BAC Information

Click to search

BAC

Clone NameB6Ng01-100I19
Chromosome6 (Build37)12 (Build37)
Map Location 101,778,638 - 101,779,83599,558,971 - 99,559,253
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpp4r2, EG545870, LOC100043321, Pdzrn3
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100I19.bB6Ng01-100I19.g
ACCDH910018DH910019
length1,186644
definitionDH910018|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I19, 5' end.DH910019|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,778,638 - 101,779,835)(99,558,971 - 99,559,253)
sequence
gaattcagtatgaactggtagacgcctgtatgtatgtcagggaatttaca
gaaacccagaaaatggtcacttgtaagaaccggaaagaaacatttgacag
attacagacaaagctgaagcctgtctgtcctacaggcagacttaacagaa
tcaccatattcagggtattgggtataacactcagatccttagagtaataa
ctagccatgaataaacatagcttaaaaactctgaaaagacaaatcaaatg
aacaaaccaaaacaaacacactccaaataactaaatgatacatcaaaaga
aagccttggaagtttaaagagagattaaagtacccaggatacaataagag
agcattcacaatttatgtccttggacaaacgattgccatgcatgaaagga
cacaggaaaataagttatgagaaaacacttcaaatgatagaagttgcaca
gatgtagacatttgaattagcagatctagacattaaatcagttttatcaa
gaaaaactgtaatatgttccaacactactcttccccaaattaaaaataca
accagccctttgtggtacatggatagaaacccagcatattgaaggctgaa
acagaagaattgcaaggtaaaaccaagtgtagcacagtgactccaattca
gctttggctacatagtaaagctctaactcaaacaaaattatatatatatg
attatatatatgatttgaaaatacagttaaagtctcattttaatttacaa
agattttcctgaggatgtgtaagtattataacataacttaaaaattgaca
aaataattaacaactttctctcaaatctataatactggaggcattggagt
ataagaatcaactaaagaagtagactaatggaaaagaatggagatttcag
aaatatatctatgaatataaatcaactacttttcaacaaagatgatgaag
aagagaagattattaacagataatgctgaaatacttgtagccttgtgcaa
acgttcatctttgccattatacaaacatgaccttgagatgaatgcagaag
tcagtatgaaacataataaatatggaaaaaaatcactatgtttagattaa
gttaagaaatacacttaaatgttaacctcactaaaggaatgcaatctata
ctgaaaagctgtatttcaaaagacaatgtgactgat
gaattcctatactatgtcagaagcttttaggagatctgaagatatagcag
tgaacaacaatcagacgtctgtaatatagtggggcagatgataatggaat
gggttgtcgaaccaaaatattgagaacaacatagcagagctaaggaatga
ggacaggatgctgttgggtttaagagaaccatggaaggagttacagagac
aaaatttggagctgtgacaaaaggatggaccatctagtgattgccatatc
cgtggatccatcccataatcagcttccaaacgctgacaccattgcataca
ctagcaagcctttgttgcaaggacggtgatatagctgtcacttgtgagac
taggccggggtctagcaaacacagaagtggatgctcacagtcagctattg
gatgggtcacacggcccccaatggaggagctagagaaagtacccaaggag
ctaaagggaactgcaaccctataggtggaacaacaatatgaactaaccag
taccccggagcttctgactctagctgcatatgtatcaaaagatggcctag
ttggccatcactggaaagaaaggccctttggacttgcaaactttatatgc
tccagtacaggggaacgccagggccaaaaaggggagtgggtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101778638_101779835
seq2: B6Ng01-100I19.b_50_1235

seq1  GAATTCAGTATGAACTGGTAGACGCCTGTATGTATGTCAGGGAATTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATGAACTGGTAGACGCCTGTATGTATGTCAGGGAATTTACA  50

seq1  GAAACCCAGAAAATGGTCACTTGTAAGAACCGGAAAGAAACATTTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAGAAAATGGTCACTTGTAAGAACCGGAAAGAAACATTTGACAG  100

seq1  ATTACAGACAAAGCTGAAGCCTGTCTGTCCTACAGGCAGACTTAACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGACAAAGCTGAAGCCTGTCTGTCCTACAGGCAGACTTAACAGAA  150

seq1  TCACCATATTCAGGGTATTGGGTATAACACTCAGATCCTTAGAGTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATATTCAGGGTATTGGGTATAACACTCAGATCCTTAGAGTAATAA  200

seq1  CTAGCCATGAATAAACATAGCTTAAAAACTCTGAAAAGACAAATCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCATGAATAAACATAGCTTAAAAACTCTGAAAAGACAAATCAAATG  250

seq1  AACAAACCAAAACAAACACACTCCAAATAACTAAATGATACATCAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCAAAACAAACACACTCCAAATAACTAAATGATACATCAAAAGA  300

seq1  AAGCCTTGGAAGTTTAAAGAGAGATTAAAGTACCCAGGATACAATAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGGAAGTTTAAAGAGAGATTAAAGTACCCAGGATACAATAAGAG  350

seq1  AGCATTCACAATTTATGTCCTTGGACAAACGATTGCCATGCATGAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCACAATTTATGTCCTTGGACAAACGATTGCCATGCATGAAAGGA  400

seq1  CACAGGAAAATAAGTTATGAGAAAACACTTCAAATGATAGAAGTTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAAATAAGTTATGAGAAAACACTTCAAATGATAGAAGTTGCACA  450

seq1  GATGTAGACATTTGAATTAGCAGATCTAGACATTAAATCAGTTTTATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGACATTTGAATTAGCAGATCTAGACATTAAATCAGTTTTATCAA  500

seq1  GAAAAACTGTAATATGTTCCAACACTACTCTTCCCCAAATTAAAAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTGTAATATGTTCCAACACTACTCTTCCCCAAATTAAAAATACA  550

seq1  ACCAGCCCTTTGTGGTACATGGATAGAAACCCAGCATATTGAAGGCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCTTTGTGGTACATGGATAGAAACCCAGCATATTGAAGGCTGAA  600

seq1  ACAGAAGAATTGCAAGGTAAAACCAAGTGTAGCACAGTGACTCCAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAATTGCAAGGTAAAACCAAGTGTAGCACAGTGACTCCAATTCA  650

seq1  GCTTTGGCTACATAGTAAAGCTCTAACTCAAACAAAATTATATATATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCTACATAGTAAAGCTCTAACTCAAACAAAATTATATATATATG  700

seq1  ATTATATATATGATTTGAAAATACAGTTAAAGTCTCATTTTAATTTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATATGATTTGAAAATACAGTTAAAGTCTCATTTTAATTTACAA  750

seq1  AGATTTTCCTGAGGATGTGTAAGTATTATAACATAACTTAAAAATTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCCTGAGGATGTGTAAGTATTATAACATAACTTAAAAATTGACA  800

seq1  AAATAATTAACAACTTTCTCTCAAATCTATAATACTGGAGGCATTGGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTAACAACTTTCTCTCAAATCTATAATACTGGAGGCATTGGAGT  850

seq1  ATAAGAATCAACTAAAGAAGTAGACTAATGGAAAAGAATGGAGATTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATCAACTAAAGAAGTAGACTAATGGAAAAGAATGGAGATTTCAG  900

seq1  AAATATATCTATGAATATAAATCAACTACTTTTCAACAAAAGATGATGAA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAATATATCTATGAATATAAATCAACTACTTTTCAAC-AAAGATGATGAA  949

seq1  GAAGAGAAAGAATTATTAAACAGATAATGCTGAAATACTTGTTAGCCTTG  1000
      ||||||||   |||||| ||||||||||||||||||||||| ||||||||
seq2  GAAGAGAA--GATTATT-AACAGATAATGCTGAAATACTTG-TAGCCTTG  995

seq1  TGCAAACGTTCATCTTTGCCA-TATACAAACATGACCTTGAGATGAATGC  1049
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCAAACGTTCATCTTTGCCATTATACAAACATGACCTTGAGATGAATGC  1045

seq1  AGAAGTCAGTATGAAACATAATAAATATGAAACATAATCAACTAATGTTT  1099
      ||||||||||||||||||||||||||||| || | |||| ||| ||||||
seq2  AGAAGTCAGTATGAAACATAATAAATATGGAAAAAAATC-ACT-ATGTTT  1093

seq1  AAGATTAAAGTTAAG-AATACAATTTAAAATGTATAACTCACTAAGGAAA  1148
       ||||| |||||||| |||||| ||  ||||||  | |||||||| | ||
seq2  -AGATT-AAGTTAAGAAATACACTT--AAATGTTAACCTCACTAAAGGAA  1139

seq1  TGGCAAATCATAACTGAAAAGCTGTA-TTCAAAAGACAATAGTGACATGA  1197
      ||   ||||   |||||||||||||| ||||||||||||| ||||| |||
seq2  TG--CAATCTATACTGAAAAGCTGTATTTCAAAAGACAAT-GTGAC-TGA  1185

seq1  T  1198
      |
seq2  T  1186

seq1: chr12_99558971_99559253
seq2: B6Ng01-100I19.g_433_710

seq1  AAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCC  50
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  AAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGGTCACACGGCC  50

seq1  CCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAA  100
      ||||||||||||||||||||||||| |||||||||||||| || ||||||
seq2  CCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAA  100

seq1  CCCTGTAGATGCAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTG  150
      |||| ||| || ||||||| ||||||||||||||||||||||||||  ||
seq2  CCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCGGAGCTTCTG  150

seq1  ACGCTAGCTGCATATGTATCAAAAGATGGCCTAGCCGGCCATCACTGGAA  200
      || |||||||||||||||||||||||||||||||  ||||||||||||||
seq2  ACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTTGGCCATCACTGGAA  200

seq1  AGAGAGGCCCATTGGACATGCAAACTTTATATGCACCAGTACAGGGGAAT  250
      ||| |||||| |||||| |||||||||||||||| |||||||||||||| 
seq2  AGAAAGGCCCTTTGGACTTGCAAACTTTATATGCTCCAGTACAGGGGAAC  250

seq1  GCCAGGGCCAAAAAATGGGAATGGGTGGGTAGG  283
      ||||||||||||||  |||   | |||||||||
seq2  GCCAGGGCCAAAAA--GGG---GAGTGGGTAGG  278