BAC Information

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BAC

Clone NameB6Ng01-100N10
Chromosome6 (Build37)
Map Location 22,505,320 - 22,611,676
singlet/doubletdoublet
Overlap geneLOC100040959
Upstream geneKcnd2, Tspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948
Downstream geneLOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100N10.bB6Ng01-100N10.g
ACCDH910213DH910214
length1,1321,142
definitionDH910213|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N10, 5' end.DH910214|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,610,651 - 22,611,676)(22,505,320 - 22,506,470)
sequence
gaattcaatctctaaagcaaagttgtgatgatggagaaaagagtcaaggc
agcaaccaaacaccctgattctggcagatgtactgcgtcacctactagct
gctcgtggtgattctaaaagtgaaacagacaaaaagcctactaagttctc
agctgatctgtatatacagaaaatttctaagttgagtaaatgaaattctg
acctgaatcctaaaaagcagaaagtcagggcccctcaatcaacctttcat
tttaaccaatttatagacctatcatgctctcaatgaaaggaagaatgaga
ttccactaaaatagatcttggaatactgccaaagaattacaccattaatc
tctccctcaattttccctcataggaattgatgactttattccagggcaaa
tttattagcaaatgggaactaatgagaccttcaggagtttagctccaagc
tcatactaattccaatagaccccaaatataactgtgtggcaatagtaagt
ccactactcttagaagtagcttatgaaattcaggcaatcaatggaactgt
agtttaagtccatgtgtaatggactcagttggttccaaaacatatactgg
caagtgattcctcaagtgtatcaaatttataatacattgttagctcccat
gaatttgatcatctttcccttctgtaggataccacattgataatatttga
atggttagtcctagtgaataataaatgcatattattgtaaatttactggt
aagacatttgcatatggtagagtgagaagcttctaggaacttaccaagat
gtttgctctatcgtaaagtacgatttgtttcctctggtccctcctacaac
cattagagaaaaaaatacagtgagcttccttgagctttggaagaaaccta
gtcctaacttgatattactttgagaccatgtccaagtgacctaacaaaga
tgcaattatagcctgggacccaagtcagaagaagactttatggctgacta
tgaagtggcttcaccattatgctcgcatgttcagcagattcaacggtgct
tggagtgatgatagcattagagaggctcttcgacctcttttgccaagtgt
caatcactgaagaactgcaggctcaggtcaag
gaattcatatggtggcagaggtcaccactggttctaataactcccagacc
tacatggtgtccgtgcttctccctccaaagcctgacccaaaaagcccttt
ctctatcttgactcctcctcttcctcctgggacctggaaaacccacctct
atatcttcccccagctactggcttctgccatctttattgacccaatcaag
agacgattggggaacctccacctacactaaaaggcgtttggaaggcagca
atcaatgtatatcaacatttttgtagaaatgtccctagaccagactgaag
aatgtatgaagagagcaagttcaatatcttcatgatggttctctgtaaat
atttatttatgaattaatatgtaaaaataagcggaacaggaagacatata
aggactgtgcctacaaattcaatagttgctagtgttattaaaaacagact
tttgtgtgagtggcctgtgaagtcacagtgaagaatctgaaaccatttca
tcttcttccccaccattgagacctcaattcttctccaattactcaaatgt
aaatttaaaatggaagtcaaataacctcttacatttcctttgctgcataa
tatgtgacacaatggggggtgctatttaaaatattttaaaactgataagg
cctggggactatctgatcaaaatacatgctgaatgctgaatgctaaatag
aaaaaaaaaaaaaaacacaaccattttggctggatatcatttctgtagtt
aatggattcacctttaaatgctttgattttattgatcttctctgaggccc
cagagcaagtttttctcagtcagttaccagatgatttgttcttttcaggc
agggatgagactcctttttgtagaagatagaggatgggaagacttaagtg
tcccctgactcctgctgtgctggctctgatacatgccacccagaggggag
ttcagccgcagtattttttaaagctatgaaggaaattcccacaaagcaat
tgttttacttgatatttttaaggtactgagtattcaggagattaagaaga
atattttttgggcttgagaagatggctagcagttaaaagcacccctggcc
cttcaggtcctgagtcaatcccacgaaccaatggtggactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_22610651_22611676
seq2: B6Ng01-100N10.b_152_1180 (reverse)

seq1  CTTGACCT--GCAAG--GTCCTTCAGTGATTGACACTTGGC-AAAGAGTC  45
      ||||||||  ||  |  || ||||||||||||||||||||| ||||||  
seq2  CTTGACCTGAGCCTGCAGTTCTTCAGTGATTGACACTTGGCAAAAGAGGT  50

seq1  TGAAGAGCATCTCTATATGCTATCATCACTCCAAGCACCGTTGAATCTGC  95
       ||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  CGAAGAGCCTCTCTA-ATGCTATCATCACTCCAAGCACCGTTGAATCTGC  99

seq1  TTGAACATGCGAGCATATTGGTGAAGCCACTTCATAGTCAGCCATAAAGT  145
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  -TGAACATGCGAGCATAATGGTGAAGCCACTTCATAGTCAGCCATAAAGT  148

seq1  CTTCTTCTGACTTGGGTCCCAGGCTATAATTGCATCTTTGTTAGGTCACT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGACTTGGGTCCCAGGCTATAATTGCATCTTTGTTAGGTCACT  198

seq1  TGGACATGGTCTC-AAGTAATATCAAGTTAGGACTAGGTTTCTTCCAAAG  244
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGACATGGTCTCAAAGTAATATCAAGTTAGGACTAGGTTTCTTCCAAAG  248

seq1  CTCAAGGAAGCTCACTGTTATTTTTTTCTCTAATGGTTGTAGGAGGGACC  294
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCAAGGAAGCTCACTG-TATTTTTTTCTCTAATGGTTGTAGGAGGGACC  297

seq1  AGAGGAAACAAATCGTACTTTACGATAGAGCAAACATCTTGGTAAGTTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACAAATCGTACTTTACGATAGAGCAAACATCTTGGTAAGTTCC  347

seq1  TAGAAGCTTCTCACTCTACCATATGCAAATGTCTTACCAGTAAATTTACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTTCTCACTCTACCATATGCAAATGTCTTACCAGTAAATTTACA  397

seq1  ATAATATGCATTTATTATTCACTAGGACTAACCATTCAAATATTATCAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGCATTTATTATTCACTAGGACTAACCATTCAAATATTATCAAT  447

seq1  GTGGTATCCTACAGAAGGGAAAGATGATCAAATTCATGGGAGCTAACAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATCCTACAGAAGGGAAAGATGATCAAATTCATGGGAGCTAACAAT  497

seq1  GTATTATAAATTTGATACACTTGAGGAATCACTTGCCAGTATATGTTTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATAAATTTGATACACTTGAGGAATCACTTGCCAGTATATGTTTTG  547

seq1  GAACCAACTGAGTCCATTACACATGGACTTAAACTACAGTTCCATTGATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACTGAGTCCATTACACATGGACTTAAACTACAGTTCCATTGATT  597

seq1  GCCTGAATTTCATAAGCTACTTCTAAGAGTAGTGGACTTACTATTGCCAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATTTCATAAGCTACTTCTAAGAGTAGTGGACTTACTATTGCCAC  647

seq1  ACAGTTATATTTGGGGTCTATTGGAATTAGTATGAGCTTGGAGCTAAACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATATTTGGGGTCTATTGGAATTAGTATGAGCTTGGAGCTAAACT  697

seq1  CCTGAAGGTCTCATTAGTTCCCATTTGCTAATAAATTTGCCCTGGAATAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGTCTCATTAGTTCCCATTTGCTAATAAATTTGCCCTGGAATAA  747

seq1  AGTCATCAATTCCTATGAGGGAAAATTGAGGGAGAGATTAATGGTGTAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCAATTCCTATGAGGGAAAATTGAGGGAGAGATTAATGGTGTAAT  797

seq1  TCTTTGGCAGTATTCCAAGATCTATTTTAGTGGAATCTCATTCTTCCTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCAGTATTCCAAGATCTATTTTAGTGGAATCTCATTCTTCCTTT  847

seq1  CATTGAGAGCATGATAGGTCTATAAATTGGTTAAAATGAAAGGTTGATTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAGCATGATAGGTCTATAAATTGGTTAAAATGAAAGGTTGATTG  897

seq1  AGGGGCCCTGACTTTCTGCTTTTTAGGATTCAGGTCAGAATTTCATTTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCCTGACTTTCTGCTTTTTAGGATTCAGGTCAGAATTTCATTTAC  947

seq1  TCAACTTAGAAATTTTCTGTATATACAGATCAGCTGAGAACTTAGTAGGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTAGAAATTTTCTGTATATACAGATCAGCTGAGAACTTAGTAGGC  997

seq1  TTTTTGTCTGTTTCACTTTTAGAATCACCACG  1026
      ||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGTTTCACTTTTAGAATCACCACG  1029

seq1: chr6_22505320_22506470
seq2: B6Ng01-100N10.g_68_1209

seq1  GAATTCATATGGTGGCAGAGGTCACCACTGGTTCTAATAACTCCCAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGGTGGCAGAGGTCACCACTGGTTCTAATAACTCCCAGACC  50

seq1  TACATGGTGTCCGTGCTTCTCCCTCCAAAGCCTGACCCAAAAAGCCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTGTCCGTGCTTCTCCCTCCAAAGCCTGACCCAAAAAGCCCTTT  100

seq1  CTCTATCTTGACTCCTCCTCTTCCTCCTGGGACCTGGAAAACCCACCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTTGACTCCTCCTCTTCCTCCTGGGACCTGGAAAACCCACCTCT  150

seq1  ATATCTTCCCCCAGCTACTGGCTTCTGCCATCTTTATTGACCCAATCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCCCCCAGCTACTGGCTTCTGCCATCTTTATTGACCCAATCAAG  200

seq1  AGACGATTGGGGAACCTCCACCTACACTAAAAGGCGTTTGGAAGGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGATTGGGGAACCTCCACCTACACTAAAAGGCGTTTGGAAGGCAGCA  250

seq1  ATCAATGTATATCAACATTTTTGTAGAAATGTCCCTAGACCAGACTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTATATCAACATTTTTGTAGAAATGTCCCTAGACCAGACTGAAG  300

seq1  AATGTATGAAGAGAGCAAGTTCAATATCTTCATGATGGTTCTCTGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGAAGAGAGCAAGTTCAATATCTTCATGATGGTTCTCTGTAAAT  350

seq1  ATTTATTTATGAATTAATATGTAAAAATAAGCGGAACAGGAAGACATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATGAATTAATATGTAAAAATAAGCGGAACAGGAAGACATATA  400

seq1  AGGACTGTGCCTACAAATTCAATAGTTGCTAGTGTTATTAAAAACAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGTGCCTACAAATTCAATAGTTGCTAGTGTTATTAAAAACAGACT  450

seq1  TTTGTGTGAGTGGCCTGTGAAGTCACAGTGAAGAATCTGAAACCATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGAGTGGCCTGTGAAGTCACAGTGAAGAATCTGAAACCATTTCA  500

seq1  TCTTCTTCCCCACCATTGAGACCTCAATTCTTCTCCAATTACTCAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCCCACCATTGAGACCTCAATTCTTCTCCAATTACTCAAATGT  550

seq1  AAATTTAAAATGGAAGTCAAATAACCTCTTACATTTCCTTTGCTGCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAATGGAAGTCAAATAACCTCTTACATTTCCTTTGCTGCATAA  600

seq1  TATGTGACACAATGGGGGGTGCTATTTAAAATATTTTAAAACTGATAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACACAATGGGGGGTGCTATTTAAAATATTTTAAAACTGATAAGG  650

seq1  CCTGGGGACTATCTGATCAAAATACATGCTGAATGCTGAATGCTAAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGACTATCTGATCAAAATACATGCTGAATGCTGAATGCTAAATAG  700

seq1  AAAAAAAAAAAAAAACACAACCATTTTGGCTGGATATCATTTCTGTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACACAACCATTTTGGCTGGATATCATTTCTGTAGTT  750

seq1  AATGGATTCACCTTTAAATGCTTTGATTTTATTGATCTTCTCTGAGGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTCACCTTTAAATGCTTTGATTTTATTGATCTTCTCTGAGGCCC  800

seq1  CAGAGCAAGTTTTTCTCAGTCAGTTACCAGATGATTTGTTCTTTTCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAGTTTTTCTCAGTCAGTTACCAGATGATTTGTTCTTTTCAGGC  850

seq1  A-GGATGAGACTCC-TTTTGTAGAAGATAGAGGAT-GGAAGACTTAAGTG  897
      | |||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  AGGGATGAGACTCCTTTTTGTAGAAGATAGAGGATGGGAAGACTTAAGTG  900

seq1  TCCCCTGACTCCTGCTGTGCTGGCTCTGATACATGCCACCCAGA-GGGAG  946
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCCCTGACTCCTGCTGTGCTGGCTCTGATACATGCCACCCAGAGGGGAG  950

seq1  TTCAGCCGCAGTATTTTTTTAAAAGCTATGAAGGAAAATTTCCCACAAAA  996
      |||||||||||||||||||  ||||||||||||||||  ||||||| |||
seq2  TTCAGCCGCAGTATTTTTT--AAAGCTATGAAGGAAA--TTCCCAC-AAA  995

seq1  GCAATTGTTTTTACTTGATATTTTTAA-GTACTGAAGTATCAGGGAGATA  1045
      ||||||| ||||||||||||||||||| |||||| |||||   |||||| 
seq2  GCAATTG-TTTTACTTGATATTTTTAAGGTACTG-AGTATTCAGGAGATT  1043

seq1  AAGAAAGAATATTTTTTTGGGCTGGAG-AGATGGCTTAGCAGTTAAGAGC  1094
      ||| ||||||| ||||||||||| ||| ||||||| |||||||||| |||
seq2  AAG-AAGAATA-TTTTTTGGGCTTGAGAAGATGGC-TAGCAGTTAAAAGC  1090

seq1  ACCCACTGCCCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGG  1144
      ||||   |||||||   |||||||||||   |||||||  ||||| ||||
seq2  ACCCCTGGCCCTTC---AGGTCCTGAGT--CAATCCCACGAACCA-ATGG  1134

seq1  TGG-CTCA  1151
      ||| ||||
seq2  TGGACTCA  1142