BAC Information

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BAC

Clone NameB6Ng01-100C07
Chromosome6 (Build37)
Map Location 106,292,656 - 106,445,196
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C07.bB6Ng01-100C07.g
ACCDH909728DH909729
length1,1441,097
definitionDH909728|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C07, 5' end.DH909729|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,292,656 - 106,293,796)(106,444,089 - 106,445,196)
sequence
gaattcttttcatcaaaatagatgtgccaaacatttactaaattctccat
actcgtaatgagttgacccttgacaaataatctgcatttgttttgaaaat
atctgtgcaattgttgaaaatttgaagcataaatatatggatcctaaaat
atacaattttaatgcataagcatttaaaacttcatgactgtatgctttta
ttctgttcttttgtcttctttgacggtgcctgtattctgtgattaaattt
ctcattgaagttattttacatatgtaatcaggagaaaagagaatggggac
aaaataatatataatattgttgaaactctacatttttatgcagacatgtg
tgtttatgagcaattatggctctttccccatttacaatcagtctaaaata
ctcgacctactctgtggtcattactttagagcaaactaagacaatgtggg
actatgatttcccagagatcctaaagttagtccttatccaaatcttttta
catcaacatcatatgtggtctccagaagaaatgcaattctattcagtcat
cttgtcccctttattttccttatgtctcaaccctttacctgaagcttcat
tttttgatgtctgagttaaaaataaatgatcctgccagattttacttaat
ctccaaacataacttgagtcaatgttcctctgtcccaatttacatgaaca
agttctgtctggaaccatcacccatcagaaaaaaaaaaaaaaaaaaagaa
aagaaaaaaaaaaggaaaggaaaataaaggaaaggaaaggaaaggaaaga
atgaaataaagaaataaagaaagaaagaaagaaagaaagaaagaaagaaa
aagattttccagactcacaattgcagtttacatactttaagataaccata
ccaaaaggtgaacagactctctgcagcaaggtttgtaatcttcatggcat
caacttatacccagctgtgcttctttggcacagtttgtcaggcaatggca
aataccacgaataaagactttaaatggtttagaagtaatttcaataggac
ttatcctttgggtaactgggaatatttcattcccttaagaacctaggatt
caagagggggaaagaaaggcttgattgcattctctaaaaaacga
gaattcatttagtattgatcataaattcaggggtttttggttgacaattt
gcaattcaataacctacaaggagaaagccagagacaatcactttcaatat
tttaactttatgatagagtataggcattcaaaagagtaaatctcacataa
agacatatatgtagatatttactttcctaacatgtaaataaatacaagga
ttaaagagagaaaagaatttgaaaaccaatacagttatatttgttgttac
ctattctgtggtatttttccacgtagaagtctaattggggaaaacagtta
aaaatatttaactataagtgtgtaaaacacaggcacatcaaacagaacca
ggctgaattacttttgcaaatcaattgtcttggttctattgagcaaaaca
aaatatgtgcaagccaatctctagtcagtttcaaggaagatagacaaaag
gccacactagacaagtactctttaagctcatatgaagtcatgtgagggac
atgcatcaacattcttatggacttccttatttctcaaatgatctttctat
gctgatttttttttttttttggtcatgagtgatttcggggacagtggagg
gtaatgactgaagatataggaactagccatttgggttatcatcaaattct
attatttttctaatatgtgttttacagtcagtcatctgttactttttatg
aaaaatttgggactaatctttgagacctgtacaggaagtgtataatacac
tgggctcattgttattaatgaccagcattaggggctaatattcatcaaca
gaccaatgtactagtacttgtactaactcagatttactttttctaattaa
aatcgtttcctttttcgatacctaagcaataggcacatattgacaaataa
aaacttatattattttcacagcagtcaaaacaatgtagaaaataactgta
aactctgaactacaattccatcatatttgtctattaatttcaattacaca
cacaaataagtatatatgttgaaatcttaataaaaataatatatgataat
aaaatataaaatggatatatcatatagatccgctactttaagaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106292656_106293796
seq2: B6Ng01-100C07.b_45_1188

seq1  GAATTCTTTTCATCAAAATAGATGTGCCAAACATTTACTAAATTCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCATCAAAATAGATGTGCCAAACATTTACTAAATTCTCCAT  50

seq1  ACTCGTAATGAGTTGACCCTTGACAAATAATCTGCATTTGTTTTGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTAATGAGTTGACCCTTGACAAATAATCTGCATTTGTTTTGAAAAT  100

seq1  ATCTGTGCAATTGTTGAAAATTTGAAGCATAAATATATGGATCCTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCAATTGTTGAAAATTTGAAGCATAAATATATGGATCCTAAAAT  150

seq1  ATACAATTTTAATGCATAAGCATTTAAAACTTCATGACTGTATGCTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTTAATGCATAAGCATTTAAAACTTCATGACTGTATGCTTTTA  200

seq1  TTCTGTTCTTTTGTCTTCTTTGACGGTGCCTGTATTCTGTGATTAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTTTTGTCTTCTTTGACGGTGCCTGTATTCTGTGATTAAATTT  250

seq1  CTCATTGAAGTTATTTTACATATGTAATCAGGAGAAAAGAGAATGGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAAGTTATTTTACATATGTAATCAGGAGAAAAGAGAATGGGGAC  300

seq1  AAAATAATATATAATATTGTTGAAACTCTACATTTTTATGCAGACATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATATATAATATTGTTGAAACTCTACATTTTTATGCAGACATGTG  350

seq1  TGTTTATGAGCAATTATGGCTCTTTCCCCATTTACAATCAGTCTAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGAGCAATTATGGCTCTTTCCCCATTTACAATCAGTCTAAAATA  400

seq1  CTCGACCTACTCTGTGGTCATTACTTTAGAGCAAACTAAGACAATGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACCTACTCTGTGGTCATTACTTTAGAGCAAACTAAGACAATGTGGG  450

seq1  ACTATGATTTCCCAGAGATCCTAAAGTTAGTCCTTATCCAAATCTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATTTCCCAGAGATCCTAAAGTTAGTCCTTATCCAAATCTTTTTA  500

seq1  CATCAACATCATATGTGGTCTCCAGAAGAAATGCAATTCTATTCAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACATCATATGTGGTCTCCAGAAGAAATGCAATTCTATTCAGTCAT  550

seq1  CTTGTCCCCTTTATTTTCCTTATGTCTCAACCCTTTACCTGAAGCTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCCTTTATTTTCCTTATGTCTCAACCCTTTACCTGAAGCTTCAT  600

seq1  TTTTTGATGTCTGAGTTAAAAATAAATGATCCTGCCAGATTTTACTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATGTCTGAGTTAAAAATAAATGATCCTGCCAGATTTTACTTAAT  650

seq1  CTCCAAACATAACTTGAGTCAATGTTCCTCTGTCCCAATTTACATGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAACATAACTTGAGTCAATGTTCCTCTGTCCCAATTTACATGAACA  700

seq1  AGTTCTGTCTGGAACCATCACCCATCAG--AAAAAAAAAAAAAAAAAGAA  748
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  AGTTCTGTCTGGAACCATCACCCATCAGAAAAAAAAAAAAAAAAAAAGAA  750

seq1  AAGAAAAAAAAAAGGAAAGGAAAAGAAAGGAAAGGAAAGGAAAGGAAAGA  798
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGAAAAAAAAAAGGAAAGGAAAATAAAGGAAAGGAAAGGAAAGGAAAGA  800

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA---AAA  845
      | |||| ||||||| |||||||||||||||||||||||||||||   |||
seq2  ATGAAATAAAGAAATAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  850

seq1  AAGATTTTCCAGACTCACAATTGCAGTTTACATACTTTAAGATAACCATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCCAGACTCACAATTGCAGTTTACATACTTTAAGATAACCATA  900

seq1  CCAAAAGGTGAAACAGACTCTCTGCAGC-AGGGTTGTAATCTTCATGGCA  944
      |||||||||| ||||||||||||||||| ||| |||||||||||||||||
seq2  CCAAAAGGTG-AACAGACTCTCTGCAGCAAGGTTTGTAATCTTCATGGCA  949

seq1  TCACCTTATAGCCAGCTGTGCTTCTTTGGCACAGTTTGTCAGGCAATGGC  994
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTATACCCAGCTGTGCTTCTTTGGCACAGTTTGTCAGGCAATGGC  999

seq1  AAAATACACGAATTAAAGACTTTAAAATGTTTAGAAGTAATTTCAATAGG  1044
      |||   |||||| |||||||||||||  ||||||||||||||||||||||
seq2  AAATACCACGAA-TAAAGACTTTAAATGGTTTAGAAGTAATTTCAATAGG  1048

seq1  ACATATCCTTATGGATAACTGTG-ATATTTCATTCTCTTAAGAAACTAAT  1093
      || ||||||| ||| |||||| | ||||||||||| |||||||| || | 
seq2  ACTTATCCTT-TGGGTAACTGGGAATATTTCATTCCCTTAAGAACCT-AG  1096

seq1  GATTCAAAGAGGGGGAAAGAAAGGCTTGAATGCATTC-ATAGAAAACGA  1141
      ||||| ||||||||||||||||||||||| |||||||  || |||||||
seq2  GATTC-AAGAGGGGGAAAGAAAGGCTTGATTGCATTCTCTAAAAAACGA  1144

seq1: chr6_106444089_106445196
seq2: B6Ng01-100C07.g_71_1167 (reverse)

seq1  TTGTTCTATAAGTAGCCTGATACCTATATGATATATACATATTATATATT  50
      |||||||  |||||| | |||  ||||||||||||| ||| |||||| ||
seq2  TTGTTCTTAAAGTAG-CGGAT--CTATATGATATATCCATTTTATATTTT  47

seq1  ATATATACATAATATATATTATATATAAGATATACAACATATATAACTTA  100
      || ||| ||| |||| |||| |   |||||| | |||||||||| |||||
seq2  AT-TAT-CAT-ATAT-TATTTTTATTAAGAT-TTCAACATATAT-ACTTA  91

seq1  TATGTGTGTGTAATTGAAATTTAATAGACAAATATGATGGAATTGTAGTT  150
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTAATTGAAA-TTAATAGACAAATATGATGGAATTGTAGTT  140

seq1  CAGAGTTTACAGTTATTTTCTACATTGTTTTGACCTGCTGTGAAAATAAT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGAGTTTACAGTTATTTTCTACATTGTTTTGA-CTGCTGTGAAAATAAT  189

seq1  ATAAGTTTTTATTTGTCAATATGTGCCTATTGCTTAGGTATCGAAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTTTATTTGTCAATATGTGCCTATTGCTTAGGTATCGAAAAAGG  239

seq1  AAACGATTTTAATTAGGAAAAGTAAATCTGAGTTAGTACAAGTACTAGTA  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAACGATTTTAATTAGAAAAAGTAAATCTGAGTTAGTACAAGTACTAGTA  289

seq1  CATTGGTCTGTTGATGAATATTAGCCCCTAATGCTGGTCATTAATAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTCTGTTGATGAATATTAGCCCCTAATGCTGGTCATTAATAACAA  339

seq1  TGAGCCCAGTGTATTATACACTTCCTGTACAGGTCTCAAAGATTAGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGTGTATTATACACTTCCTGTACAGGTCTCAAAGATTAGTCCC  389

seq1  AAATTTTTCATAAAAAGTAACAGATGACTGACTGTAAAACACATATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCATAAAAAGTAACAGATGACTGACTGTAAAACACATATTAGA  439

seq1  AAAATAATAGAATTTGATGATAACCCAAATGGCTAGTTCCTATATCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAGAATTTGATGATAACCCAAATGGCTAGTTCCTATATCTTCA  489

seq1  GTCATTACCCTCCACTGTCCCCGAAATCACTCATGACCAAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTACCCTCCACTGTCCCCGAAATCACTCATGACCAAAAAAAAAAAA  539

seq1  AAATCAGCATAGAAAGATCATTTGAGAAATAAGGAAGTCCATAAGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCATAGAAAGATCATTTGAGAAATAAGGAAGTCCATAAGAATGT  589

seq1  TGATGCATGTCCCTCACATGACTTCATATGAGCTTAAAGAGTACTTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCATGTCCCTCACATGACTTCATATGAGCTTAAAGAGTACTTGTCT  639

seq1  AGTGTGGCCTTTTGTCTATCTTCCTTGAAACTGACTAGAGATTGGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCCTTTTGTCTATCTTCCTTGAAACTGACTAGAGATTGGCTTGC  689

seq1  ACATATTTTGTTTTGCTCAATAGAACCAAGACAATTGATTTGCAAAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTGTTTTGCTCAATAGAACCAAGACAATTGATTTGCAAAAGTA  739

seq1  ATTCAGCCTGGTTCTGTTTGATGTGCCTGTGTTTTACACACTTATAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCCTGGTTCTGTTTGATGTGCCTGTGTTTTACACACTTATAGTTA  789

seq1  AATATTTTTAACTGTTTTCCCCAATTAGACTTCTACGTGGAAAAATACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTAACTGTTTTCCCCAATTAGACTTCTACGTGGAAAAATACCA  839

seq1  CAGAATAGGTAACAACAAATATAACTGTATTGGTTTTCAAATTCTTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGGTAACAACAAATATAACTGTATTGGTTTTCAAATTCTTTTCT  889

seq1  CTCTTTAATCCTTGTATTTATTTACATGTTAGGAAAGTAAATATCTACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAATCCTTGTATTTATTTACATGTTAGGAAAGTAAATATCTACAT  939

seq1  ATATGTCTTTATGTGAGATTTACTCTTTTGAATGCCTATACTCTATCATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTTTATGTGAGATTTACTCTTTTGAATGCCTATACTCTATCATA  989

seq1  AAGTTAAAATATTGAAAGTGATTGTCTCTGGCTTTCTCCTTGTAGGTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAATATTGAAAGTGATTGTCTCTGGCTTTCTCCTTGTAGGTTAT  1039

seq1  TGAATTGCAAATTGTCAACCAAAAACCCCTGAATTTATGATCAATACTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCAAATTGTCAACCAAAAACCCCTGAATTTATGATCAATACTAA  1089

seq1  ATGAATTC  1108
      ||||||||
seq2  ATGAATTC  1097