BAC Information

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BAC

Clone NameB6Ng01-099F10
Chromosome6 (Build37)3 (Build37)
Map Location 18,835,957 - 18,836,43567,020,053 - 67,021,127
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099F10.bB6Ng01-099F10.g
ACCDH909158DH909159
length1,0361,058
definitionDH909158|Mus musculus domesticus DNA, BAC clone: B6Ng01-099F10, 5' end.DH909159|Mus musculus domesticus DNA, BAC clone: B6Ng01-099F10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,957 - 18,836,435)(67,020,053 - 67,021,127)
sequence
gaattctttgtttagctctgtgccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttaaatatattgaaattcattgtt
tttaatagctgagtagtactccattgtgtaaatgtaccacattttctgta
tccattcctctgttgaggggcatctgggttctttccagcttctggctatt
ataaataaggctgctatgaacatagtggagcatgtgttcttattaccagt
tggaacatcttctggatatatgcccaggagaggtatagctggatcctctg
gttagtactatgtccaattttctgaggaactgccagactgatttccagag
tggttgtaaaagcttgcaatcccaccaacaatggaggagtgttcctcttt
ctccacaaccttaccagcatctgctgtcacatgaatttttgatcttagcc
attctgactggtgtgaggtggaatctcagggttgttttgatttgcatttc
cttgatgattaaggatgttgaacattttttcaggtgcttctcagccattt
ggtattcctcagttgagaattctttgtttagctctgtgccccatttttta
atggggttatttgattttctggagaccaactttttgacttctttgtatat
attggatattagtcccctatctgatttagaattggtgaaaatcctttccc
aatatgttggtggcctttttgtcacattgacagtttcttctgccttacag
aagctttgcaattttatgaggtcccatttgtcaattcttgatcttacagc
acaagccattgctcttctgttcaggaattcttcacctatgcccatatctt
caaggctttttccccactttctcctctataagtttagtgtctccggttta
tgtggagttccttgacccacttagacttgatcttgtacagaagatagaat
ggatcaattcacattcttctacatgctactgccagtaagccagcaccatt
tgtgaaatgctgtcttttttcactgatgttttagct
gaattcttggtttactgatactcagtaaatgagtaaattactggtagcat
atgtaaatgctactgacagaccactgaagttaaatcctgatctggaattt
agagtagtttggaagcaaaagaattggctcagtggctaggaccacttgct
ttacagagggcccacagtttggttcccaaaacctttgtgttagctcatga
cgttttctaactccagtgccacatctgatatactcttctggcccagaaag
gaacaaggcatgcccatagtcaatatacatacatgcaggggaaacactca
tacaaaaaataaaaatgagtaaatcttttaaaaatttaacaagtagttat
ggatttcactttttatatgaaacatatgaatgcatataataatttcttca
ttattagtgtttcctgtttagagtactctttaacacgggagtgttaaaga
tgcagcttacaatagaacacttctgtttacattcctgcattcatataagt
gttcctatgccgtcttcattatggaaagcttcagtaatggatgcttacta
ttcagggaatacagggaaaacagttgtttgccacagtaggccaatggatt
gggtactttctttggctgtgatatcagagagaactcatagttacaacttc
tctgtatatagagcaacccatagtatattctaaatcactgaaaggttttt
tttcctcctatagaaatactttttaatttagaatttatagctatataggt
tctcatagaaacagatgtaaaaagtgatggtagggagtggcgggagatgc
aagtctgggaagcgcctccgcgccttctcagtcttcctctctagagcggg
aagggaagggaagcgctgcttgggtaatcccgacctgcagttcccaactt
cctacatggacatggacatggaaacataggaaatacagacgtcactagac
cttgagaatttatacatgcaaggcacacaaacagctttcttcgctttata
gtccctatatatttaatcatgagctgatgccacctccacacgggacagct
ataatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835957_18836435
seq2: B6Ng01-099F10.b_142_621 (reverse)

seq1  AACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAA  50
      ||||||||||||||| |||||||||||| |||||| ||||||||||||||
seq2  AACAAAGAATTCTCAACTGAGGAATACCAAATGGCTGAGAAGCACCTGAA  50

seq1  AAAATGTTCAACATCCTTAATCATCAGGGAAATGGAAATCAAAACAACCC  100
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  AAAATGTTCAACATCCTTAATCATCAAGGAAATGCAAATCAAAACAACCC  100

seq1  TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCATGT  150

seq1  GACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTG  200
      |||||||||||||||   || |||||||||||||||||||||||||||||
seq2  GACAGCAGATGCTGGTAAGGTTGTGGAGAAAGAGGAACACTCCTCCATTG  200

seq1  TTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGT  250
      |||||||||||||| |||| ||||||||||||||||||| ||||||| ||
seq2  TTGGTGGGATTGCAAGCTTTTACAACCACTCTGGAAATCAGTCTGGCAGT  250

seq1  TGCTCAGAAAATTGGACATAGTACT-ACTGGAGGATCCAGCATTACCTCT  299
      | ||||||||||||||||||||||| ||  |||||||||||  |||||||
seq2  TCCTCAGAAAATTGGACATAGTACTAACCAGAGGATCCAGCTATACCTCT  300

seq1  CCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCT  349
      |||||||||||||||||||||||  ||||||||||| ||| |||||||||
seq2  CCTGGGCATATATCCAGAAGATGTTCCAACTGGTAATAAGAACACATGCT  350

seq1  CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA  400

seq1  CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTA  450

seq1  CACAATGGAGTACTACTCAGCTATTAAAAA  479
      ||||||||||||||||||||||||||||||
seq2  CACAATGGAGTACTACTCAGCTATTAAAAA  480

seq1: chr3_67020053_67021127
seq2: B6Ng01-099F10.g_68_1125

seq1  GAATTCTTGGTTTACTGATACTCAGTAAATGAGTAAATTACTGGTAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTTACTGATACTCAGTAAATGAGTAAATTACTGGTAGCAT  50

seq1  ATGTAAATGCTACTGACAGACCACTGAAGTTAAATCCTGATCTGGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGCTACTGACAGACCACTGAAGTTAAATCCTGATCTGGAATTT  100

seq1  AGAGTAGTTTGGAAGCAAAAGAATTGGCTCAGTGGCTAGGACCACTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGTTTGGAAGCAAAAGAATTGGCTCAGTGGCTAGGACCACTTGCT  150

seq1  TTACAGAGGGCCCACAGTTTGGTTCCCAAAACCTTTGTGTTAGCTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGGGCCCACAGTTTGGTTCCCAAAACCTTTGTGTTAGCTCATGA  200

seq1  CGTTTTCTAACTCCAGTGCCACATCTGATATACTCTTCTGGCCCAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCTAACTCCAGTGCCACATCTGATATACTCTTCTGGCCCAGAAAG  250

seq1  GAACAAGGCATGCCCATAGTCAATATACATACATGCAGGGGAAACACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGCATGCCCATAGTCAATATACATACATGCAGGGGAAACACTCA  300

seq1  TACAAAAAATAAAAATGAGTAAATCTTTTAAAAATTTAACAAGTAGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAATAAAAATGAGTAAATCTTTTAAAAATTTAACAAGTAGTTAT  350

seq1  GGATTTCACTTTTTATATGAAACATATGAATGCATATAATAATTTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCACTTTTTATATGAAACATATGAATGCATATAATAATTTCTTCA  400

seq1  TTATTAGTGTTTCCTGTTTAGAGTACTCTTTAACACGGGAGTGTTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGTTTCCTGTTTAGAGTACTCTTTAACACGGGAGTGTTAAAGA  450

seq1  TGCAGCTTACAATAGAACACTTCTGTTTACATTCCTGCATTCATATAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTACAATAGAACACTTCTGTTTACATTCCTGCATTCATATAAGT  500

seq1  GTTCCTATGCCGTCTTCATTATGGAAAGCTTCAGTAATGGATGCTTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATGCCGTCTTCATTATGGAAAGCTTCAGTAATGGATGCTTACTA  550

seq1  TTCAGGGAATACAGGGAAAACAGTTGTTTGCCACAGTAGGCCAATGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGAATACAGGGAAAACAGTTGTTTGCCACAGTAGGCCAATGGATT  600

seq1  GGGTACTTTCTTTGGCTGTGATATCAGAGAGAACTCATAGTTACAACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTTTCTTTGGCTGTGATATCAGAGAGAACTCATAGTTACAACTTC  650

seq1  TCTGTATATAGAGCAACCCATAGTATATTCTAAATCACTGAAAGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATATAGAGCAACCCATAGTATATTCTAAATCACTGAAAGGTTTTT  700

seq1  TTTCCTCCTATAGAAATACTTTTTAATTTAGAATTTATAGCTATATAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTATAGAAATACTTTTTAATTTAGAATTTATAGCTATATAGGT  750

seq1  TCTCATAGAAACAGATGTAAAAAGTGATGGTAGGGAGTGGCGGGAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGAAACAGATGTAAAAAGTGATGGTAGGGAGTGGCGGGAGATGC  800

seq1  AAGTCTGGGAAGCGCCTCCGCGCCTTCTCAGTCTTCCTCTCTAGAGCGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGGAAGCGCCTCCGCGCCTTCTCAGTCTTCCTCTCTAGAGCGGG  850

seq1  AAGGGAAGGGAAGCGCTGCTTGGGTAATCCCGACCTGCAGTTTCCCAACT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGGGAAGGGAAGCGCTGCTTGGGTAATCCCGACCTGCAG-TTCCCAACT  899

seq1  TCCTAACATGGACATGGACATGGAAACATAGGAAATACAGACGTCACTAG  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCT-ACATGGACATGGACATGGAAACATAGGAAATACAGACGTCACTAG  948

seq1  ACCTTGAGAAATTTATACATGCAAAGGCACACAAAACAGCTTTTCTTTCC  1000
      |||||||| ||||||||||||| ||||||||| ||||||| ||||||  |
seq2  ACCTTGAG-AATTTATACATGC-AAGGCACAC-AAACAGC-TTTCTTCGC  994

seq1  TCTTTTATAGTCCCTTAATATATTTAATTCAGTGAGCTGGTATGTCCACC  1050
         ||||||||||||  |||||||||| ||| |||||||  ||| |||||
seq2  ---TTTATAGTCCCT--ATATATTTAA-TCA-TGAGCTG--ATG-CCACC  1034

seq1  TCACAC-CGGGACAGCTATAAATGTG  1075
      || ||| |||||||||||| ||||||
seq2  TC-CACACGGGACAGCTAT-AATGTG  1058