BAC Information

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BAC

Clone NameB6Ng01-100D07
Chromosome6 (Build37)
Map Location 87,783,858 - 87,785,045
singlet/doubletsinglet
Overlap geneIsy1
Upstream gene2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43
Downstream geneCnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100D07.bB6Ng01-100D07.g
ACCDH909770DH909771
length1,1751,254
definitionDH909770|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D07, 5' end.DH909771|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggccagccaagatacaaagtgagactatgtcttaaaaaacag
cactgggcagtggtagtgcacacttgggaggcagaggcaagcaatttctg
tgagttcgaggtcagcctggtttacagagagttctaggacagccaaggct
acacagagaaaccctgtctcaaaaaaccaaaacagccggcatggtggcgc
acgcctttaatcccagcactcagcaggcagaggcaggcggatttctgagt
tcgaggccagcctagtctacaaagtgagttccaggacagccagggctgta
cagagaaaccctgtctcgaaaaaaacaaaaacaaaaacaaacaaaaacaa
aaaccaacaataacaaaaaacaaaacagcttttaatcctagaactaggga
ggcagaggcaggcagatctgtgaattagagactagcctggtatacacagc
tattagccaggaatacaaaaagagacccagtctcaaaaaaaaaaaaaaat
ttggttaataatcattgatgaggtaaaaagaagcaagcagagccattatt
tctactgaacatacctgccgtctccacttctccgctttcggcaactcagt
acattcagaagcaaggaagggtctccgttcctaaggagggtgagagtaac
acacatggtaactgggctctgtacacacctatgtgacatccacaaccgat
tcagccttgaaaccttaaatatttaatgctctaaatatacttgaagtcac
agtgctagaggatattcaattcctaaccatcactgtacaatctcttagga
agctatataattaggatatataattactccaggaactgtgtatagttaaa
ataaatatatacaaatatttaatctctccaggtccactctctaccttctt
ctagtcaatattaaagctggaataataagggcaagcgggaggcagataat
cacatgccaacagaaaagaggctaagcagacgcacaagtgtacaaactct
tcagcaaacacagcagaagagctgcggctcgaagcctgcatctgctcctg
gtacttcccaggagtgcttccctcacctgacttttccttttccagctgag
cttgacgaacctccgcaaggcaatctgcagcaccaaaagaaccccattag
atcctagacttcagtctggatgggg
gaattcactcctagtcactcccattctcagggtgtaatagtggggtgatg
ggcaagcaacgaattgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcaggatcttcct
gagaagcaagcaataaagcttttgccacggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaataaggtgcaagtcataagactta
gctgcagtccctggcgccttcttgggactgctgccacacccgctcctcac
atctcccccttttttcttttttggcagagagaatgtctgtcttagattgc
cccttgggagacaaacagcattggtttgatccctgtcttaggttggtgac
acgcccagggagtcttatctgtcactgactacttctctagcatgccacac
atggggagattgtcctgtctgtatgcggcaggtgcaccagaaggccagga
tgctgattaatctatggcccgattttgattgctgcaagcaagcctcatgg
gtgaaggtagaggtctgattccccagtgtgcaagcataggggccctacac
aaaaccatcccttgggctcatcacccagagaggtcttggccagctcctgt
gtcgtttttcctggggcaagggaactaggacactgaaccttcatgcaatc
agacgtgccttccacaggatgccaacagcaagctatcctctgtgcagtgc
ttagcctcacaacccacagcataacgcagcattatttctttagagcggca
agccaaatctgaggagattgtcctgcctccactgcagcaaaggcctgcgc
taccattgtgaaagtgtgggcctgcacacgctgcacctgatacatgcgcc
aaacacacaatacacacactattacaagcatacatccagggctccatcag
ccctgagcagggatcttataaacattaacacaaaagaggtcacctacaac
aggcgtagctgaaagaaacatccctcctctagcaattgaaatacagagtt
tcaacaacattaaaaacattccaataaatttgcaattacttcaggcccct
tcttgcaccctggcttagggggaagataccgtgcactcctattcccccat
taaacatagaattaggtcttgcagtggaaggaatcggaacctctccaagg
aagtgccattaggtgagatagtgctgtgctggagtatctgcggtgcgacc
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87783858_87785045
seq2: B6Ng01-100D07.b_48_1222

seq1  GAATTCCAGGCCAGCCAAGATACAAAGTGAGACTATGTCTTAAAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCAAGATACAAAGTGAGACTATGTCTTAAAAAACAG  50

seq1  CACTGGGCAGTGGTAGTGCACACTTGGGAGGCAGAGGCAAGCAATTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCAGTGGTAGTGCACACTTGGGAGGCAGAGGCAAGCAATTTCTG  100

seq1  TGAGTTCGAGGTCAGCCTGGTTTACAGAGAGTTCTAGGACAGCCAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGGTCAGCCTGGTTTACAGAGAGTTCTAGGACAGCCAAGGCT  150

seq1  ACACAGAGAAACCCTGTCTCAAAAAACCAAAACAGCCGGCATGGTGGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTCTCAAAAAACCAAAACAGCCGGCATGGTGGCGC  200

seq1  ACGCCTTTAATCCCAGCACTCAGCAGGCAGAGGCAGGCGGATTTCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTCAGCAGGCAGAGGCAGGCGGATTTCTGAGT  250

seq1  TCGAGGCCAGCCTAGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTAGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTA  300

seq1  CAGAGAAACCCTGTCTCGAAAAAAACAAAAACAAAAACAAACAAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAAAACAAAAACAAAAACAAACAAAAACAA  350

seq1  AAACCAACAATAACAAAAAACAAAACAGCTTTTAATCCTAGAACTAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACAATAACAAAAAACAAAACAGCTTTTAATCCTAGAACTAGGGA  400

seq1  GGCAGAGGCAGGCAGATCTGTGAATTAGAGACTAGCCTGGTATACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCAGATCTGTGAATTAGAGACTAGCCTGGTATACACAGC  450

seq1  TATTAGCCAGGAATACAAAAAGAGACCCAGTCTCAAAAAAAAAAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCAGGAATACAAAAAGAGACCCAGTCTCAAAAAAAAAAAAAAAT  500

seq1  TTGGTTAATAATCATTGATGAGGTAAAAAGAAGCAAGCAGAGCCATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAATAATCATTGATGAGGTAAAAAGAAGCAAGCAGAGCCATTATT  550

seq1  TCTACTGAACATACCTGCCGTCTCCACTTCTCCGCTTTCGGCAACTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAACATACCTGCCGTCTCCACTTCTCCGCTTTCGGCAACTCAGT  600

seq1  ACATTCAGAAGCAAGGAAGGGTCTCCGTTCCTAAGGAGGGTGAGAGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGAAGCAAGGAAGGGTCTCCGTTCCTAAGGAGGGTGAGAGTAAC  650

seq1  ACACATGGTAACTGGGCTCTGTACACACCTATGTGACATCCACAACCGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTAACTGGGCTCTGTACACACCTATGTGACATCCACAACCGAT  700

seq1  TCAGCCTTGAAACCTTAAATATTTAATGCTCTAAATATACTTGAAGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTGAAACCTTAAATATTTAATGCTCTAAATATACTTGAAGTCAC  750

seq1  AGTGCTAGAGGATATTCAATTCCTAACCATCACTGTACAATCTCTTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAGGATATTCAATTCCTAACCATCACTGTACAATCTCTTAGGA  800

seq1  AGCTATATAATTAGGATATATAATTACTCCAGGAACTGTGTATAGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATAATTAGGATATATAATTACTCCAGGAACTGTGTATAGTTAAA  850

seq1  ATAAATATATACAAATATTTAATCTCTCCAGGTCCACTCTCTACCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATACAAATATTTAATCTCTCCAGGTCCACTCTCTACCTTCTT  900

seq1  CTAGTCAATATTAAAGCTGGAATAATAAGGGGCAAGCGGGAGGCAGATAA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAGTCAATATTAAAGCTGGAATAATAA-GGGCAAGCGGGAGGCAGATAA  949

seq1  TCACATGCCAACAGAAAAGAGGCTAAGCAGACGCACAAGTGTACAAACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGCCAACAGAAAAGAGGCTAAGCAGACGCACAAGTGTACAAACTC  999

seq1  TTCAGCAAACACAGCAGGAAGAGCTGCGGCTCGAAGCCTGCATCTGCTCC  1050
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCAGCAAACACAGCA-GAAGAGCTGCGGCTCGAAGCCTGCATCTGCTCC  1048

seq1  TGGTACTTCCCAGGGAGTGCTTCACTCACCTTGACTTTTCCCTCTTCCAG  1100
      |||||||||||| |||||||||| |||||| |||||||| ||| ||||||
seq2  TGGTACTTCCCA-GGAGTGCTTCCCTCACC-TGACTTTT-CCTTTTCCAG  1095

seq1  CTGAGCTTGACGAAACCTCGCCAGGGCAGTCCTGCAGGCACACAAAAG-A  1149
      |||||||||||| ||||||  || |||| | ||||| |||| |||||| |
seq2  CTGAGCTTGACG-AACCTCCGCAAGGCAAT-CTGCA-GCAC-CAAAAGAA  1141

seq1  CCCCATTAGATTTCTTAGCACTCAAGTTCCTGGATGGGG  1188
      ||||||||||  || ||| |||  |||  ||||||||||
seq2  CCCCATTAGA--TCCTAG-ACTTCAGT--CTGGATGGGG  1175