BAC Information

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BAC

Clone NameB6Ng01-099H18
Chromosome6 (Build37)
Map Location 41,396,496 - 41,397,669
singlet/doubletsinglet
Overlap genenone
Upstream geneBC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233
Downstream genePrss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099H18.bB6Ng01-099H18.g
ACCDH909264DH909265
length1,1651,126
definitionDH909264|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H18, 5' end.DH909265|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagctgtcacctgcacccactcccacatgctccaataatttccat
atcttcctatggccttgaggcagcatgccagttttagataatttctcagg
taaagaggaacccatcaaaaatcaatcctttctgaacctcacactaacac
gattgtgaaaaatgaaagtatgtgaaccatctgaaaaacctgacagagat
gacaatatgacagaccttccatttaggaatgatcccaggagcaagtaaat
ggaaaacaccatggaaaaatggcaactctgagcggctgttcagagatgtg
aagctcacatagtcatgccagtaatatgaccatcaagtgtcccatgaggc
ccattttctttttgcagtttcttctgatttccaatttcttcagcctccaa
tcagtttgcctccccaattgccacaattttatctaaacttctctcgttaa
cagacagctccagaaccatcacaatttttcaaggaactcaaagatgatct
catctccaatgcaccttttcctatatctggggccaatggagataaaagca
tcagatagaaatgattctccaattgagtgttataaataggcacaactgac
cctcaggcaggtactgcccttctagatggtttgtgctatattaaaatgga
acctgaaccttagggatgatttaaatgaaaaaaacaaaaagccaggattt
catacaagaagattcaccactgatgaatatccctaatttttccttttttt
acaagtacccgatttttgttcagaagtgagattaaacatgaaactcaaga
agaatgaagactgaagtgtggacactagaatacaggatagttatttttta
ataaaagcacactgatcatattcgatacttcttaagattattatggtata
tgcagtatttagtttgtatcctcttcaaagtactgggctatccatcatgt
aacctgagaatgagagtcaaatatcctataatggatgcagagcttgacct
ttgtattcatttaatttcctcctatacaacaaagcaacgtatttctcttt
cagttttagaacattctctgcatcatgtttgacctcagagactgcttaga
agccataaatataagtcccacaaatttagaactctatacttctacttagc
atcatcgagtttcag
gaattctctttggttggtggcttagtccctgaatactctgaggggtctga
ttagttgatactgttattcttcttatggggttgcaatctttttcagctcc
ttcaactcttccctaacttccctaattgtttcctttagacaggaacaatt
ctgagttaatatttgttagatgggtgtgtggctccatctctcatctgggg
gtcatggctatctattgcaggtggtcttttcaggttctatctccctgctg
ttgggcatttcctcttgtgtcatctccattgggttcttcaagcctctcag
agctatgttgactggatttcctagtggttctctctctccacaccccacaa
tgctgcatatttctagtcattcttctggccccctgggcttctgttctgtc
tgcccccaccccaacctcatcctgctcccttctcttccctttccctctcc
catgcttaacctctcatgtgtatcttcttcccccttttaagtgagattga
agcatccacatttgggcccttccttcttgataaggcttcacaatatccat
gtatcagtgagtacatactgtgaggagcgggtgtggcggcagtctcaaag
gcgccagggactgcagctaagtcgtatgacttgcacctgacttcctcata
taagccacaaacatcctgagagctgcgcaggtgtaccaggataccggtga
atccattttgatggagatatgcccctgctgccctgattagctgaagctgc
gtgcctggtgaggtggcgtagcctgctgtgcgtggatgtgaactgagagt
atataagagtgagaggcccgggttagaggggaggattattattcgagaga
ggattattattattggagatatcaacgagggggagatataaacagggaga
tataaacagggagatataaccagggagattatgagaaagaagaaactgac
tgataaacgtgtggcagaatgatcctgttgcatgtcgttcttctggacag
ttggggcgcgcgcaagaacatactatgtaaatccttatgaaacgggttac
ctactagaatacttaagtctagcattagcctgcaaattctgatggcctgt
tttgaatacctggatatatccattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41396496_41397669
seq2: B6Ng01-099H18.b_48_1212 (reverse)

seq1  CTGAAACCTCGATGATGCTAAGTAAGGAGGTATAGAGTTCCTAAAATTTG  50
      |||||| |||||||||||||||||  || |||||||||||   |||||||
seq2  CTGAAA-CTCGATGATGCTAAGTA--GAAGTATAGAGTTC--TAAATTTG  45

seq1  TGGGCTTTATAATTTTATGCTTTCTAAGCAGTCTCTTGGGGTTCAAACAT  100
      ||||  |||||  ||||||  |||||||||||||||  | | ||||||||
seq2  TGGGACTTATA--TTTATGGCTTCTAAGCAGTCTCT--GAGGTCAAACAT  91

seq1  GGATGGCAGAGAATG-TCTAAAACTGAAAGAGGAAATACGTTGCTTTGTT  149
       ||| |||||||||| ||||||||||||||| ||||||||||||||||||
seq2  -GAT-GCAGAGAATGTTCTAAAACTGAAAGA-GAAATACGTTGCTTTGTT  138

seq1  GTATAGGAGAGAATTAAATGAATACAAAGGTCAAGCTCTGCATCCATTAT  199
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGAGGAAATTAAATGAATACAAAGGTCAAGCTCTGCATCCATTAT  188

seq1  AGGATATTTGACTCTCATTCTCAGGTTACATGATGGATAG-CCAGTAACT  248
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  AGGATATTTGACTCTCATTCTCAGGTTACATGATGGATAGCCCAGT-ACT  237

seq1  TTG-AGAGGATACAAACTAAATACTGCATATACCATAATAATCTTAAGAA  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGGATACAAACTAAATACTGCATATACCATAATAATCTTAAGAA  287

seq1  GTATCGAATATGATCAGTGTGCTTTTATT-AAAAATAACTATCCTGTATT  346
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTATCGAATATGATCAGTGTGCTTTTATTAAAAAATAACTATCCTGTATT  337

seq1  CTAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTTTCATGTTTAATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTTTCATGTTTAATCT  387

seq1  CACTTCTGAACAAAAATCGGGTACTTGTAAAAAAAGGAAAAATTAGGGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGAACAAAAATCGGGTACTTGTAAAAAAAGGAAAAATTAGGGAT  437

seq1  ATTCATCAGTGGTGAATCTTCTTGTATGAAATCCTGGCTTTTTGTTTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGTGGTGAATCTTCTTGTATGAAATCCTGGCTTTTTGTTTTTT  487

seq1  TCATTTAAATCATCCCTAAGGTTCAGGTTCCATTTTAATATAGCACAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAATCATCCCTAAGGTTCAGGTTCCATTTTAATATAGCACAAAC  537

seq1  CATCTAGAAGGGCAGTACCTGCCTGAGGGTCAGTTGTGCCTATTTATAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGAAGGGCAGTACCTGCCTGAGGGTCAGTTGTGCCTATTTATAAC  587

seq1  ACTCAATTGGAGAATCATTTCTATCTGATGCTTTTATCTCCATTGGCCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTGGAGAATCATTTCTATCTGATGCTTTTATCTCCATTGGCCCC  637

seq1  AGATATAGGAAAAGGTGCATTGGAGATGAGATCATCTTTGAGTTCCTTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGGAAAAGGTGCATTGGAGATGAGATCATCTTTGAGTTCCTTGA  687

seq1  AAAATTGTGATGGTTCTGGAGCTGTCTGTTAACGAGAGAAGTTTAGATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTGATGGTTCTGGAGCTGTCTGTTAACGAGAGAAGTTTAGATAA  737

seq1  AATTGTGGCAATTGGGGAGGCAAACTGATTGGAGGCTGAAGAAATTGGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGCAATTGGGGAGGCAAACTGATTGGAGGCTGAAGAAATTGGAA  787

seq1  ATCAGAAGAAACTGCAAAAAGAAAATGGGCCTCATGGGACACTTGATGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGAAACTGCAAAAAGAAAATGGGCCTCATGGGACACTTGATGGT  837

seq1  CATATTACTGGCATGACTATGTGAGCTTCACATCTCTGAACAGCCGCTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTACTGGCATGACTATGTGAGCTTCACATCTCTGAACAGCCGCTCA  887

seq1  GAGTTGCCATTTTTCCATGGTGTTTTCCATTTACTTGCTCCTGGGATCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCATTTTTCCATGGTGTTTTCCATTTACTTGCTCCTGGGATCAT  937

seq1  TCCTAAATGGAAGGTCTGTCATATTGTCATCTCTGTCAGGTTTTTCAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATGGAAGGTCTGTCATATTGTCATCTCTGTCAGGTTTTTCAGAT  987

seq1  GGTTCACATACTTTCATTTTTCACAATCGTGTTAGTGTGAGGTTCAGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACATACTTTCATTTTTCACAATCGTGTTAGTGTGAGGTTCAGAAA  1037

seq1  GGATTGATTTTTGATGGGTTCCTCTTTACCTGAGAAATTATCTAAAACTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGATTTTTGATGGGTTCCTCTTTACCTGAGAAATTATCTAAAACTG  1087

seq1  GCATGCTGCCTCAAGGCCATAGGAAGATATGGAAATTATTGGAGCATGTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTGCCTCAAGGCCATAGGAAGATATGGAAATTATTGGAGCATGTG  1137

seq1  GGAGTGGGTGCAGGTGACAGCTGAATTC  1174
      ||||||||||||||||||||||||||||
seq2  GGAGTGGGTGCAGGTGACAGCTGAATTC  1165