BAC Information

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BAC

Clone NameB6Ng01-100F22
Chromosome6 (Build37)
Map Location 112,578,402 - 112,769,845
singlet/doubletdoublet
Overlap geneRad18, Srgap3
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077
Downstream geneEG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100F22.bB6Ng01-100F22.g
ACCDH909890DH909891
length1,111732
definitionDH909890|Mus musculus domesticus DNA, BAC clone: B6Ng01-100F22, 5' end.DH909891|Mus musculus domesticus DNA, BAC clone: B6Ng01-100F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,578,402 - 112,579,508)(112,769,116 - 112,769,845)
sequence
gaattctcatttctcaggccgaagtacacacgtttgctggtcgtgggaac
tcacttgtgagccgcttcccaggcttcctcttcttccagaagatctctta
tgatgtctgaactggaactaaaaggacacgtgtcagcaatgccactcctt
gtgaggtctgtcctaatccaagcatgagccctgggcgatggggactggga
gatgggcaaagtggcacaggtgacactgaacggtgggcatgttcaccatg
cacactgtgaggatagttgcacagccacattcctatgtgcaacctcacca
aattggtccaattatatgccaaataaatttcaaaaaagctgtaaaagctg
tcatgaattagcaataatgaaaactatgaagaaagcttaaataaatccct
caacacaaaacctgagtctagacagagcagcaacatgagactctttaatc
tcttatgccaatcaaagatcaaatcacattttatcagttcccagcactat
caaaaaggaaaagagaaaaaaatgtgctttaaaaactaaattctagtgat
gagattcacaagcgataactctctaagtggcttttagtctcttggtaacc
aacataaagtgaagcataatgctagagagccaagctaataatggaagtgt
gttatagaaatgtgacctagcttaaaacgccacactctccagtggtgcac
agaaaacaaggctgtcggggaggcatgaattattcctttaaaagaaaaac
tgtctgaagcctttagcatctcgttcccatcttatcaataaaagttactt
taaaaaacccacatgtctaccagtatcaaacacacttctctagaaattct
acactgaatgtcatgggaaccaaacgggacattcaaaaacaaaagtcgct
tagcagatgaggaatgctagggtgagaaacaccaaggttaaaaatattaa
atgctattaatttcttccaatgatacactaataaacacaaaggctttaaa
ttatgaaggctttaaagtgtcaacgaggggcctggagaaatgactcagtt
tgttaggagccactggctactctttcagagtccttcagattcaattttca
gcaacacgtgg
gaattcactttgccctggtactttcataagttcctgaggctattctagtg
tgtaacatgggctcaaacctctgtgtcctgggtggcagggttccaactgc
tttgacctgacactccacatctgctgcaatcaggcctctagcttgtcttt
ccggccttactgtcaatgatcctctagtagcattctcagaatttggggct
tcctgagagaatttattattctctctaactctctgtctgtctgtctgtct
gcctgcctgcctgactgactgtctgcctgtttttttttctgtttctgtct
ctctttctcactctgtctctctgtctctctgtctctctctctctgtctct
ctgtctctctctctctctctctctctctctctctctctctctctcgtgta
tacacaaacacacacacacacacacacacacacacacacacacacacaca
cgtctgattggaaactccatacttgaccttcaatgacccagtataagcga
gaacttttctcaagggtcatcttctgcagcatgtgttctgtggtaaccag
caccttgctgggccctgagggcagtgagtacaatggaaacattgcctgtg
ctctgagagctctcagaaaaggtgagggtgggacatggaactaaaagcag
catatatcaggcagcctccttgaactataagacattccaggagataattt
atgaagagaaagagttatcttttggctcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_112578402_112579508
seq2: B6Ng01-100F22.b_47_1157

seq1  GAATTCTCATTTCTCAGGCCGAAGTACACACGTTTGCTGGTCGTGGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTCTCAGGCCGAAGTACACACGTTTGCTGGTCGTGGGAAC  50

seq1  TCACTTGTGAGCCGCTTCCCAGGCTTCCTCTTCTTCCAGAAGATCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTGAGCCGCTTCCCAGGCTTCCTCTTCTTCCAGAAGATCTCTTA  100

seq1  TGATGTCTGAACTGGAACTAAAAGGACACGTGTCAGCAATGCCACTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTGAACTGGAACTAAAAGGACACGTGTCAGCAATGCCACTCCTT  150

seq1  GTGAGGTCTGTCCTAATCCAAGCATGAGCCCTGGGCGATGGGGACTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTCTGTCCTAATCCAAGCATGAGCCCTGGGCGATGGGGACTGGGA  200

seq1  GATGGGCAAAGTGGCACAGGTGACACTGAACGGTGGGCATGTTCACCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCAAAGTGGCACAGGTGACACTGAACGGTGGGCATGTTCACCATG  250

seq1  CACACTGTGAGGATAGTTGCACAGCCACATTCCTATGTGCAACCTCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTGAGGATAGTTGCACAGCCACATTCCTATGTGCAACCTCACCA  300

seq1  AATTGGTCCAATTATATGCCAAATAAATTTCAAAAAAGCTGTAAAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTCCAATTATATGCCAAATAAATTTCAAAAAAGCTGTAAAAGCTG  350

seq1  TCATGAATTAGCAATAATGAAAACTATGAAGAAAGCTTAAATAAATCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATTAGCAATAATGAAAACTATGAAGAAAGCTTAAATAAATCCCT  400

seq1  CAACACAAAACCTGAGTCTAGACAGAGCAGCAACATGAGACTCTTTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAAACCTGAGTCTAGACAGAGCAGCAACATGAGACTCTTTAATC  450

seq1  TCTTATGCCAATCAAAGATCAAATCACATTTTATCAGTTCCCAGCACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGCCAATCAAAGATCAAATCACATTTTATCAGTTCCCAGCACTAT  500

seq1  CAAAAAGGAAAAGAGAAAAAAATGTGCTTTAAAAACTAAATTCTAGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGAAAAGAGAAAAAAATGTGCTTTAAAAACTAAATTCTAGTGAT  550

seq1  GAGATTCACAAGCGATAACTCTCTAAGTGGCTTTTAGTCTCTTGGTAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCACAAGCGATAACTCTCTAAGTGGCTTTTAGTCTCTTGGTAACC  600

seq1  AACATAAAGTGAAGCATAATGCTAGAGAGCCAAGCTAATAATGGAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAGTGAAGCATAATGCTAGAGAGCCAAGCTAATAATGGAAGTGT  650

seq1  GTTATAGAAATGTGACCTAGCTTAAAACGCCACACTCTCCAGTGGTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGAAATGTGACCTAGCTTAAAACGCCACACTCTCCAGTGGTGCAC  700

seq1  AGAAAACAAGGCTGTCGGGGAGGCATGAATTATTCCTTTAAAAGAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAGGCTGTCGGGGAGGCATGAATTATTCCTTTAAAAGAAAAAC  750

seq1  TGTCTGAAGCCTTTAGCATCTCGTTCCCATCTTATCAATAAAAGTTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGCCTTTAGCATCTCGTTCCCATCTTATCAATAAAAGTTACTT  800

seq1  TAAAAAACCCACATGTCTACCAGTATCAAACACACTTCTCTAGAAATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACCCACATGTCTACCAGTATCAAACACACTTCTCTAGAAATTCT  850

seq1  ACACTGAATGTCATGGGAACCAAACGGGACATTCAAAAACAAAAGTCGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATGTCATGGGAACCAAACGGGACATTCAAAAACAAAAGTCGCT  900

seq1  TAGCAGAATGAGGAAGGCTAGGGTGAGAAACAACAAGGTTAAAAATATTA  950
      |||||| |||||||| |||||||||||||||| |||||||||||||||||
seq2  TAGCAG-ATGAGGAATGCTAGGGTGAGAAACACCAAGGTTAAAAATATTA  949

seq1  AATGCTAATAATT--CTCCAATGATACACTAATAAACAACAAAAGCTTTA  998
      ||||||| |||||   ||||||||||||||||||||| ||||| ||||||
seq2  AATGCTATTAATTTCTTCCAATGATACACTAATAAAC-ACAAAGGCTTTA  998

seq1  AATTATGAAGGC-TTAAAGTGTCAACGAGGGG-CTGGAGAAATGACTCAG  1046
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AATTATGAAGGCTTTAAAGTGTCAACGAGGGGCCTGGAGAAATGACTCAG  1048

seq1  -TTGTTAAGAG-CACTGGCTACTCTTCCAGAGGTCCTCAG-TTCAATTTC  1093
       |||||| ||| |||||||||||||| |||||  | |||| |||||||| 
seq2  TTTGTTAGGAGCCACTGGCTACTCTTTCAGAGTCCTTCAGATTCAATTTT  1098

seq1  CAGCAACCACGTGG  1107
      |||||| |||||||
seq2  CAGCAA-CACGTGG  1111

seq1: chr6_112769116_112769845
seq2: B6Ng01-100F22.g_70_801 (reverse)

seq1  CTGTGAGCCAAAAGATAACTC-TTCTCTTCATAAATTATCTCCTGGAATG  49
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGTGAGCCAAAAGATAACTCTTTCTCTTCATAAATTATCTCCTGGAATG  50

seq1  TCTTATAGTTCCAGGAGGCTGCCTGATATATGCTGCTTTTAGTTCCATGT  99
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGTTCAAGGAGGCTGCCTGATATATGCTGCTTTTAGTTCCATGT  100

seq1  CCCACCCTCACC-TTTCTGAGAGCTCTCAGAGCACAGGCAATGTTTCCAT  148
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTCACCTTTTCTGAGAGCTCTCAGAGCACAGGCAATGTTTCCAT  150

seq1  TGTACTCACTGCCCTCAGGGCCCAGCAAGGTGCTGGTTACCACAGAACAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCACTGCCCTCAGGGCCCAGCAAGGTGCTGGTTACCACAGAACAC  200

seq1  ATGCTGCAGAAGATGACCCTTGAGAAAAGTTCTCGCTTATACTGGGTCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAGAAGATGACCCTTGAGAAAAGTTCTCGCTTATACTGGGTCAT  250

seq1  TGAAGGTCAAGTATGGAGTTTCCAATCAGACGTGTGTGTGTGTGTGTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCAAGTATGGAGTTTCCAATCAGACGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTATACACGAGAGAGAGAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTATACACGAGAGAGAGAGAG  350

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGAGAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGAGAGAG  400

seq1  ACAGAGAGACAGAGAGACAGAGTGAGAAAGAGAGACAGAAACAGAAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGACAGAGAGACAGAGTGAGAAAGAGAGACAGAAACAGAAAAAA  450

seq1  AAACAGGCAGACAGTCAGTCAGGCAGGCAGGCAGACAGACAGACAGACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCAGACAGTCAGTCAGGCAGGCAGGCAGACAGACAGACAGACAG  500

seq1  AGAGTTAGAGAGAATAATAAATTCTCTCAGGAAGCCCCAAATTCTGAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGAGAGAATAATAAATTCTCTCAGGAAGCCCCAAATTCTGAGAA  550

seq1  TGCTACTAGAGGATCATTGACAGTAAGGCCGGAAAGACAAGCTAGAGGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTAGAGGATCATTGACAGTAAGGCCGGAAAGACAAGCTAGAGGCC  600

seq1  TGATTGCAGCAGATGTGGAGTGTCAGGTCAAAGCAGTTGGAACCCTGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCAGCAGATGTGGAGTGTCAGGTCAAAGCAGTTGGAACCCTGCCA  650

seq1  CCCAGGACACAGAGGTTTGAGCCCATGTTACACACTAGAATAGCCTCAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACACAGAGGTTTGAGCCCATGTTACACACTAGAATAGCCTCAGG  700

seq1  AACTTATGAAAGTACCAGGGCAAAGTGAATTC  730
      ||||||||||||||||||||||||||||||||
seq2  AACTTATGAAAGTACCAGGGCAAAGTGAATTC  732