BAC Information

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BAC

Clone NameB6Ng01-099M06
Chromosome6 (Build37)
Map Location 94,454,867 - 94,591,413
singlet/doubletdoublet
Overlap geneSlc25a26, Lrig1
Upstream geneLOC665831, Magi1, LOC100043262, LOC665856
Downstream geneLOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912, Suclg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M06.bB6Ng01-099M06.g
ACCDH909470DH909471
length1,209971
definitionDH909470|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M06, 5' end.DH909471|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,590,198 - 94,591,413)(94,454,867 - 94,455,511)
sequence
gaattctatggatctgaatgtgcagtgtctaccccgagactctggaactc
cacttgttttacctatccatcctgccgccttccctatcgctcttggcaac
tactgataccttactgtttcagtgtttttatcttctcagaatttctcaga
atgttgttcttcagagtgtgtattaggaagccttttcacgtgggcccttt
ttacccagcaatgtacactttccccaggacattctttgttaccgttttat
ttgtgtatctttatataggatacgacaacactctgacaggacttcctcat
gaaccagttctcccctgggcagggtccctctatacccgggcttctcgctc
ttcctaatgctgttcctttaatacagttcctcatgtggggaccctaacca
taaagttatttttgttgctacttcataactgtaattttgccacagtcatg
aatgacaatgtaaatatctgatattcagcatatctgatgtgctcgtgaaa
aggttgttagaatcccaaagaggtgaagatccaaaggttgacagccacga
ctctagacttaaatgatgctgactgctccttggttgtcccctggttcttc
ttcgtaaacctttagtttctagctcagtcctcctaagccgatggtggggg
aaccacgtgggatctgccactgtagccgcgtccttggggccatgcgttca
catgggcatgagacaccaggtccttttttttttcttcccgagagttaatg
gaaactgtctgctgaggaccccaagggggtcagtgatcctgaaggaagtg
agccggctgggagagtggttgacacagcccagtcctgccttaggagggtt
gaccctgcctggcggaggctgtttatcctgccactgggctgctcttgttt
ttatccaatctccacctgaataaacagattcagaacgtcatctgcagcca
ggctgagaatctgccaaattccccagggaacgggtgattcactagcagca
ggggaaagagagagaggcagtggggcagaagacctgctcaccctgattct
cacttcttttcgccagatcatccgggctgggccatctttaaaagacctgg
ggtcctccagcaaggtgtgtcagttcacacattggccggatggttctggt
tttctcttagagttgttataaacagctaatgggggacccgaaacctctga
ttgtcatgc
gaattcttactgtgtagttgaggctggtcctgaattccaggtcccctgac
ttaccctcttcagtgctgagattacaaatatatgctggaatatctctttc
actttttatttactttcactttttattaggattaaaagacctaagataaa
attatattacttcccacctttgtcctctcttcccttcccatgtcccttcc
tgcccatacccctcccccatcaaaatgatggcctcttttgactattattg
ttccatacacatgcttaaatatataaacacaacctgccgaatccctttgt
ggctgtgtgtgtatgatttcagggctgaccgctttgtattcaatagccag
ttgtgggactcatccctgggagagctaagtatcctccctcagtagtcatt
agttgccaagagttttttccctgtgggtggggcccctttagaaatttccc
tctgtgttatcatgtctgttgatgttattgttcaggtcttatttaggcag
ccctattgttgaggtatcatggatgtagcttccctgtcatttctaggaga
cacaatctcaccgcagacttcctagtcctctggctcttacattctctctg
cctcctcctccacaatgttccctgagcctgaggtgctggagtcctgttgt
agatgtatcagctggggccaagcttcccacaacacattgatttctgcata
tgacctgttgttggttaggtttctagtaccagggatgatgttcttcctgt
tgagtggtgtcttaagtccaactagatgggagctggttaccaccaagaca
cacacgagtgccagtcctgcacctttagggctagcttgctctggtagtca
ctgttaaaattcagtgctgccacagctgggtaggactattgatggcttcc
ttttctcagcagcttgcttagtattttctgattctaagggttgggaagaa
tagatggatggtaggggcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94590198_94591413
seq2: B6Ng01-099M06.b_44_1252 (reverse)

seq1  GCATGACAATCAGAGGTCTCGGTGCCCCCACTAGCCTGGTTTATAACCA-  49
      ||||||||||||||||| ||||  |||||| ||||   ||||||||| | 
seq2  GCATGACAATCAGAGGTTTCGGGTCCCCCATTAGC--TGTTTATAACAAC  48

seq1  TCTTCCTAAAGAGAAAACCAGAACCATCTGGCCCATTGTGTGAACTGACA  99
      |||     |||||||||||||||||||| || ||| ||||||||||||||
seq2  TCT-----AAGAGAAAACCAGAACCATCCGG-CCAATGTGTGAACTGACA  92

seq1  -ACC-TGCTTGAAGACACCAGTATCTTTT-AAGATGGCCCAGCCCGGATG  146
       ||| |||| || ||| ||||  |||||| ||||||||||||||||||||
seq2  CACCTTGCTGGAGGACCCCAG-GTCTTTTAAAGATGGCCCAGCCCGGATG  141

seq1  ATCTGGCGGACAGGAAGTGAGAATCAGGGTGAGCAGGTC-TCTTGCCCAC  195
      ||||||| || | |||||||||||||||||||||||||| |||  |||||
seq2  ATCTGGC-GAAAAGAAGTGAGAATCAGGGTGAGCAGGTCTTCTGCCCCAC  190

seq1  TGCCTCTCTCTCTTTCCCCTGCTGCTAGTGAATCACCCGTTCCCTGGGGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCTCTCTTTCCCCTGCTGCTAGTGAATCACCCGTTCCCTGGGGA  240

seq1  ATTTTGGCAGATTCTCAGCCTGGCTGCAGATGACGTTCTGAATCTGTTTA  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTGGCAGATTCTCAGCCTGGCTGCAGATGACGTTCTGAATCTGTTTA  289

seq1  TTCAGGTGGAGATTGGATAAAAAACAAGAGCAGCCCAGTGGCAGGATAAA  345
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCAGGTGGAGATTGGAT-AAAAACAAGAGCAGCCCAGTGGCAGGATAAA  338

seq1  CAGCCTCCGCCAGGCAGGGTCAACCCTCCTAAGGCAGGACTGGGCTGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCGCCAGGCAGGGTCAACCCTCCTAAGGCAGGACTGGGCTGTGT  388

seq1  CAACCACTCTCCCAGCCGGCTCACTTCCTTCAGGATCACTGACCCCCTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACTCTCCCAGCCGGCTCACTTCCTTCAGGATCACTGACCCCCTTG  438

seq1  GGGTCCTCAGCAGACAGTTTCCATTAACTCTCGGGAAGAAAAAAAAAAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTCAGCAGACAGTTTCCATTAACTCTCGGGAAGAAAAAAAAAAGG  488

seq1  ACCTGGTGTCTCATGCCCATGTGAACGCATGGCCCCAAGGACGCGGCTAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGTCTCATGCCCATGTGAACGCATGGCCCCAAGGACGCGGCTAC  538

seq1  AGTGGCAGATCCCACGTGGTTCCCCCACCATCGGCTTAGGAGGACTGAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAGATCCCACGTGGTTCCCCCACCATCGGCTTAGGAGGACTGAGC  588

seq1  TAGAAACTAAAGGTTTACGAAGAAGAACCAGGGGACAACCAAGGAGCAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTAAAGGTTTACGAAGAAGAACCAGGGGACAACCAAGGAGCAGT  638

seq1  CAGCATCATTTAAGTCTAGAGTCGTGGCTGTCAACCTTTGGATCTTCACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCATTTAAGTCTAGAGTCGTGGCTGTCAACCTTTGGATCTTCACC  688

seq1  TCTTTGGGATTCTAACAACCTTTTCACGAGCACATCAGATATGCTGAATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGATTCTAACAACCTTTTCACGAGCACATCAGATATGCTGAATA  738

seq1  TCAGATATTTACATTGTCATTCATGACTGTGGCAAAATTACAGTTATGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATTTACATTGTCATTCATGACTGTGGCAAAATTACAGTTATGAA  788

seq1  GTAGCAACAAAAATAACTTTATGGTTAGGGTCCCCACATGAGGAACTGTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAACAAAAATAACTTTATGGTTAGGGTCCCCACATGAGGAACTGTA  838

seq1  TTAAAGGAACAGCATTAGGAAGAGCGAGAAGCCCGGGTATAGAGGGACCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAACAGCATTAGGAAGAGCGAGAAGCCCGGGTATAGAGGGACCC  888

seq1  TGCCCAGGGGAGAACTGGTTCATGAGGAAGTCCTGTCAGAGTGTTGTCGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGGGAGAACTGGTTCATGAGGAAGTCCTGTCAGAGTGTTGTCGT  938

seq1  ATCCTATATAAAGATACACAAATAAAACGGTAACAAAGAATGTCCTGGGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATATAAAGATACACAAATAAAACGGTAACAAAGAATGTCCTGGGG  988

seq1  AAAGTGTACATTGCTGGGTAAAAAGGGCCCACGTGAAAAGGCTTCCTAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTACATTGCTGGGTAAAAAGGGCCCACGTGAAAAGGCTTCCTAAT  1038

seq1  ACACACTCTGAAGAACAACATTCTGAGAAATTCTGAGAAGATAAAAACAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCTGAAGAACAACATTCTGAGAAATTCTGAGAAGATAAAAACAC  1088

seq1  TGAAACAGTAAGGTATCAGTAGTTGCCAAGAGCGATAGGGAAGGCGGCAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGTAAGGTATCAGTAGTTGCCAAGAGCGATAGGGAAGGCGGCAG  1138

seq1  GATGGATAGGTAAAACAAGTGGAGTTCCAGAGTCTCGGGGTAGACACTGC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATAGGTAAAACAAGTGGAGTTCCAGAGTCTCGGGGTAGACACTGC  1188

seq1  ACATTCAGATCCATAGAATTC  1216
      |||||||||||||||||||||
seq2  ACATTCAGATCCATAGAATTC  1209

seq1: chr6_94454867_94455511
seq2: B6Ng01-099M06.g_67_711

seq1  GAATTCTTACTGTGTAGTTGAGGCTGGTCCTGAATTCCAGGTCCCCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGTGTAGTTGAGGCTGGTCCTGAATTCCAGGTCCCCTGAC  50

seq1  TTACCCTCTTCAGTGCTGAGATTACAAATATATGCTGGAATATCTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCTTCAGTGCTGAGATTACAAATATATGCTGGAATATCTCTTTC  100

seq1  ACTTTTTATTTACTTTCACTTTTTATTAGGATTAAAAGACCTAAGATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTATTTACTTTCACTTTTTATTAGGATTAAAAGACCTAAGATAAA  150

seq1  ATTATATTACTTCCCACCTTTGTCCTCTCTTCCCTTCCCATGTCCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTACTTCCCACCTTTGTCCTCTCTTCCCTTCCCATGTCCCTTCC  200

seq1  TGCCCATACCCCTCCCCCATCAAAATGATGGCCTCTTTTGACTATTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATACCCCTCCCCCATCAAAATGATGGCCTCTTTTGACTATTATTG  250

seq1  TTCCATACACATGCTTAAATATATAAACACAACCTGCCGAATCCCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATACACATGCTTAAATATATAAACACAACCTGCCGAATCCCTTTGT  300

seq1  GGCTGTGTGTGTATGATTTCAGGGCTGACCGCTTTGTATTCAATAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTGTGTATGATTTCAGGGCTGACCGCTTTGTATTCAATAGCCAG  350

seq1  TTGTGGGACTCATCCCTGGGAGAGCTAAGTATCCTCCCTCAGTAGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGACTCATCCCTGGGAGAGCTAAGTATCCTCCCTCAGTAGTCATT  400

seq1  AGTTGCCAAGAGTTTTTTCCCTGTGGGTGGGGCCCCTTTAGAAATTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCAAGAGTTTTTTCCCTGTGGGTGGGGCCCCTTTAGAAATTTCCC  450

seq1  TCTGTGTTATCATGTCTGTTGATGTTATTGTTCAGGTCTTATTTAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTATCATGTCTGTTGATGTTATTGTTCAGGTCTTATTTAGGCAG  500

seq1  CCCTATTGTTGAGGTATCATGGATGTAGCTTCCCTGTCATTTCTAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGTTGAGGTATCATGGATGTAGCTTCCCTGTCATTTCTAGGAGA  550

seq1  CACAATCTCACCGCAGACTTCCTAGTCCTCTGGCTCTTACATTCTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTCACCGCAGACTTCCTAGTCCTCTGGCTCTTACATTCTCTCTG  600

seq1  CCTCCTCCTCCACAATGTTCCCTGAGCCTGAGGTGCTGGAGTCCT  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTCCACAATGTTCCCTGAGCCTGAGGTGCTGGAGTCCT  645