BAC Information

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BAC

Clone NameB6Ng01-099K17
Chromosome6 (Build37)
Map Location 38,601,136 - 38,735,692
singlet/doubletdoublet
Overlap geneLOC665180, Hipk2
Upstream geneYbx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2
Downstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099K17.bB6Ng01-099K17.g
ACCDH909400DH909401
length1,015933
definitionDH909400|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K17, 5' end.DH909401|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,601,136 - 38,602,155)(38,734,759 - 38,735,692)
sequence
gaattcagatggttacaggaagcttcaaagaaccctaattttttagttaa
aaaaaaaaatcctaaccatttacttttgtagatagagtctcaggtagtac
aggctatgttgtcaaggatggttttaagttcacactcctcctgcccctgt
ctggagtgttgggatcacaagtgtcccaccatgcccatgaagggctgagg
gtcaaactcagtgctttgtgtatgcaaggcaaccagcctaccaacaggtt
cacacatacagcccaaccatgtattagagttcttaaaagcatatatactg
tatattaaattagaaagaaaattgacttaaataacgtatttaccgaaaac
agcctatctacgtacctgttttgtaataagaaagcctgtatttattcccg
tcgttaaaaatacttatcatatcagatttgggttttttcctcagctggtg
cgggtgagcttcctgtcccttgcaggttcctgttaccctctgggagagtc
taatgcatgaggcagctggtcttggcagaatcgttactgagagcatcatt
ttcacccatgagccaatctctctgcaagaaccagcttctccggacctcag
atcgtccctcaggaaatgctaaacacagctcccctgcagactgggctcca
gggtagttaccctttcttctccctctttttctcttactgataattttaaa
atttatttattttatatgtatgggtgttttgcttgtgtgtatgttcgatg
cttgtgcaggtcaaaagaaggcatcaagatccccttgaactgcagctgta
gacatctgtgagccaccgtgtaggtgctgagaactgagcctgggtcttct
ataaagcaacaagtgtcccaaaccccagagccatctccagccctgttgtt
ctgtgaacagcagtctttcccttcttagaagagtatctcaagttgaccac
ttttcttcctcttctcttccctccctgctctctctgccctctcccatcct
cccctcccctcacac
gaattccatgccaggggaagtaaagtaaggcctgcagaatgaccatatat
ccattcctttatctactgtctcggtgccctttttttggtggtgatagggt
agagttgacagggttggcctggaatctacagtccttcttctaagcctcct
aagccctttgtactgtgtaggcagagatgaatagttggccacagaaagga
gttacagcatatacagcctgctgagctgagttgctttttacttttcagac
agtttgctggattccgctgtagaggaataaggcaacgacgacgagtgcag
ctacctccgggcggtgttctaaagcaccagtgcttactcggtgctctgtt
gaccaaggactggcctaattgggaaagttaatatgagagtaattgagtag
aatagagctgtgggaagggtctggacataagaaacctcctataaagatat
tgcagccatcagttgaggtatctttgaacacagaatatcctttaagtcgt
atctgaaacagcctggctcaatgtcccagttcatgtcacccacatcgggg
tccacctgcaagctctttctcacacccttgctttgtccttgtggtctctg
agttaaacagtcaggtttaactcagtgtgttgcttgcttcctggtgacat
tgcctttataactgttcttgggccccaagtgacagtacctgagcccacct
ttgctattcttctcctgccatctgtgtgtaaatgtgtttttttgtctccc
tcccgaaggttccttgaaggctgggactgcgctcacactcctgtgctctc
agggattagcataatgcttttcacatagctggtcctttctgaatgtttga
tgatggtacagccactgagcaggatggatgtgtaggagaaaacataccct
ctcttcgtctataattagtcagaatacatcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38601136_38602155
seq2: B6Ng01-099K17.b_46_1060

seq1  GAATTCAGATGGTTACAGGAAGCTTCAAAGAACCCTAATTTTTTAGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGGTTACAGGAAGCTTCAAAGAACCCTAATTTTTTAGTTAA  50

seq1  AAAAAAAAATCCTAACCATTTACTTTTGTAGATAGAGTCTCAGGTAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCCTAACCATTTACTTTTGTAGATAGAGTCTCAGGTAGTAC  100

seq1  AGGCTATGTTGTCAAGGATGGTTTTAAGTTCACACTCCTCCTGCCCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGTTGTCAAGGATGGTTTTAAGTTCACACTCCTCCTGCCCCTGT  150

seq1  CTGGAGTGTTGGGATCACAAGTGTCCCACCATGCCCATGAAGGGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGTTGGGATCACAAGTGTCCCACCATGCCCATGAAGGGCTGAGG  200

seq1  GTCAAACTCAGTGCTTTGTGTATGCAAGGCAACCAGCCTACCAACAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACTCAGTGCTTTGTGTATGCAAGGCAACCAGCCTACCAACAGGTT  250

seq1  CACACATACAGCCCAACCATGTATTAGAGTTCTTAAAAGCATATATACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACAGCCCAACCATGTATTAGAGTTCTTAAAAGCATATATACTG  300

seq1  TATATTAAATTAGAAAGAAAATTGACTTAAATAACGTATTTACCGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAAATTAGAAAGAAAATTGACTTAAATAACGTATTTACCGAAAAC  350

seq1  AGCCTATCTACGTACCTGTTTTGTAATAAGAAAGCCTGTATTTATTCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATCTACGTACCTGTTTTGTAATAAGAAAGCCTGTATTTATTCCCG  400

seq1  TCGTTAAAAATACTTATCATATCAGATTTGGGTTTTTTCCTCAGCTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAAAAATACTTATCATATCAGATTTGGGTTTTTTCCTCAGCTGGTG  450

seq1  CGGGTGAGCTTCCTGTCCCTTGCAGGTTCCTGTTACCCTCTGGGAGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGAGCTTCCTGTCCCTTGCAGGTTCCTGTTACCCTCTGGGAGAGTC  500

seq1  TAATGCATGAGGCAGCTGGTCTTGGCAGAATCGTTACTGAGAGCATCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATGAGGCAGCTGGTCTTGGCAGAATCGTTACTGAGAGCATCATT  550

seq1  TTCACCCATGAGCCAATCTCTCTGCAAGAACCAGCTTCTCCGGACCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCATGAGCCAATCTCTCTGCAAGAACCAGCTTCTCCGGACCTCAG  600

seq1  ATCGTCCCTCAGGAAATGCTAAACACAGCTCCCCTGCAGACTGGGCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCCCTCAGGAAATGCTAAACACAGCTCCCCTGCAGACTGGGCTCCA  650

seq1  GGGTAGTTACCCTTTCTTCTCCCTCTTTTTCTCTTACTGATAATTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTTACCCTTTCTTCTCCCTCTTTTTCTCTTACTGATAATTTTAAA  700

seq1  ATTTATTTATTTTATATGTATGGGTGTTTTGCTTGTGTGTATGTTCGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTTATATGTATGGGTGTTTTGCTTGTGTGTATGTTCGATG  750

seq1  CTTGTGCAGGTCAAAAGAAGGCATCAAGATCCCCTTGAACTGCAGCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCAGGTCAAAAGAAGGCATCAAGATCCCCTTGAACTGCAGCTGTA  800

seq1  GACATCTGTGAGCCACCGTGTAGGTGCTGAGAACTGAGCCTGGGTCCTCT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GACATCTGTGAGCCACCGTGTAGGTGCTGAGAACTGAGCCTGGGTCTTCT  850

seq1  ATAAAAGCAACAAGTGTCCCAAACCCCAGAGCCATCTCCAGCCCTGTTGT  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AAAGCAACAAGTGTCCCAAACCCCAGAGCCATCTCCAGCCCTGTTGT  899

seq1  TCTGTGAACAGCAGTCTTTCCCTTCTTAGAAGAGTATCTC-AGTTGACCA  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTGTGAACAGCAGTCTTTCCCTTCTTAGAAGAGTATCTCAAGTTGACCA  949

seq1  CTTTTCCTTCCTCTCCTCTCCCCTCCCCTGCTCTCTCCTGCCCTCTCCCA  999
      ||||| |||||||| |||| |||| ||||||||||| |||||||||||||
seq2  CTTTT-CTTCCTCTTCTCTTCCCT-CCCTGCTCTCT-CTGCCCTCTCCCA  996

seq1  TCCTCCCCCTCCCCCTCACAC  1020
      ||||||||   ||||||||||
seq2  TCCTCCCC--TCCCCTCACAC  1015

seq1: chr6_38734759_38735692
seq2: B6Ng01-099K17.g_66_998 (reverse)

seq1  CCTGATGTATTCTGACTAATTTATAGAACGAGAGAGGGTATGTTTTCTCC  50
      | ||||||||||||||||| |||||||   ||||||||||||||||||||
seq2  CATGATGTATTCTGACTAA-TTATAGACGAAGAGAGGGTATGTTTTCTCC  49

seq1  TACACATCCATCCTGCTCAGTGGCTGTACCATCATCAAACATTCAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCCATCCTGCTCAGTGGCTGTACCATCATCAAACATTCAGAAAG  99

seq1  GACCAGCTATGTGAAAAGCATTATGCTAATCCCTGAGAGCACAGGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTATGTGAAAAGCATTATGCTAATCCCTGAGAGCACAGGAGTGT  149

seq1  GAGCGCAGTCCCAGCCTTCAAGGAACCTTCGGGAGGGAGACAAAAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCAGTCCCAGCCTTCAAGGAACCTTCGGGAGGGAGACAAAAAAACA  199

seq1  CATTTACACACAGATGGCAGGAGAAGAATAGCAAAGGTGGGCTCAGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACACACAGATGGCAGGAGAAGAATAGCAAAGGTGGGCTCAGGTAC  249

seq1  TGTCACTTGGGGCCCAAGAACAGTTATAAAGGCAATGTCACCAGGAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGGGGCCCAAGAACAGTTATAAAGGCAATGTCACCAGGAAGCA  299

seq1  AGCAACACACTGAGTTAAACCTGACTGTTTAACTCAGAGACCACAAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACACTGAGTTAAACCTGACTGTTTAACTCAGAGACCACAAGGAC  349

seq1  AAAGCAAGGGTGTGAGAAAGAGCTTGCAGGTGGACCCCGATGTGGGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGGGTGTGAGAAAGAGCTTGCAGGTGGACCCCGATGTGGGTGAC  399

seq1  ATGAACTGGGACATTGAGCCAGGCTGTTTCAGATACGACTTAAAGGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGGGACATTGAGCCAGGCTGTTTCAGATACGACTTAAAGGATAT  449

seq1  TCTGTGTTCAAAGATACCTCAACTGATGGCTGCAATATCTTTATAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTCAAAGATACCTCAACTGATGGCTGCAATATCTTTATAGGAGG  499

seq1  TTTCTTATGTCCAGACCCTTCCCACAGCTCTATTCTACTCAATTACTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATGTCCAGACCCTTCCCACAGCTCTATTCTACTCAATTACTCTC  549

seq1  ATATTAACTTTCCCAATTAGGCCAGTCCTTGGTCAACAGAGCACCGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACTTTCCCAATTAGGCCAGTCCTTGGTCAACAGAGCACCGAGTA  599

seq1  AGCACTGGTGCTTTAGAACACCGCCCGGAGGTAGCTGCACTCGTCGTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGTGCTTTAGAACACCGCCCGGAGGTAGCTGCACTCGTCGTCGT  649

seq1  TGCCTTATTCCTCTACAGCGGAATCCAGCAAACTGTCTGAAAAGTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATTCCTCTACAGCGGAATCCAGCAAACTGTCTGAAAAGTAAAAA  699

seq1  GCAACTCAGCTCAGCAGGCTGTATATGCTGTAACTCCTTTCTGTGGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCAGCTCAGCAGGCTGTATATGCTGTAACTCCTTTCTGTGGCCAA  749

seq1  CTATTCATCTCTGCCTACACAGTACAAAGGGCTTAGGAGGCTTAGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATCTCTGCCTACACAGTACAAAGGGCTTAGGAGGCTTAGAAGAA  799

seq1  GGACTGTAGATTCCAGGCCAACCCTGTCAACTCTACCCTATCACCACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTAGATTCCAGGCCAACCCTGTCAACTCTACCCTATCACCACCAA  849

seq1  AAAAAGGGCACCGAGACAGTAGATAAAGGAATGGATATATGGTCATTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGCACCGAGACAGTAGATAAAGGAATGGATATATGGTCATTCTG  899

seq1  CAGGCCTTACTTTACTTCCCCTGGCATGGAATTC  934
      ||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTACTTTACTTCCCCTGGCATGGAATTC  933