BAC Information

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BAC

Clone NameB6Ng01-100O18
Chromosome6 (Build37)
Map Location 12,416,528 - 12,432,596
singlet/doubletdoublet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100O18.bB6Ng01-100O18.g
ACCDH910273DH910274
length1,1951,191
definitionDH910273|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O18, 5' end.DH910274|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,431,360 - 12,432,596)(12,416,528 - 12,417,651)
sequence
gaattctctatccagtgaaaatacttttttattatagactatggcaagct
gacttcttgaaagaaatggcagctaaaagcatttgttgtgaagcacttaa
gagtacagagtgaaaatagaatgtgtcaatcatgtgatcttggatggttt
attacatttttctatgaaaaaaaaatcagtgaaattttaagtgaaagaat
ctgtcctgcagtgggaatcatgtctggcatacaccaagtcctcctttaat
atgacctgaaatatcaggtaaagccagtgattgagagtacattatccttc
agcaggaatgctagacacagtttagaagtatctctgttggaggaaagccg
tgttcactgtgagagctgagcctaaagaagtaagattgtagggctcaagt
tctctattcagctcagaatattactcatttcttgagggtctctaacctcc
cccatctctgctgttgcagagagcttcatctggcagaactaaatcatata
gtcttgtggagaaactcactttccattttatattagtagctcctcaaatt
tgtttggagccaggtggtcagacctaagtcctgataaattaatgtgtctt
cccatctgcagtgcagctgagcccattgtagaataattccctgaccagag
aaacaagctgagaaaacccatcctgaagagggtcctgtgaggattccaag
aatgggctcagagatgatcacaaaatataaatttgctaaatgcttttgat
aacagacctctggttaaggatgtacctctcaattattctcacgtattctt
ctcacattgtatactacctgattccttagtaaggcaagaccagaggccta
aatcaccagtctactctgtcctatatccccgatgaattactatgctgaca
tgcaagtgtaacggatatctaaatatgaggctgccattttcactttgagt
gacatgagacactagaaagcacagccattccgtttctctgtgcgatattt
gaaacttccagatttgctttggaatagtgagagtctaaagctgagtgctc
actccttctcatgacacgatactctcatttttcttgtcgaggaaagcatt
ttaatcatgatcctgacctaaatataaatggtgatgatatacaaaatgat
aggactatgaaggcattgcatgacttagaaaaggtgtcaataaat
gaattctaaaacaatgaagcaattgtgcagttttctcaatgagaaaaata
agtagaaaaaaaaacctactacaaccaaaaatataaccatctgtttgggc
atagcaaacagtattttgtaatacaattggacgtgtctaacatatctatg
cctttaacaaataactttatagaaagggaaaaatatgatcacttatgata
ctaaaacttttcagttgacaaaattaaaactaaatcactgaccttattta
aataggtggtctctcccctatataaactattttcaattttcataatatcc
attcatatatttgcatgaaaggagatagacctgatgattttgtggatggc
taacacaaaagcagaaatttgatgataattcacttctgtttgagattttt
ttgcttcattcaaacactcattttgcaacactttggactagtatcttcct
aggaacttaaataagccagaaaatttatttgaactgagaaaataagttaa
gaagtagtaccaaaatgggagttaaatatcagtttgattttcagtaacta
agcatataatgtacactcagtctaaattatatttgaactgtgagttccca
gtcatacttagagaagcaaagattgttattttttctttgttttgattttc
catatgccactatcagaatgccaatctctgtcttctttcccttgtgcttt
agagcagaacaggggaaagctaaagttaggtttcagcatagcttattata
gctccaaaaaacaaaacaaaggacacaaattcatcatgaaagatctggag
aaacaatctccttttccatgtttcaatgtcaagtgccagctcagattcta
ctcagcgttatcctgagtggctgctgcagatcctggacaggatgacagat
tgtgtttaaaaggggaaaggctagtttctcagtgataatgatgtctattt
tccacctcagagaattcttctactattgagcagcgaccgagccacaggag
aacattttgcttgctggaagaagtagaggagatatgcgctgcaagatgtt
gcagtgcttctaggagcactagatgttttgcatatgctgcaaacagcata
aacttgtcgaaactagggacctgggggtccatggctcatacttcatggaa
tgcgagtctaaggattggaggtgaacgacccttagatgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12431360_12432596
seq2: B6Ng01-100O18.b_47_1241 (reverse)

seq1  ATTTATTTCAACACCTTTTCTCTAAAACTTCATTTGCAATTTGACAACTT  50
      |||||||   |||||||||||     |  |||  ||||||       | |
seq2  ATTTATT--GACACCTTTTCT-----AAGTCA--TGCAAT------GCCT  35

seq1  TCAATTAGTCTCTATTACTATTTTTGTTATTATCATCATCATTATATATT  100
      |||  ||||| |||| |    ||||||   |||||||| |||| ||||||
seq2  TCA--TAGTC-CTATCA----TTTTGT--ATATCATCACCATT-TATATT  75

seq1  TTAAGTTCAGTGTTTCCATGGATTTAAAATTGCTTCTCCTCTGACAAGAA  150
      |  || ||||  |   ||| ||||  ||| ||||| ||||| ||||||||
seq2  T--AGGTCAGGAT---CAT-GATT--AAAATGCTT-TCCTC-GACAAGAA  115

seq1  AAATGAGAGTATCCGTGTCATGAG-AGGGGTGAGCACCCTCAGCTTTTAG  199
      |||||||||||| ||||||||||| ||| |||||||  |||||| |||||
seq2  AAATGAGAGTAT-CGTGTCATGAGAAGGAGTGAGCA--CTCAGC-TTTAG  161

seq1  ACCTCTCACTTATTCCCAAAGCAATTCTGGGAGTTTTCAAATATCGCACA  249
      | ||||||| |||| ||||||||| ||||| || ||||||||||||||||
seq2  A-CTCTCAC-TATT-CCAAAGCAAATCTGGAAG-TTTCAAATATCGCACA  207

seq1  GAGAAACGGAATGGCTGTGCTTTCTAGTGTCTCATGTCACTCAAAGTGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACGGAATGGCTGTGCTTTCTAGTGTCTCATGTCACTCAAAGTGAA  257

seq1  AATGGCAGCCTCATATTTAGATATCCGTTACACTTGCATGTCAGCATAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGCCTCATATTTAGATATCCGTTACACTTGCATGTCAGCATAGT  307

seq1  AATTCATCGGGGATATAGGACAGAGTAGACTGGTGATTTAGGCCTCTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCGGGGATATAGGACAGAGTAGACTGGTGATTTAGGCCTCTGGT  357

seq1  CTTGCCTTACTAAGGAATCAGGTAGTATACAATGTGAGAAGAATACGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTACTAAGGAATCAGGTAGTATACAATGTGAGAAGAATACGTGA  407

seq1  GAATAATTGAGAGGTACATCCTTAACCAGAGGTCTGTTATCAAAAGCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTGAGAGGTACATCCTTAACCAGAGGTCTGTTATCAAAAGCATT  457

seq1  TAGCAAATTTATATTTTGTGATCATCTCTGAGCCCATTCTTGGAATCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATTTATATTTTGTGATCATCTCTGAGCCCATTCTTGGAATCCTC  507

seq1  ACAGGACCCTCTTCAGGATGGGTTTTCTCAGCTTGTTTCTCTGGTCAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCCTCTTCAGGATGGGTTTTCTCAGCTTGTTTCTCTGGTCAGGG  557

seq1  AATTATTCTACAATGGGCTCAGCTGCACTGCAGATGGGAAGACACATTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTACAATGGGCTCAGCTGCACTGCAGATGGGAAGACACATTAA  607

seq1  TTTATCAGGACTTAGGTCTGACCACCTGGCTCCAAACAAATTTGAGGAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGGACTTAGGTCTGACCACCTGGCTCCAAACAAATTTGAGGAGC  657

seq1  TACTAATATAAAATGGAAAGTGAGTTTCTCCACAAGACTATATGATTTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATATAAAATGGAAAGTGAGTTTCTCCACAAGACTATATGATTTAG  707

seq1  TTCTGCCAGATGAAGCTCTCTGCAACAGCAGAGATGGGGGAGGTTAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGATGAAGCTCTCTGCAACAGCAGAGATGGGGGAGGTTAGAGA  757

seq1  CCCTCAAGAAATGAGTAATATTCTGAGCTGAATAGAGAACTTGAGCCCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGAAATGAGTAATATTCTGAGCTGAATAGAGAACTTGAGCCCTA  807

seq1  CAATCTTACTTCTTTAGGCTCAGCTCTCACAGTGAACACGGCTTTCCTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTACTTCTTTAGGCTCAGCTCTCACAGTGAACACGGCTTTCCTCC  857

seq1  AACAGAGATACTTCTAAACTGTGTCTAGCATTCCTGCTGAAGGATAATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGATACTTCTAAACTGTGTCTAGCATTCCTGCTGAAGGATAATGT  907

seq1  ACTCTCAATCACTGGCTTTACCTGATATTTCAGGTCATATTAAAGGAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAATCACTGGCTTTACCTGATATTTCAGGTCATATTAAAGGAGGA  957

seq1  CTTGGTGTATGCCAGACATGATTCCCACTGCAGGACAGATTCTTTCACTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGTATGCCAGACATGATTCCCACTGCAGGACAGATTCTTTCACTT  1007

seq1  AAAATTTCACTGATTTTTTTTTCATAGAAAAATGTAATAAACCATCCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCACTGATTTTTTTTTCATAGAAAAATGTAATAAACCATCCAAG  1057

seq1  ATCACATGATTGACACATTCTATTTTCACTCTGTACTCTTAAGTGCTTCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATGATTGACACATTCTATTTTCACTCTGTACTCTTAAGTGCTTCA  1107

seq1  CAACAAATGCTTTTAGCTGCCATTTCTTTCAAGAAGTCAGCTTGCCATAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATGCTTTTAGCTGCCATTTCTTTCAAGAAGTCAGCTTGCCATAG  1157

seq1  TCTATAATAAAAAAGTATTTTCACTGGATAGAGAATTC  1237
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATAAAAAAGTATTTTCACTGGATAGAGAATTC  1195

seq1: chr6_12416528_12417651
seq2: B6Ng01-100O18.g_160_1259

seq1  TGTTTGGGCATAGCAAACAGTATTTTGTAATACAATTGGACGTGTCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGCATAGCAAACAGTATTTTGTAATACAATTGGACGTGTCTAAC  50

seq1  ATATCTATGCCTTTAACAAATAACTTTATAGAAAGGGAAAAATATGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATGCCTTTAACAAATAACTTTATAGAAAGGGAAAAATATGATCA  100

seq1  CTTATGATACTAAAACTTTTCAGTTGACAAAATTAAAACTAAATCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATACTAAAACTTTTCAGTTGACAAAATTAAAACTAAATCACTGA  150

seq1  CCTTATTTAAATAGGTGGTCTCTCCCCTATATAAACTATTTTCAATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTAAATAGGTGGTCTCTCCCCTATATAAACTATTTTCAATTTTC  200

seq1  ATAATATCCATTCATATATTTGCATGAAAGGAGATAGACCTGATGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCCATTCATATATTTGCATGAAAGGAGATAGACCTGATGATTTT  250

seq1  GTGGATGGCTAACACAAAAGCAGAAATTTGATGATAATTCACTTCTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGGCTAACACAAAAGCAGAAATTTGATGATAATTCACTTCTGTTT  300

seq1  GAGATTTTTTTGCTTCATTCAAACACTCATTTTGCAACACTTTGGACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTTTGCTTCATTCAAACACTCATTTTGCAACACTTTGGACTAG  350

seq1  TATCTTCCTAGGAACTTAAATAAGCCAGAAAATTTATTTGAACTGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCTAGGAACTTAAATAAGCCAGAAAATTTATTTGAACTGAGAAA  400

seq1  ATAAGTTAAGAAGTAGTACCAAAATGGGAGTTAAATATCAGTTTGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAAGAAGTAGTACCAAAATGGGAGTTAAATATCAGTTTGATTTT  450

seq1  CAGTAACTAAGCATATAATGTACACTCAGTCTAAATTATATTTGAACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTAAGCATATAATGTACACTCAGTCTAAATTATATTTGAACTGT  500

seq1  GAGTTCCCAGTCATACTTAGAGAAGCAAAGATTGTTATTTTTTCTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCAGTCATACTTAGAGAAGCAAAGATTGTTATTTTTTCTTTGTT  550

seq1  TTGATTTTCCATATGCCACTATCAGAATGCCAATCTCTGTCTTCTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTCCATATGCCACTATCAGAATGCCAATCTCTGTCTTCTTTCCC  600

seq1  TTGTGCTTTAGAGCAGAACAGGGGAAAGCTAAAGTTAGGTTTCAGCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTAGAGCAGAACAGGGGAAAGCTAAAGTTAGGTTTCAGCATAG  650

seq1  CTTATTATAGCTCCAAAAAACAAAACAAAGGACACAAATTCATCATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATAGCTCCAAAAAACAAAACAAAGGACACAAATTCATCATGAAA  700

seq1  GATCTGGAGAAACAATCTCCTTTTCCATGTTTCAATGTCAAGTGCCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAGAAACAATCTCCTTTTCCATGTTTCAATGTCAAGTGCCAGCT  750

seq1  CAGATTCTACTCAGCGTTATCCTGAGTGGCTGCTGCAGATCCTGGACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTACTCAGCGTTATCCTGAGTGGCTGCTGCAGATCCTGGACAGG  800

seq1  ATGACAGATTGTGTTTAAAAGGGGAAAGGCTAGTTTCTCAGTGATAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGATTGTGTTTAAAAGGGGAAAGGCTAGTTTCTCAGTGATAATGA  850

seq1  TGTCTATTTTCCCACCTCAGAGAATTCTTCTTACTATTGAGCAGCGACCG  900
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TGTCTATTTT-CCACCTCAGAGAATTCTTC-TACTATTGAGCAGCGACCG  898

seq1  AGCCACAGGAGGAAACAATTTTGCTTGCTGGAAGAAAGTAAGAGGGAAGG  950
      |||||||||||  ||| ||||||||||||||||| |||||       |||
seq2  AGCCACAGGAG--AAC-ATTTTGCTTGCTGGAAG-AAGTA------GAGG  938

seq1  AATTATGCCGGCTGCCAGATGTTGCAGTGCCTCTAAGGAGGCACTAGGAT  1000
      |  |||||  ||||| |||||||||||||| ||| |||| |||||| |||
seq2  AGATATGC--GCTGCAAGATGTTGCAGTGCTTCT-AGGA-GCACTA-GAT  983

seq1  GTTTCTGCATATGCTGCAGACAGCATAAAC-TGTCAGACCATGGGACCCT  1049
      |||| ||||||||||||| ||||||||||| ||||  | |  ||||||  
seq2  GTTT-TGCATATGCTGCAAACAGCATAAACTTGTCGAAACTAGGGACCTG  1032

seq1  GGGGTTCAATGCTCATACTTCAGTGAGATGCAGAGTCATAGGATTTGAGA  1099
      ||||| ||  |||||||||||| ||  |||| |||||  |||||| ||| 
seq2  GGGGTCCATGGCTCATACTTCA-TGGAATGC-GAGTCTAAGGATTGGAG-  1079

seq1  GTGAGCAGGACCCTTAGAGATGATC  1124
      ||||  | |||||||  ||||||||
seq2  GTGA--ACGACCCTT--AGATGATC  1100