATGCAAGTGATTACCATAATTAACACT  1136

seq1  CTATAATGGATTGACCAGAAAAAGCCAAGTCATAGGTGAGCATGGAAGAA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGGATTGACCAGAAAAAGCCAAGTCATAGGTGAGCATGGAAGAA  1186

seq1  AATCACTTGCCTATGAGAATTC  1217
      ||||||||||||||||||||||
seq2  AATCACTTGCCTATGAGAATTC  1208

seq1: chr6_47732405_47733268
seq2: B6Ng01-099C16.g_68_929

seq1  GAATTCAGACTCAGCTAGTGCTGTGATCTGAATGGGAGCCTTTATCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTCAGCTAGTGCTGTGATCTGAATGGGAGCCTTTATCTTTG  50

seq1  TGCACTGGAATCCTAAACACCAGTGTGAGACTGTGGTGTATTGGGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGAATCCTAAACACCAGTGTGAGACTGTGGTGTATTGGGAGGAG  100

seq1  TCCTGAGTGCTTAGATTTTGAGACCTCTGTCTCCTTGAATTGCTAATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTTAGATTTTGAGACCTCTGTCTCCTTGAATTGCTAATGAC  150

seq1  TCTATTAAAAGAGCTGGAAGCAGAAGGTTTTCTTCCTTTCACCACTCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAAAGAGCTGGAAGCAGAAGGTTTTCTTCCTTTCACCACTCACG  200

seq1  CACACAGAATCCAATCTACCTTTTGTCTTTCCAGCAGCTGCTCTGTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAATCCAATCTACCTTTTGTCTTTCCAGCAGCTGCTCTGTGAGA  250

seq1  ACACAGAAAACACATATCAGATGCTGTTATATATGTGTAGTGGCTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAACACATATCAGATGCTGTTATATATGTGTAGTGGCTATTCC  300

seq1  TGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAATTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAATTGGAA  350

seq1  GGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATCT  400

seq1  TGGTTTGAAGATCTTGAGCCATAGTGGCTATGGATTCCAGAAGATTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAAGATCTTGAGCCATAGTGGCTATGGATTCCAGAAGATTGAAT  450

seq1  CTCCGAGTTTAAGGAACACACCTTTAATCTGGGCTACGCCTTTCATCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAGTTTAAGGAACACACCTTTAATCTGGGCTACGCCTTTCATCTGG  500

seq1  GATTAAAGGTGTGGTGGAACACACCTTTAATCTGGGCTACACCTTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGGTGGAACACACCTTTAATCTGGGCTACACCTTCTGCT  550

seq1  GGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCGAGCTCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAGCTCGAGCTCTTGC  600

seq1  TCCTTCGCCTGCTTGCTGCGTGAGACTGAGTAACTGCTAGATCCTTGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGCCTGCTTGCTGCGTGAGACTGAGTAACTGCTAGATCCTTGGAC  650

seq1  TTCCACTCACAGCTGCGACTGAACAATTGTTGGGAATTGGGCTGCCGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCACAGCTGCGACTGAACAATTGTTGGGAATTGGGCTGCCGACT  700

seq1  GTAAGTCATCAATAAATTCCTTTACTATCTAGAGACTATCCATAAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCATCAATAAATTCCTTTACTATCTAGAGACTATCCATAAATTCT  750

seq1  GTGACTCTAGAGAACCCTAACTAATACAATATG-TTATATTCACATAAAT  799
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  GTGACTCTAGAGAACCCT-ACTAATACAATATGTTTATATTCACATAAAT  799

seq1  TA-TCCAATCTAGAGTATTCTGTTAAAGTGGCATAAGACACACTAAAAAA  848
      || |||||||||||||||||||||||||||||||||||||||||||||  
seq2  TATTCCAATCTAGAGTATTCTGTTAAAGTGGCATAAGACACACTAAAA--  847

seq1  TAATATATATATATAT  864
       | |||||||||||||
seq2  -ATTATATATATATAT  862