BAC Information

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BAC

Clone NameB6Ng01-099G01
Chromosome6 (Build37)
Map Location 29,814,349 - 29,869,738
singlet/doubletdoublet
Overlap gene4631427C17Rik, D330017J20Rik
Upstream geneSnd1, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Downstream gene1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099G01.bB6Ng01-099G01.g
ACCDH909187DH909188
length1,1611,118
definitionDH909187|Mus musculus domesticus DNA, BAC clone: B6Ng01-099G01, 5' end.DH909188|Mus musculus domesticus DNA, BAC clone: B6Ng01-099G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,814,349 - 29,815,528)(29,868,605 - 29,869,738)
sequence
gaattcttattaggtagagttggttgggaagcatagcttttcagctgggt
aagttgttattacacattatttacatttctgggtttattttccatccata
atgattggaaatgaggaacactgtgtagtattaacctctatgatttttgt
ctaaagatccccatctttaatgagattgagtctcattttattctactaaa
gtaactgttggaaattcatgaactggttgatttaactctggaagccataa
tgtgaaaatgaattgtcaaatagtctagaacattttaagatatgtgtttg
tcatgtcattttaagatcagtactaaataataatgattttaaattttaac
tcaagcccaatcttttctctgcacagccagagccatatacatctgtgctc
ttgaaaccaatgcctaacttcctacccaagcacctcataggcaggatact
ttacaaatactgtatacctggaagaatgagtggtttccacgtaagcctgt
agtgcttgtatatagctcattgattaataatattaactggtctcatcctg
ataagtttgaaccttgtacattgaactatatgaaatcgccatctgtgcta
gctaaatttatgtcagcttgacacaggctagaatcatcaaaggagggaac
cacagttgggaaaatgtcttcataagatcagactgtaggcaagtctgtag
gacatttttttaaattaatgattgatgtgagaagacccagcccattgtgg
gtggggccatccctgagctggttgtcctgagtatctaagaaagaaaactg
agcaaagccatagcagtgcccttttatggcttctatatctccccttggct
ccaggttcctgctgtgattgacttcctttggtgataaaatagtgatttag
aaatgtaagccaataactctttcctcgccagtttgcttttagtcaatgtt
catctcagcatagtgatcctagacaccatcttttatttttaaattatcat
acgtgttgttttatgccctatacatgcaggtacaaatacaggtttgtaat
tccatgatcatgagagcttgcttgtctctactcaggttgttctgtatcac
agggtgtgtcttaacacgtcaacgattgggtctaagtaggggtctaatac
tgtaggttgag
gaattcatttgtaggacattcagttggcatcagtaactattgttggaaaa
tgctcagttttctcacccataaaataggacaatagtaaggttttcttcac
tgggtcactgtaaagactaagagttaagtacaagaaatgcccttatcatg
catatctatctatctatctatctatctatctatctatctatctatctatc
tatctatctatctatatcttgatttgtgccaattgtaattctcttctagc
aaaattttcaggagttctaggaaaagaaaactattttccctaaggatttt
ctttactggaaaacaaagagggaaggaaaagcagatttgggcactgcaaa
gatgacaggggacgtactaacagtcataccctttgccttagaaggtggaa
gtaacactaatttttccagcaaggcttttggaggcaatgagcccagacag
agatgattactgcagttgttcatttccaagcatgaagaatgcagctgcgg
aaagtcaggaggtgaaactccggggagccacactgagctcactggcaaaa
gcaacacactacgagagcctttttcctgcaggggactgagacaggtgggg
attgtgccatgcctctacttcagaaggaagacccagcctatcactctggg
gtcatttatttgcatattgtgtctccccacctttcctggaatgcttgctc
tagaagggcaaagacccttctgccttattcactgatatatcattaacatc
ttgtaacttcattgctagcccctcaaaatatttgatcaagaacaatgttt
cacttcctccgttttgagctgtcctccaacatggcctcaccaccacaata
gtcctctgaaaccatgagccaagattaaacttttccttcatcgaaaaaca
cacccatgtctctcttgaggaaggaggtataaggcacttttaaagaaaat
ccctacaagaaaccctgtctgtacagatggtgactttgggggcagttccc
ctgctcatttactttagactaggagacggggtgagagctatgcagtgtat
atgctagtgtggtctctgtacacaattaccatagaaagatgatcacttgg
gaaactgtgaaatctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29814349_29815528
seq2: B6Ng01-099G01.b_48_1208

seq1  GAATTCTTATTAGGTAGAGTTGGTTGGGAAGCATAGCTTTTCAGCTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTAGGTAGAGTTGGTTGGGAAGCATAGCTTTTCAGCTGGGT  50

seq1  AAGTTGTTATTACACATTATTTACATTTCTGGGTTTATTTTCCATCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTATTACACATTATTTACATTTCTGGGTTTATTTTCCATCCATA  100

seq1  ATGATTGGAAATGAGGAACACTGTGTAGTATTAACCTCTATGATTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGGAAATGAGGAACACTGTGTAGTATTAACCTCTATGATTTTTGT  150

seq1  CTAAAGATCCCCATCTTTAATGAGATTGAGTCTCATTTTATTCTACTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATCCCCATCTTTAATGAGATTGAGTCTCATTTTATTCTACTAAA  200

seq1  GTAACTGTTGGAAATTCATGAACTGGTTGATTTAACTCTGGAAGCCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTTGGAAATTCATGAACTGGTTGATTTAACTCTGGAAGCCATAA  250

seq1  TGTGAAAATGAATTGTCAAATAGTCTAGAACATTTTAAGATATGTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATGAATTGTCAAATAGTCTAGAACATTTTAAGATATGTGTTTG  300

seq1  TCATGTCATTTTAAGATCAGTACTAAATAATAATGATTTTAAATTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCATTTTAAGATCAGTACTAAATAATAATGATTTTAAATTTTAAC  350

seq1  TCAAGCCCAATCTTTTCTCTGCACAGCCAGAGCCATATACATCTGTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCCAATCTTTTCTCTGCACAGCCAGAGCCATATACATCTGTGCTC  400

seq1  TTGAAACCAATGCCTAACTTCCTACCCAAGCACCTCATAGGCAGGATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACCAATGCCTAACTTCCTACCCAAGCACCTCATAGGCAGGATACT  450

seq1  TTACAAATACTGTATACCTGGAAGAATGAGTGGTTTCCACGTAAGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATACTGTATACCTGGAAGAATGAGTGGTTTCCACGTAAGCCTGT  500

seq1  AGTGCTTGTATATAGCTCATTGATTAATAATATTAACTGGTCTCATCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGTATATAGCTCATTGATTAATAATATTAACTGGTCTCATCCTG  550

seq1  ATAAGTTTGAACCTTGTACATTGAACTATATGAAATCGCCATCTGTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTGAACCTTGTACATTGAACTATATGAAATCGCCATCTGTGCTA  600

seq1  GCTAAATTTATGTCAGCTTGACACAGGCTAGAATCATCAAAGGAGGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATTTATGTCAGCTTGACACAGGCTAGAATCATCAAAGGAGGGAAC  650

seq1  CACAGTTGGGAAAATGTCTTCATAAGATCAGACTGTAGGCAAGTCTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGGGAAAATGTCTTCATAAGATCAGACTGTAGGCAAGTCTGTAG  700

seq1  GACATTTTTTTAAATTAATGATTGATGTGAGAAGACCCAGCCCATTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTTTAAATTAATGATTGATGTGAGAAGACCCAGCCCATTGTGG  750

seq1  GTGGGGCCATCCCTGAGCTGGTTGTCCTGAGTATCTAAGAAAGAAAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCATCCCTGAGCTGGTTGTCCTGAGTATCTAAGAAAGAAAACTG  800

seq1  AGCAAAGCCATAGCAGTGCCCTTTTATGGCTTCTATATCTCCCCTTGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCCATAGCAGTGCCCTTTTATGGCTTCTATATCTCCCCTTGGCT  850

seq1  CCAGGTTCCTGCTGTGATTGACTTCCTTTGGTGATAAAATAGTGATTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCCTGCTGTGATTGACTTCCTTTGGTGATAAAATAGTGATTTAG  900

seq1  AAATGTAAGCCAAATAAACTCTTTCCTCGCCAGTTTGCTTTTAGTCAAAT  950
      |||||||||||||   |||||||||||||||||||||||||||||| |||
seq2  AAATGTAAGCCAA--TAACTCTTTCCTCGCCAGTTTGCTTTTAGTC-AAT  947

seq1  GTTTCATCTCAGCAATAGTGATCCTAAGACACCATCTTTATTTTTTAAAA  1000
      | ||||||||||| ||||||||||| ||||||||||||| | |||| |||
seq2  G-TTCATCTCAGC-ATAGTGATCCT-AGACACCATCTTT-TATTTTTAAA  993

seq1  TTATCATACGTGTTTGTTTTATGCCCCTATACATGCAGGTACAAATACAA  1050
      |||||||||||| |||||||||| ||||||||||||||||||||||||| 
seq2  TTATCATACGTG-TTGTTTTATG-CCCTATACATGCAGGTACAAATACAG  1041

seq1  GTTTGT-ATTCCATGATCATGAGAGCCTTGCTTGTCTCTACCTCAGGTGT  1099
      |||||| |||||||||||||||||| |||||||||||||| |||||||  
seq2  GTTTGTAATTCCATGATCATGAGAG-CTTGCTTGTCTCTA-CTCAGGTTG  1089

seq1  GTCTGTATCACAGGTGTGTGTCTTAACACGTCAAACAGTATTTGGGTCAT  1149
       ||||||||||||| |||||||||||||||||||  |    |||||||  
seq2  TTCTGTATCACAGG-GTGTGTCTTAACACGTCAACGA----TTGGGTCTA  1134

seq1  AGTAGGTG-CTAATATTTACTGTAAGGTTGAG  1180
      |||||| | ||||    |||||| ||||||||
seq2  AGTAGGGGTCTAA----TACTGT-AGGTTGAG  1161

seq1: chr6_29868605_29869738
seq2: B6Ng01-099G01.g_66_1183 (reverse)

seq1  AATAGTATTTCACAGTTTCCAAAGTGATCAATCTGTCTATTTGGTTATTT  50
      ||||| |||||||||||||| |||||||| |||| ||||  |||| ||| 
seq2  AATAG-ATTTCACAGTTTCCCAAGTGATC-ATCTTTCTA--TGGTAATT-  45

seq1  GTTGTACAGAGACCAACACTAGCATATACACTGCCATTAAGCTCTCACCC  100
        |||||||||||| |||||||||||||||||| |||  |||||||| ||
seq2  -GTGTACAGAGACC-ACACTAGCATATACACTG-CAT--AGCTCTCA-CC  89

seq1  CCGTCTCCTAGTTCCTAAAAGGTAAATGGAGCAGGGGAAACTGCCCCCAA  150
      ||||||||||||  |||||  |||||| ||||||||| ||||||||||||
seq2  CCGTCTCCTAGT--CTAAA--GTAAAT-GAGCAGGGG-AACTGCCCCCAA  133

seq1  AGTCACCATCTTGTACAGACAGGGTTTCTTTGTAGGGATTTTCTTTTAAA  200
      |||||||||| ||||||||||||||||| |||||||||||||| ||||||
seq2  AGTCACCATC-TGTACAGACAGGGTTTC-TTGTAGGGATTTTC-TTTAAA  180

seq1  AGTGCCTTATACCTCCTTCCTCAAGAGAGACATTGGTGTGTTTTTCGATG  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTGCCTTATACCTCCTTCCTCAAGAGAGACATGGGTGTGTTTTTCGATG  230

seq1  AAGGAAAAGTTTAATCTTGGCTCATGGTTTCAGAGGACTATTGTGGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGTTTAATCTTGGCTCATGGTTTCAGAGGACTATTGTGGTGGT  280

seq1  GAGGCCATGTTGGAGGACAGCTCAAAACGGAGGAAGTGAAACATTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATGTTGGAGGACAGCTCAAAACGGAGGAAGTGAAACATTGTTCT  330

seq1  TGATCAAATATTTTGAGGGGCTAGCAATGAAGTTACAAGATGTTAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAATATTTTGAGGGGCTAGCAATGAAGTTACAAGATGTTAATGAT  380

seq1  ATATCAGTGAATAAGGCAGAAGGGTCTTTGCCCTTCTAGAGCAAGCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTGAATAAGGCAGAAGGGTCTTTGCCCTTCTAGAGCAAGCATTC  430

seq1  CAGGAAAGGTGGGGAGACACAATATGCAAATAAATGACCCCAGAGTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGGTGGGGAGACACAATATGCAAATAAATGACCCCAGAGTGATA  480

seq1  GGCTGGGTCTTCCTTCTGAAGTAGAGGCATGGCACAATCCCCACCTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTCTTCCTTCTGAAGTAGAGGCATGGCACAATCCCCACCTGTCT  530

seq1  CAGTCCCCTGCAGGAAAAAGGCTCTCGTAGTGTGTTGCTTTTGCCAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCCTGCAGGAAAAAGGCTCTCGTAGTGTGTTGCTTTTGCCAGTGA  580

seq1  GCTCAGTGTGGCTCCCCGGAGTTTCACCTCCTGACTTTCCGCAGCTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGTGGCTCCCCGGAGTTTCACCTCCTGACTTTCCGCAGCTGCAT  630

seq1  TCTTCATGCTTGGAAATGAACAACTGCAGTAATCATCTCTGTCTGGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGCTTGGAAATGAACAACTGCAGTAATCATCTCTGTCTGGGCTC  680

seq1  ATTGCCTCCAAAAGCCTTGCTGGAAAAATTAGTGTTACTTCCACCTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTCCAAAAGCCTTGCTGGAAAAATTAGTGTTACTTCCACCTTCTA  730

seq1  AGGCAAAGGGTATGACTGTTAGTACGTCCCCTGTCATCTTTGCAGTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGGGTATGACTGTTAGTACGTCCCCTGTCATCTTTGCAGTGCCC  780

seq1  AAATCTGCTTTTCCTTCCCTCTTTGTTTTCCAGTAAAGAAAATCCTTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCTTTTCCTTCCCTCTTTGTTTTCCAGTAAAGAAAATCCTTAGG  830

seq1  GAAAATAGTTTTCTTTTCCTAGAACTCCTGAAAATTTTGCTAGAAGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGTTTTCTTTTCCTAGAACTCCTGAAAATTTTGCTAGAAGAGAA  880

seq1  TTACAATTGGCACAAATCAAGAT----ATAGATAGATAGATAGATAGATA  946
      |||||||||||||||||||||||    |||||||||||||||||||||||
seq2  TTACAATTGGCACAAATCAAGATATAGATAGATAGATAGATAGATAGATA  930

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATATGCATGATAAGGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATATGCATGATAAGGGC  980

seq1  ATTTCTTGTACTTAACTCTTAGTCTTTACAGTGACCCAGTGAAGAAAACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGTACTTAACTCTTAGTCTTTACAGTGACCCAGTGAAGAAAACC  1030

seq1  TTACTATTGTCCTATTTTATGGGTGAGAAAACTGAGCATTTTCCAACAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTGTCCTATTTTATGGGTGAGAAAACTGAGCATTTTCCAACAAT  1080

seq1  AGTTACTGATGCCAACTGAATGTCCTACAAATGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGATGCCAACTGAATGTCCTACAAATGAATTC  1118