BAC Information

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BAC

Clone NameB6Ng01-100D20
Chromosome6 (Build37)6 (Build37)
Map Location 146,023,756 - 146,024,802146,150,407 - 146,150,596
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn
Downstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100D20.bB6Ng01-100D20.g
ACCDH909796DH909797
length1,044579
definitionDH909796|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D20, 5' end.DH909797|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,023,756 - 146,024,802)(146,150,407 - 146,150,596)
sequence
gaattctataccctcttctaaccttcttagcactgatgacacacatacta
tgcatacataaatgcatgccaaccactcaaacataaagtaaaaatatata
agtctttaatttttaatgactacaaattattttatgaatgtgcatgttgt
tctcagaggccatgagagggcatgagatgctgtgcagctggaattacagg
catttgtgagcctcctaacatgggtacaaggaactgtcaccaggtcttct
gtggtggtagcaagtgcttacttctgagatgtctctctagcccagaaaat
gtattctttttttttttaagatgtattcatttgttttatgtatatgagta
cgcagtagctgttgagggcattggattctattacagatggttgtgagcca
ccatgtggttgctgggaattgaactctagacctctggaagaacagttagt
gctcttaaccactgagccatctctccagcccccagatggattcttaataa
ataatgaaccagtttattatcaactgataagctaaaaaaaatacatgaga
gagcaaacagtcaacagtgacagagaaataacacagaatgtgaacaatga
tgggcaaacaggggacctcaggatgcacacatccccagagacatggccta
ccagacacttcgtgaagaaccagagaccttgaacatgcttcttaccactc
atcagaagcctcccagcagatgaaagccagaaccaagtggttttattgct
gagttctgccacacacttgaaaatctgatgacggtggctctccaagtctc
cccacaaaatgggatggcgaggaaacactttccaactcacttttatcagg
ccagcattctccggtgccaatgctttcgtgaagacaatttaagaaaggaa
accaaaggctgacatgctcagtgaacataaatcctcatcacagcatgtta
tcacaccaccatgactaaggagggctttccccttgaattcaggatggtcg
atgatgaattaaaacctggtgtaattcatattcctccttcagtc
gaattctattgctgtgaagagacaccatgaccatggcatttaatggggga
ttgctacagatcgttcagaagtttagtccattatcatgcatggcagcacg
caggtagacatggtactagagagatagctgagagttctacatccagatct
gcagacgtagtgccagggaagtattatgaaccccaaaagatcagacagga
gccgattcagtgcaatcatatcagggcctttattcaagctggcttgggcc
cctcagcccactgccaacatggttttggtggagaggagccctgaacatct
attggggtaaagttttatagaaagcagcaagccaggtggggtggtgtgtg
tgtgtgtgtgtgtgtgtgtgtcactcactcacacacacacacactcccac
ccacacacccctacacacatactacccacacatgcaacatacacacacat
actacccacacacctatatatacacaaaccactatatacacatacatgca
tcatatatttcacaagcatcagacagatacatgaactacctcacacacac
ttgagactgatagagagagagagtgagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146023756_146024802
seq2: B6Ng01-100D20.b_45_1088

seq1  GAATTCTATACCCTCTTCTAACCTTCTTAGCACTGATGACACACATACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACCCTCTTCTAACCTTCTTAGCACTGATGACACACATACTA  50

seq1  TGCATACATAAATGCATGCCAACCACTCAAACATAAAGTAAAAATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACATAAATGCATGCCAACCACTCAAACATAAAGTAAAAATATATA  100

seq1  AGTCTTTAATTTTTAATGACTACAAATTATTTTATGAATGTGCATGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAATTTTTAATGACTACAAATTATTTTATGAATGTGCATGTTGT  150

seq1  TCTCAGAGGCCATGAGAGGGCATGAGATGCTGTGCAGCTGGAATTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGGCCATGAGAGGGCATGAGATGCTGTGCAGCTGGAATTACAGG  200

seq1  CATTTGTGAGCCTCCTAACATGGGTACAAGGAACTGTCACCAGGTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGAGCCTCCTAACATGGGTACAAGGAACTGTCACCAGGTCTTCT  250

seq1  GTGGTGGTAGCAAGTGCTTACTTCTGAGATGTCTCTCTAGCCCAGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTAGCAAGTGCTTACTTCTGAGATGTCTCTCTAGCCCAGAAAAT  300

seq1  GTATTCTTTTTTTTTTTAAGATGTATTCATTTGTTTTATGTATATGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTTTTTTTTTTTAAGATGTATTCATTTGTTTTATGTATATGAGTA  350

seq1  CGCAGTAGCTGTTGAGGGCATTGGATTCTATTACAGATGGTTGTGAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTAGCTGTTGAGGGCATTGGATTCTATTACAGATGGTTGTGAGCCA  400

seq1  CCATGTGGTTGCTGGGAATTGAACTCTAGACCTCTGGAAGAACAGTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTTGCTGGGAATTGAACTCTAGACCTCTGGAAGAACAGTTAGT  450

seq1  GCTCTTAACCACTGAGCCATCTCTCCAGCCCCCAGATGGATTCTTAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACCACTGAGCCATCTCTCCAGCCCCCAGATGGATTCTTAATAA  500

seq1  ATAATGAACCAGTTTATTATCAACTGATAAGCTAAAAAAAATACATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAACCAGTTTATTATCAACTGATAAGCTAAAAAAAATACATGAGA  550

seq1  GAGCAAACAGTCAACAGTGACAGAGAAATAACACAGAATGTGAACAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAACAGTCAACAGTGACAGAGAAATAACACAGAATGTGAACAATGA  600

seq1  TGGGCAAACAGGGGACCTCAGGATGCACACATCCCCAGAGACATGGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAACAGGGGACCTCAGGATGCACACATCCCCAGAGACATGGCCTA  650

seq1  CCAGACACTTCGTGAAGAACCAGAGACCTTGAACATGCTTCTTACCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACTTCGTGAAGAACCAGAGACCTTGAACATGCTTCTTACCACTC  700

seq1  ATCAGAAGCCTCCCAGCAGATGAAAGCCAGAACCAAGTGGTTTTATTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGCCTCCCAGCAGATGAAAGCCAGAACCAAGTGGTTTTATTGCT  750

seq1  GAGTTCTGCCACACACTTGAAAATCTGATGACGGTGGCTCTCCAAGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGCCACACACTTGAAAATCTGATGACGGTGGCTCTCCAAGTCTC  800

seq1  CCCACAAAAGTGGATGGCGAGGAAACACTTCCAAACTCAC-TTTATCAGG  849
      |||||||||  ||||||||||||||||||| | ||||||| |||||||||
seq2  CCCACAAAATGGGATGGCGAGGAAACACTTTCCAACTCACTTTTATCAGG  850

seq1  CCAGCATTCTCCGGTGCCAATGC-TTCGTGAAGACAATTTAAGAAAGGAA  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAGCATTCTCCGGTGCCAATGCTTTCGTGAAGACAATTTAAGAAAGGAA  900

seq1  ACCAAAGGCTGACATGCTCAGTGAACATAAATCCTCATCAACAGCATGTT  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCAAAGGCTGACATGCTCAGTGAACATAAATCCTCATC-ACAGCATGTT  949

seq1  ATCACA-CACCATGACTAAGGAGGGCTTCCCCCTGGAATTCAAGGATGGT  997
      |||||| ||||||||||||||||||||| ||||| |||||| ||||||| 
seq2  ATCACACCACCATGACTAAGGAGGGCTTTCCCCTTGAATTC-AGGATGG-  997

seq1  TCGATGAATGAATTAATAACCTGGTGTAAATTCATATT-CTCCTTCCAGT  1046
      |||||| ||||||||| |||||||||| |||||||||| |||||| ||||
seq2  TCGATG-ATGAATTAA-AACCTGGTGT-AATTCATATTCCTCCTT-CAGT  1043

seq1  C  1047
      |
seq2  C  1044

seq1: chr6_146150407_146150596
seq2: B6Ng01-100D20.g_449_648

seq1  --CACACACACACA----CACACACACACCCCTACACACATACTACCCAC  44
        ||||||||||||    ||| ||||||||||||||||||||||||||||
seq2  CACACACACACACACTCCCACCCACACACCCCTACACACATACTACCCAC  50

seq1  ACATGCAACACACACACACATACTACCCACACACCTATATATACACAAAC  94
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAACATACACACACATACTACCCACACACCTATATATACACAAAC  100

seq1  CACAATATACACATACATGCATCACATA-TTCACAAGCATCAGACAGACA  143
      ||| |||||||||||||||||||| ||| ||||||||||||||||||| |
seq2  CACTATATACACATACATGCATCATATATTTCACAAGCATCAGACAGATA  150

seq1  CATGTACTACAACACACACAC---ACAGAGACAGAGAGAGAGAGAGAGAG  190
      |||| |||||  |||||||||   | |  || |||||||||||| |||||
seq2  CATGAACTACCTCACACACACTTGAGACTGATAGAGAGAGAGAGTGAGAG  200