BAC Information

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BAC

Clone NameB6Ng01-099K16
Chromosome6 (Build37)
Map Location 124,666,931 - 124,792,626
singlet/doubletdoublet
Overlap genePhb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2
Upstream geneEG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1
Downstream geneGpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099K16.bB6Ng01-099K16.g
ACCDH909398DH909399
length1,192557
definitionDH909398|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K16, 5' end.DH909399|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,666,931 - 124,668,125)(124,792,064 - 124,792,626)
sequence
gaattctcaataaaatttttattacttaaagccaaaaattttgtgtctga
gtgtgtacgtagattgcgcgaagacattgatcacactgggactcggccag
cagagggcacaagcagtctggcctgtagcattcggactgccgccgggtcc
tcaacaggacctaagctgggagcagccgatctcaggcccaactacacctt
caccccacccgcaggtctaccaaatgaacccacagacttaatgacatctt
tttaaaagctgaagcagctgaggctttgctgagccaaactaaaaacgtga
tgaccccagggggagctgcttccttggtaaccagctcctggttagctccg
ggagatggcgtgttcctcccaagggtttccgtgttcctaagtcccggtgt
gctgttacttagtcaccaggtacgatgagctatttgcactgaagtttctc
cctgtggaggaggccttcccacccccacagcccgggagcccaactgaacc
tattttccacagactacctttcttacgaagaccgagtctccagtactggg
gaaatcaagccattgctcacggacttcgctagaaccgttgccttggtttt
ttccttctgggcagacaagaatacaatagaggaagggtgagcctgactgg
gcgagagggtgcagcagagcttcagctccttgggttcttagaggaagtag
gtctctcctgaagcctaagacagaccaccgaatggaccggaatcgtatcc
cacgttccccatggacattcaggttcccagggtgaaaagacaacggaagc
cagcgtcttgggaccaaatgtgtttccaaatcttgctgctgttctgaagg
cagccattttgtctctttcccattgttcccctttgccaagtgatacacac
acacacacacccatccagaaggttaaaggtcagaggctgttggcctggaa
ggcctagtggtcttcaaggctccaaggtcactgctgaaggaactgacccg
gggccatctttactagaaagtgttaagggcttcatacttcatcatcaaca
ctgcactggaagaatggacccagagcagcaatataaattgatcttaccgc
tgaatcaagcgcctaaaggtagccgctgctggctgcctgaatgtgtccct
cttgtgtgccgtgaacattccaaagccaaggtctgcctctag
tgctttactcttcaccctaaagcatggacataaaggagcagacactgtct
ttgcactcctgcacaatcgagtgttttctcaggggggaaatgcatgcacc
caaggtccttgtctccttccatcccttccggggctgcctcagggccctca
gatttcttctctccagtcttatggagtcaggcaggaaaggtcaggctcta
ggatagggaaccaacaagagaccctccaaaaggctctgcccactttggct
tccatgttcggcagcccccgttttgcctttttccttcctggcttagggcc
agtttctcatttgccctaaactcgtccctgagtgagggagggcagagtaa
gagaatcaggaagcctgatgctgtgttcctgcattctcaggctcaggtcc
gtcctcggtgtgggcgccttgtggccttcagctctggtggtgagaatccc
catggtgtatgggctgtgactcggggacggcgctgtgccctagcactgtg
gcacacgtgggcacctgagcacagtgaacaggtagggaggaagaggtgag
ggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124666931_124668125
seq2: B6Ng01-099K16.b_47_1238

seq1  GAATTCTCAATAAAATTTTTATTACTTAAAGCCAAAAATTTTGTGTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATAAAATTTTTATTACTTAAAGCCAAAAATTTTGTGTCTGA  50

seq1  GTGTGTACGTAGATTGCGCGAAGACATTGATCACACTGGGACTCGGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACGTAGATTGCGCGAAGACATTGATCACACTGGGACTCGGCCAG  100

seq1  CAGAGGGCACAAGCAGTCTGGCCTGTAGCATTCGGACTGCCGCCGGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGCACAAGCAGTCTGGCCTGTAGCATTCGGACTGCCGCCGGGTCC  150

seq1  TCAACAGGACCTAAGCTGGGAGCAGCCGATCTCAGGCCCAACTACACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGACCTAAGCTGGGAGCAGCCGATCTCAGGCCCAACTACACCTT  200

seq1  CACCCCACCCGCAGGTCTACCAAATGAACCCACAGACTTAATGACATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCGCAGGTCTACCAAATGAACCCACAGACTTAATGACATCTT  250

seq1  TTTAAAAGCTGAAGCAGCTGAGGCTTTGCTGAGCCAAACTAAAAACGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGCTGAAGCAGCTGAGGCTTTGCTGAGCCAAACTAAAAACGTGA  300

seq1  TGACCCCAGGGGGAGCTGCTTCCTTGGTAACCAGCTCCTGGTTAGCTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAGGGGGAGCTGCTTCCTTGGTAACCAGCTCCTGGTTAGCTCCG  350

seq1  GGAGATGGCGTGTTCCTCCCAAGGGTTTCCGTGTTCCTAAGTCCCGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGCGTGTTCCTCCCAAGGGTTTCCGTGTTCCTAAGTCCCGGTGT  400

seq1  GCTGTTACTTAGTCACCAGGTACGATGAGCTATTTGCACTGAAGTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTACTTAGTCACCAGGTACGATGAGCTATTTGCACTGAAGTTTCTC  450

seq1  CCTGTGGAGGAGGCCTTCCCACCCCCACAGCCCGGGAGCCCAACTGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGAGGAGGCCTTCCCACCCCCACAGCCCGGGAGCCCAACTGAACC  500

seq1  TATTTTCCACAGACTACCTTTCTTACGAAGACCGAGTCTCCAGTACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCACAGACTACCTTTCTTACGAAGACCGAGTCTCCAGTACTGGG  550

seq1  GAAATCAAGCCATTGCTCACGGACTTCGCTAGAACCGTTGCCTTGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAAGCCATTGCTCACGGACTTCGCTAGAACCGTTGCCTTGGTTTT  600

seq1  TTCCTTCTGGGCAGACAAGAATACAATAGAGGAAGGGTGAGCCTGACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGGGCAGACAAGAATACAATAGAGGAAGGGTGAGCCTGACTGG  650

seq1  GCGAGAGGGTGCAGCAGAGCTTCAGCTCCTTGGGTTCTTAGAGGAAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGGGTGCAGCAGAGCTTCAGCTCCTTGGGTTCTTAGAGGAAGTAG  700

seq1  GTCTCTCCTGAAGCCTAAGACAGACCACCGAATGGACCGGAATCGTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTGAAGCCTAAGACAGACCACCGAATGGACCGGAATCGTATCC  750

seq1  CACGTTCCCCATGGACATTCAGGTTCCCAGGGTGAAAAGACAACGGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCCCCATGGACATTCAGGTTCCCAGGGTGAAAAGACAACGGAAGC  800

seq1  CAGCGTCTTGGGACCAAATGTGTTTCCAAATCTTGCTGCTGTTCTGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCTTGGGACCAAATGTGTTTCCAAATCTTGCTGCTGTTCTGAAGG  850

seq1  CAGCCATTTTGTCTCTTTCCCATTGTTCCCCTTTGCCAAGTGATACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTTTGTCTCTTTCCCATTGTTCCCCTTTGCCAAGTGATACACAC  900

seq1  ACACACACACCCATCCAGAAGGTTAAAGGTCAGAGGCTGTTGGCCTGG-A  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACACACACCCATCCAGAAGGTTAAAGGTCAGAGGCTGTTGGCCTGGAA  950

seq1  GGCCTAGGTGGTCTTCAAGGCTCCAAGGTCACTGCTGAAGGAACTGACCC  999
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTA-GTGGTCTTCAAGGCTCCAAGGTCACTGCTGAAGGAACTGACCC  999

seq1  GGGGGCCATCTTTACCAGACAGTGTTAGGAGCTTCATACTTCAACCATCC  1049
       |||||||||||||| ||| ||||||| | |||||||||||| | ||| |
seq2  -GGGGCCATCTTTACTAGAAAGTGTTAAGGGCTTCATACTTC-ATCAT-C  1046

seq1  AACACTGCACTGGAAG-ATGGACCCAGAGCCAGCCAATATAAATTGATC-  1097
      |||||||||||||||| |||||||||||| ||| ||||||||||||||| 
seq2  AACACTGCACTGGAAGAATGGACCCAGAG-CAG-CAATATAAATTGATCT  1094

seq1  TACCGCTG-ATCAAGCGCTAGAGGGAAGCCGCTGCTGGCTGGCTGACTGT  1146
      |||||||| |||||||||   | || ||||||||||||||| |||| |||
seq2  TACCGCTGAATCAAGCGCCTAAAGGTAGCCGCTGCTGGCTGCCTGAATGT  1144

seq1  G-GCCTCTTGTGTGCGCGTAGACAATCCCAAGGCCAAGGTCTGCTTCTAG  1195
      |  |||||||||||| ||| ||  || |||| |||||||||||| |||||
seq2  GTCCCTCTTGTGTGC-CGT-GAACATTCCAAAGCCAAGGTCTGCCTCTAG  1192

seq1: chr6_124792064_124792626
seq2: B6Ng01-099K16.g_66_628 (reverse)

seq1  CCACCCCCTCACCTCTTCCTCCCTACCTGTTCACTGTGCTCAGGTGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCTCACCTCTTCCTCCCTACCTGTTCACTGTGCTCAGGTGCCCA  50

seq1  CGTGTGCCACAGTGCTAGGGCACAGCGCCGTCCCCGAGTCACAGCCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCCACAGTGCTAGGGCACAGCGCCGTCCCCGAGTCACAGCCCATA  100

seq1  CACCATGGGGATTCTCACCACCAGAGCTGAAGGCCACAAGGCGCCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGGGATTCTCACCACCAGAGCTGAAGGCCACAAGGCGCCCACAC  150

seq1  CGAGGACGGACCTGAGCCTGAGAATGCAGGAACACAGCATCAGGCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGACGGACCTGAGCCTGAGAATGCAGGAACACAGCATCAGGCTTCCT  200

seq1  GATTCTCTTACTCTGCCCTCCCTCACTCAGGGACGAGTTTAGGGCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTTACTCTGCCCTCCCTCACTCAGGGACGAGTTTAGGGCAAATG  250

seq1  AGAAACTGGCCCTAAGCCAGGAAGGAAAAAGGCAAAACGGGGGCTGCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGGCCCTAAGCCAGGAAGGAAAAAGGCAAAACGGGGGCTGCCGA  300

seq1  ACATGGAAGCCAAAGTGGGCAGAGCCTTTTGGAGGGTCTCTTGTTGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAGCCAAAGTGGGCAGAGCCTTTTGGAGGGTCTCTTGTTGGTTC  350

seq1  CCTATCCTAGAGCCTGACCTTTCCTGCCTGACTCCATAAGACTGGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCTAGAGCCTGACCTTTCCTGCCTGACTCCATAAGACTGGAGAGA  400

seq1  AGAAATCTGAGGGCCCTGAGGCAGCCCCGGAAGGGATGGAAGGAGACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGAGGGCCCTGAGGCAGCCCCGGAAGGGATGGAAGGAGACAAG  450

seq1  GACCTTGGGTGCATGCATTTCCCCCCTGAGAAAACACTCGATTGTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGGTGCATGCATTTCCCCCCTGAGAAAACACTCGATTGTGCAGG  500

seq1  AGTGCAAAGACAGTGTCTGCTCCTTTATGTCCATGCTTTAGGGTGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAAGACAGTGTCTGCTCCTTTATGTCCATGCTTTAGGGTGAAGAG  550

seq1  TAAAGCAGAATTC  563
      |||||||||||||
seq2  TAAAGCAGAATTC  563