BAC Information

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BAC

Clone NameB6Ng01-100D08
Chromosome6 (Build37)
Map Location 74,524,426 - 74,660,373
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100D08.bB6Ng01-100D08.g
ACCDH909772DH909773
length1,1441,151
definitionDH909772|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D08, 5' end.DH909773|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,524,426 - 74,525,577)(74,659,216 - 74,660,373)
sequence
gaattctttacaaaacaaatgcatataatctttagatggtatgaagaaca
cgctagctggaaccctttcatgggtgtctggaaacagcagctgccagtaa
gtttctctttggaaccacctaaaataacaaaccctctgatacagagaaga
aatatcactgctatgtatgccattgtccagtaacttcagggtgagttctc
aaggccattttcagtaaaacctactccctacatcaatgtataactttgat
agagaataaattgtgatgtacagtttaaaacgcagcaagaaactcctatt
ttcctgatcaagaatagaatgtaaaattatcaaagaatccctgcctttat
ctccttcaataacagttacttgtcattttctcagatcgtgtgcagaacac
tagcattctaaacacatttttcacattctaaaattttcaaaattttttcc
aacatacgcagaagtagatacgatggcatactctaatcattaatatgggt
tgtcaaattaacaagatatagaaacacctagaaaaaatcacacctcctgg
tgtaactgagagtttctagactagattagctgagctataaaggctgtgca
tgtggttggtggcattccatgctttgggcttctacactaaataaaaagaa
tcaagcacggggaaaatgttatttattttatttattagctgtaaatgtgt
acaaagggtaacttcagcttactcttgctccttacaccaagtcttcaaag
ctatagctgaatatagcttctagctgtcgatcaaaataaactattccttt
ctatgtcaagttttgaatatagtgattaaagaaataagaaatatacaaag
tcttatcccttttgttttcctctcagctttaacattttttaaaattaaat
tagtttatttatttacatacaatggccaccactgcccgacactatatttt
ttttagactcttaggagacccaaacaactatataccagccttgcacttaa
cacatcaaaccagaatatattttctatttgcctctgctattctatgctct
gttcttaacatcttggaagtaatattatcagtcttgatccaggctcttct
cagcaaaccgtatttccaatattgtcagaaatgtaaaattcttt
gaattccaggaagactgacattaccgtgtatactgtatcttttttatgat
gtatgagaacacagacaaagttatcaagctaaagcatttcctactataca
aaaatctttaatgccagcaaagattgcaacagttttaacaaaggcaactg
tggttgatgacttagaagttggtctctattttagagataattttattgtt
gaataatgtgaagtagttggcacagatgtgttgacagtaaataaaggagg
aaatgggaagtagagacaagcaaaatcctgaaactcatttggtaatggag
gtaggggtgactggtgagtaatctaattaagaaactaatcattgttgcaa
gtataaagttcccagttctctgaaagaaacatgaggtggttttcttggct
agatctatgaccaagtgccatgtctctgtctcacactgatagggaatata
aatccaccatcaaagtgctgaaagaactactttacagcctccatccttgc
ttgaggatgtatggtttccctcttcacacaatctgcacaagtacttctct
tgtatcttggtgtttttctaacattcttgtaatataacagccaagtcaga
tcaggaccaaatcaacagagtcatattatcttattcacttcgttaaagga
cacttctgtatgcactttgatatgcctaggcatttgaattagacatttta
tggtagatataattcagtcttcaatattaaataatataacaaaatgatat
ttatgtaaagtcattctaaaacacatattttgtgtcacaaaatacttgga
atagtgatttctgtgtaattgtcctgacaaatgtatatctatatctagag
actgtgaatctggattggaaaaaaatgccatagcatctaagccataagat
tactgatgtgaatctcatgtaaggacagaccctgttaaatagcattatga
agcacatggtagaaaatttcaaatctgagataaaatttaagcaaaggact
ttcaagtctaaaagaaagataaattttaccatacattaccggtgaggagt
ctattatttttctgaaggtgtctcacttattgtaataagtacagtctgaa
tctgtggagattggtggacagtgcctaggattctctccacttaaaattgg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_74524426_74525577
seq2: B6Ng01-100D08.b_45_1188

seq1  GAATTCTTTACAAAACAAATGCATATAATCTTTAGATGGTATGAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAAAACAAATGCATATAATCTTTAGATGGTATGAAGAACA  50

seq1  CGCTAGCTGGAACCCTTTCATGGGTGTCTGGAAACAGCAGCTGCCAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGCTGGAACCCTTTCATGGGTGTCTGGAAACAGCAGCTGCCAGTAA  100

seq1  GTTTCTCTTTGGAACCACCTAAAATAACAAACCCTCTGATACAGAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTTGGAACCACCTAAAATAACAAACCCTCTGATACAGAGAAGA  150

seq1  AATATCACTGCTATGTATGCCATTGTCCAGTAACTTCAGGGTGAGTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACTGCTATGTATGCCATTGTCCAGTAACTTCAGGGTGAGTTCTC  200

seq1  AAGGCCATTTTCAGTAAAACCTACTCCCTACATCAATGTATAACTTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATTTTCAGTAAAACCTACTCCCTACATCAATGTATAACTTTGAT  250

seq1  AGAGAATAAATTGTGATGTACAGTTTAAAACGCAGCAAGAAACTCCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAAATTGTGATGTACAGTTTAAAACGCAGCAAGAAACTCCTATT  300

seq1  TTCCTGATCAAGAATAGAATGTAAAATTATCAAAGAATCCCTGCCTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATCAAGAATAGAATGTAAAATTATCAAAGAATCCCTGCCTTTAT  350

seq1  CTCCTTCAATAACAGTTACTTGTCATTTTCTCAGATCGTGTGCAGAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAATAACAGTTACTTGTCATTTTCTCAGATCGTGTGCAGAACAC  400

seq1  TAGCATTCTAAACACATTTTTCACATTCTAAAATTTTCAAAATTTTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCTAAACACATTTTTCACATTCTAAAATTTTCAAAATTTTTTCC  450

seq1  AACATACGCAGAAGTAGATACGATGGCATACTCTAATCATTAATATGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACGCAGAAGTAGATACGATGGCATACTCTAATCATTAATATGGGT  500

seq1  TGTCAAATTAACAAGATATAGAAACACCTAGAAAAAATCACACCTCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATTAACAAGATATAGAAACACCTAGAAAAAATCACACCTCCTGG  550

seq1  TGTAACTGAGAGTTTCTAGACTAGATTAGCTGAGCTATAAAGGCTGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGAGAGTTTCTAGACTAGATTAGCTGAGCTATAAAGGCTGTGCA  600

seq1  TGTGGTTGGTGGCATTCCATGCTTTGGGCTTCTACACTAAATAAAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGGTGGCATTCCATGCTTTGGGCTTCTACACTAAATAAAAAGAA  650

seq1  TCAAGCACGGGGAAAATGTTATTTATTTTATTTATTAGCTGTAAATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACGGGGAAAATGTTATTTATTTTATTTATTAGCTGTAAATGTGT  700

seq1  ACAAAGGGTAACTTCAGCTTACTCTTGCTCCTTACACCAAGTCTTCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGTAACTTCAGCTTACTCTTGCTCCTTACACCAAGTCTTCAAAG  750

seq1  CTATAGCTGAATATAGCTTCTAGCTGTCGATCAAAATAAACTATTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTGAATATAGCTTCTAGCTGTCGATCAAAATAAACTATTCCTTT  800

seq1  CTATGTCAAGTTTTGAATATAGTGATTAAAGAAATAAGAAATATAC-AAG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTATGTCAAGTTTTGAATATAGTGATTAAAGAAATAAGAAATATACAAAG  850

seq1  TCTTATCCCTTTTGTTTTCCTCTCAGCTTTAACATTTTTTAAAATTAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCCCTTTTGTTTTCCTCTCAGCTTTAACATTTTTTAAAATTAAAT  900

seq1  TAGTTTATTTATTTACATACAATGGCCACCACTGCCCGACACTATATTTT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGTTTATTTATTTACATACAATGGCCACCACTGCCCGACACTATA-TTT  949

seq1  TTTTTAGACCTCTTAGGAGACCCAAACAACTATATACCAGCCTTGCACTT  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGA-CTCTTAGGAGACCCAAACAACTATATACCAGCCTTGCACTT  998

seq1  AACACATCAAACCAGAATTATATTTTCTATTTGCCTCTGCTATTCTATGC  1049
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACACATCAAACCAGAA-TATATTTTCTATTTGCCTCTGCTATTCTATGC  1047

seq1  TCTGTTCCTAACATCCTTGGAGGTAATATTATCAGTCTTGATTCTAGCCT  1099
      ||||||| |||||| |||||| ||||||||||||||||||| || || ||
seq2  TCTGTTCTTAACAT-CTTGGAAGTAATATTATCAGTCTTGA-TCCAGGCT  1095

seq1  TCTCTCCAGCAAAACCAGTATTGTCCAATATTGTCAGAAATGTAAAATTC  1149
        ||| |||||||  | ||||| |||||||||||||||||||||||||||
seq2  CTTCT-CAGCAAA--CCGTATT-TCCAATATTGTCAGAAATGTAAAATTC  1141

seq1  TTT  1152
      |||
seq2  TTT  1144

seq1: chr6_74659216_74660373
seq2: B6Ng01-100D08.g_68_1218 (reverse)

seq1  TCCATATTTAAAGTGG-TAGAATCCTTATGCCACTGTCCCACCATATCCA  49
      |||| |||| ||||||  ||||||||   | ||||||||  | || ||||
seq2  TCCA-ATTTTAAGTGGAGAGAATCCT--AGGCACTGTCCACCAATCTCCA  47

seq1  CAGATTCAGACTATTACCTATTTACAATAAGTGAGACACC-TCAG-AAAA  97
      ||||||||||||  ||| || ||||||||||||||||||| |||| ||||
seq2  CAGATTCAGACT-GTACTTA-TTACAATAAGTGAGACACCTTCAGAAAAA  95

seq1  TATAAGACTCTTCCACCGTTAATGTATGGTAAAATTTATCTTTCTTTTTA  147
      ||  |||||| | ||||| ||||||||||||||||||||||||| |||||
seq2  TAATAGACTCCT-CACCGGTAATGTATGGTAAAATTTATCTTTC-TTTTA  143

seq1  GACCTTGAAGGTCCTTTGCTTAAATTTTATCCTCAGATTTGAAATTTTCT  197
      || |||||| |||||||||||||||||||| |||||||||||||||||||
seq2  GA-CTTGAAAGTCCTTTGCTTAAATTTTAT-CTCAGATTTGAAATTTTCT  191

seq1  ACCATGTGCTTCATAATGCTATTTAACAGGGTTCTGTCCTTACATGAGAT  247
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCATGTGCTTCATAATGCTATTTAACAGGG-TCTGTCCTTACATGAGAT  240

seq1  TCACATCAGTAATCTTATGGCTTAGATGCTATGGCATTTTTTTCCAATCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCAGTAATCTTATGGCTTAGATGCTATGGCATTTTTTTCCAATCC  290

seq1  AGATTCACAGTCTCTAGATATAGATATACATTTGTCAGGACAATTACACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACAGTCTCTAGATATAGATATACATTTGTCAGGACAATTACACA  340

seq1  GAAATCACTATTCCAAGTATTTTGTGACACAAAATATGTGTTTTAGAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCACTATTCCAAGTATTTTGTGACACAAAATATGTGTTTTAGAATG  390

seq1  ACTTTACATAAATATCATTTTGTTATATTATTTAATATTGAAGACTGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATAAATATCATTTTGTTATATTATTTAATATTGAAGACTGAAT  440

seq1  TATATCTACCATAAAATGTCTAATTCAAATGCCTAGGCATATCAAAGTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTACCATAAAATGTCTAATTCAAATGCCTAGGCATATCAAAGTGC  490

seq1  ATACAGAAGTGTCCTTTAACGAAGTGAATAAGATAATATGACTCTGTTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAGTGTCCTTTAACGAAGTGAATAAGATAATATGACTCTGTTGA  540

seq1  TTTGGTCCTGATCTGACTTGGCTGTTATATTACAAGAATGTTAGAAAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCCTGATCTGACTTGGCTGTTATATTACAAGAATGTTAGAAAAAC  590

seq1  ACCAAGATACAAGAGAAGTACTTGTGCAGATTGTGTGAAGAGGGAAACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATACAAGAGAAGTACTTGTGCAGATTGTGTGAAGAGGGAAACCA  640

seq1  TACATCCTCAAGCAAGGATGGAGGCTGTAAAGTAGTTCTTTCAGCACTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTCAAGCAAGGATGGAGGCTGTAAAGTAGTTCTTTCAGCACTTT  690

seq1  GATGGTGGATTTATATTCCCTATCAGTGTGAGACAGAGACATGGCACTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGATTTATATTCCCTATCAGTGTGAGACAGAGACATGGCACTTG  740

seq1  GTCATAGATCTAGCCAAGAAAACCACCTCATGTTTCTTTCAGAGAACTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGATCTAGCCAAGAAAACCACCTCATGTTTCTTTCAGAGAACTGG  790

seq1  GAACTTTATACTTGCAACAATGATTAGTTTCTTAATTAGATTACTCACCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTATACTTGCAACAATGATTAGTTTCTTAATTAGATTACTCACCA  840

seq1  GTCACCCCTACCTCCATTACCAAATGAGTTTCAGGATTTTGCTTGTCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCCTACCTCCATTACCAAATGAGTTTCAGGATTTTGCTTGTCTCT  890

seq1  ACTTCCCATTTCCTCCTTTATTTACTGTCAACACATCTGTGCCAACTACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCATTTCCTCCTTTATTTACTGTCAACACATCTGTGCCAACTACT  940

seq1  TCACATTATTCAACAATAAAATTATCTCTAAAATAGAGACCAACTTCTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTATTCAACAATAAAATTATCTCTAAAATAGAGACCAACTTCTAA  990

seq1  GTCATCAACCACAGTTGCCTTTGTTAAAACTGTTGCAATCTTTGCTGGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAACCACAGTTGCCTTTGTTAAAACTGTTGCAATCTTTGCTGGCA  1040

seq1  TTAAAGATTTTTGTATAGTAGGAAATGCTTTAGCTTGATAACTTTGTCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTTTTGTATAGTAGGAAATGCTTTAGCTTGATAACTTTGTCTG  1090

seq1  TGTTCTCATACATCATAAAAAAGATACAGTATACACGGTAATGTCAGTCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCATACATCATAAAAAAGATACAGTATACACGGTAATGTCAGTCT  1140

seq1  TCCTGGAATTC  1158
      |||||||||||
seq2  TCCTGGAATTC  1151