BAC Information

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BAC

Clone NameB6Ng01-100P22
Chromosome6 (Build37)
Map Location 38,959,527 - 39,086,631
singlet/doubletdoublet
Overlap geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik
Upstream geneSvopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
Downstream geneA630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100P22.bB6Ng01-100P22.g
ACCDH910321DH910322
length1,0341,107
definitionDH910321|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P22, 5' end.DH910322|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,085,610 - 39,086,631)(38,959,527 - 38,960,632)
sequence
gaattctatatacaattctgacttgttgttccctttttctgaatctcaag
acactagaatgtagaaaactgttttgcattcttactatttctgaggattt
aaatgtgaaaagtaacatcttattatttcactagaggtaccactggggaa
gagtgatggccaagagggaagactgagtgactggtgagagatgagatgca
gagagaaatagatatgacggtttctctagtcttttttttttttttttttt
ttaaggactgtatgtagttctttaatggatggttattaagaacaggtgct
gttctgggcatcaacccagtgttgtagcaacggtattacagaagtagcaa
aagcaagcctaggcctcagagggcttctgtgtggtgggagagcaaggttc
aactacttattaagtgcagatcctaggagggaagttgggcttgattttgg
acagagagtctatgagacaggtcaaggatgataagggtaagttcttgcac
tggagagagggagtggagtcaaggaagaaaagaaccctcagtcagggctt
tcgtagggaagcctcagagaggcttttgcatctctgtgtaatgctatctt
tcagacagacagaaacctcaactgtaggaacttgtcttgagaaactcttt
gtacagctacacgatattctaatggccacctattacagtgaaataatgaa
cacatctcatctccacaaactcagcctgattttgtgggtctgggaaataa
gtcccaggagctgtaggtgtggcactccttcagatttagagggaagaccc
aaagctttgatataggatttggatcacaagttttccattacttaatcatg
catactcactatgtacagggaacaattttttatttctttccccacagtat
tctgatgtggtaggaactgctttatcctcttgtacaggtgaaaccagtgt
cttaattaaggttttactgcttgtgaacaaaacaccatgaagtctttcct
caaccagggagttccatgggcttctggcatctcc
gaattctctttctgtgggctcaaagagacagctaagaagcttgtactatg
tccttcagtcaatgaggatgctcagagcatttcagcaaaatgaatataca
aaacacaataattttagaagatgggtgccacgactgggtttcggggtgca
ttgggaagtaaaaagacaacaggctcttgggccggttggtttagaacata
catacaggtcagcttccggacttagatgtcaaaggtgcttaccctatgac
cttcgtcctcaagaggcagaatgacagcaacattccagtgacaaagtctg
aaccagaggaaggagggaaaggtgaagggacacaagcagcgttgacatag
tgagaccaaccacgagggaccaatggggagctgtctgcgaggaagaagag
atacagagaattcctgctgtccaaaccagcctggggttggattctccata
agacaggtgctatgtttggaccactcctgactactgctaggtgctttgca
tattttgtttctaactgtggttatggcacttcaaaggtggcattattttt
cttgttctgctggtgacaatataaagtcgctacatttaggccactggaaa
cgaattatgacgttccagggagtggagtcatagccactggcaatgacttt
gagtgcttgctcctcttggagccactggacattatccaagtcaaatcctt
ccccctcgaagaaaactgccaaaggtgggattccgtagagcatcaaaggt
gttgaagaatgcttctttgagaaggggaatgcctgaccttttcttggtcg
tctccctgtaaggtgcctcctctgtccactcctatgaattagactccaac
ccacctgctttctgcccacactattcttctgagacagcttggtcaattcc
tttggaaaacactgggcactgattgaatttatatattaaactcaggctag
caagacttccttccttggggacctttcttcctaaattgagggctttattt
cagcaacttacggttaccaaataatcacccagtctcactcttccaggaca
cccagggcttgctttctggaactgacattctggcccttagccacctcaag
actgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_39085610_39086631
seq2: B6Ng01-100P22.b_44_1077 (reverse)

seq1  GGAGATGCCAGA--GCCATGG-ACTCCCT-GTTGAGGAAAG-CTTCATGG  45
      ||||||||||||   |||||| ||||||| ||||||||||| ||||||||
seq2  GGAGATGCCAGAAGCCCATGGAACTCCCTGGTTGAGGAAAGACTTCATGG  50

seq1  TG-TTTGTTCAC-AGCAGTAAAACCTTAATTAAGACACTGGTTTCACCTG  93
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTCACAAGCAGTAAAACCTTAATTAAGACACTGGTTTCACCTG  100

seq1  TACAAGAGGATAAAGCAGTTCCTACCACATCAGAATACTGTGGGGAA--G  141
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TACAAGAGGATAAAGCAGTTCCTACCACATCAGAATACTGTGGGGAAAGA  150

seq1  AATAAAAA--TGTTCCCTGTACATAGTGAGTATGCATGATTAAGTAATGG  189
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATTGTTCCCTGTACATAGTGAGTATGCATGATTAAGTAATGG  200

seq1  -AAACTTGTGATCCAAATCCTATATCAAAGCTTTGGGTCTTCCCTCTAAA  238
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGTGATCCAAATCCTATATCAAAGCTTTGGGTCTTCCCTCTAAA  250

seq1  TCTGAAGGAGTGCCACACCTACAGCTCCTGGGACTTATTTCCCAGACCCA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGAGTGCCACACCTACAGCTCCTGGGACTTATTTCCCAGACCCA  300

seq1  CAAAATCAGGCTGAGTTTGTGGAGATGAGATGTGTTCATTATTTCACTGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAGGCTGAGTTTGTGGAGATGAGATGTGTTCATTATTTCACTGT  350

seq1  AATAGGTGGCCATTAGAATATCGTGTAGCTGTACAAAGAGTTTCTCAAGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGGCCATTAGAATATCGTGTAGCTGTACAAAGAGTTTCTCAAGA  400

seq1  CAAGTTCCTACAGTTGAGGTTTCTGTCTGTCTGAAAGATAGCATTACACA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCTACAGTTGAGGTTTCTGTCTGTCTGAAAGATAGCATTACACA  450

seq1  GAGATGCAAAAGCCTCTCTGAGGCTTCCCTACGAAAGCCCTGACTGAGGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAAAAGCCTCTCTGAGGCTTCCCTACGAAAGCCCTGACTGAGGG  500

seq1  TTCTTTTCTTCCTTGACTCCACTCCCTCTCTCCAGTGCAAGAACTTACCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTCCTTGACTCCACTCCCTCTCTCCAGTGCAAGAACTTACCC  550

seq1  TTATCATCCTTGACCTGTCTCATAGACTCTCTGTCCAAAATCAAGCCCAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCCTTGACCTGTCTCATAGACTCTCTGTCCAAAATCAAGCCCAA  600

seq1  CTTCCCTCCTAGGATCTGCACTTAATAAGTAGTTGAACCTTGCTCTCCCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCTAGGATCTGCACTTAATAAGTAGTTGAACCTTGCTCTCCCA  650

seq1  CCACACAGAAGCCCTCTGAGGCCTAGGCTTGCTTTTGCTACTTCTGTAAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGAAGCCCTCTGAGGCCTAGGCTTGCTTTTGCTACTTCTGTAAT  700

seq1  ACCGTTGCTACAACACTGGGTTGATGCCCAGAACAGCACCTGTTCTTAAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTGCTACAACACTGGGTTGATGCCCAGAACAGCACCTGTTCTTAAT  750

seq1  AACCATCCATTAAAGAACTACATACAGTCCTTAAAAAAAAAAAAAAAAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCATTAAAGAACTACATACAGTCCTTAAAAAAAAAAAAAAAAAA  800

seq1  AAAGACTAGAGAAACCGTCATATCTATTTCTCTCTGCATCTCATCTCTCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAGAGAAACCGTCATATCTATTTCTCTCTGCATCTCATCTCTCA  850

seq1  CCAGTCACTCAGTCTTCCCTCTTGGCCATCACTCTTCCCCAGTGGTACCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACTCAGTCTTCCCTCTTGGCCATCACTCTTCCCCAGTGGTACCT  900

seq1  CTAGTGAAATAATAAGATGTTACTTTTCACATTTAAATCCTCAGAAATAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAATAATAAGATGTTACTTTTCACATTTAAATCCTCAGAAATAG  950

seq1  TAAGAATGCAAAACAGTTTTCTACATTCTAGTGTCTTGAGATTCAGAAAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGCAAAACAGTTTTCTACATTCTAGTGTCTTGAGATTCAGAAAA  1000

seq1  AGGGAACAACAAGTCAGAATTGTATATAGAATTC  1022
      ||||||||||||||||||||||||||||||||||
seq2  AGGGAACAACAAGTCAGAATTGTATATAGAATTC  1034

seq1: chr6_38959527_38960632
seq2: B6Ng01-100P22.g_68_1174

seq1  GAATTCTCTTTCTGTGGGCTCAAAGAGACAGCTAAGAAGCTTGTACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTGTGGGCTCAAAGAGACAGCTAAGAAGCTTGTACTATG  50

seq1  TCCTTCAGTCAATGAGGATGCTCAGAGCATTTCAGCAAAATGAATATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGTCAATGAGGATGCTCAGAGCATTTCAGCAAAATGAATATACA  100

seq1  AAACACAATAATTTTAGAAGATGGGTGCCACGACTGGGTTTCGGGGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATAATTTTAGAAGATGGGTGCCACGACTGGGTTTCGGGGTGCA  150

seq1  TTGGGAAGTAAAAAGACAACAGGCTCTTGGGCCGGTTGGTTTAGAACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGTAAAAAGACAACAGGCTCTTGGGCCGGTTGGTTTAGAACATA  200

seq1  CATACAGGTCAGCTTCCGGACTTAGATGTCAAAGGTGCTTACCCTATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGTCAGCTTCCGGACTTAGATGTCAAAGGTGCTTACCCTATGAC  250

seq1  CTTCGTCCTCAAGAGGCAGAATGACAGCAACATTCCAGTGACAAAGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTCCTCAAGAGGCAGAATGACAGCAACATTCCAGTGACAAAGTCTG  300

seq1  AACCAGAGGAAGGAGGGAAAGGTGAAGGGACACAAGCAGCGTTGACATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGGAAGGAGGGAAAGGTGAAGGGACACAAGCAGCGTTGACATAG  350

seq1  TGAGACCAACCACGAGGGACCAATGGGGAGCTGTCTGCGAGGAAGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCAACCACGAGGGACCAATGGGGAGCTGTCTGCGAGGAAGAAGAG  400

seq1  ATACAGAGAATTCCTGCTGTCCAAACCAGCCTGGGGTTGGATTCTCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAATTCCTGCTGTCCAAACCAGCCTGGGGTTGGATTCTCCATA  450

seq1  AGACAGGTGCTATGTTTGGACCACTCCTGACTACTGCTAGGTGCTTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTGCTATGTTTGGACCACTCCTGACTACTGCTAGGTGCTTTGCA  500

seq1  TATTTTGTTTCTAACTGTGGTTATGGCACTTCAAAGGTGGCATTATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTCTAACTGTGGTTATGGCACTTCAAAGGTGGCATTATTTTT  550

seq1  CTTGTTCTGCTGGTGACAATATAAAGTCGCTACATTTAGGCCACTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGCTGGTGACAATATAAAGTCGCTACATTTAGGCCACTGGAAA  600

seq1  CGAATTATGACGTTCCAGGGAGTGGAGTCATAGCCACTGGCAATGACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTATGACGTTCCAGGGAGTGGAGTCATAGCCACTGGCAATGACTTT  650

seq1  GAGTGCTTGCTCCTCTTGGAGCCACTGGACATTATCCAAGTCAAATCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTGCTCCTCTTGGAGCCACTGGACATTATCCAAGTCAAATCCTT  700

seq1  CCCCCTCGAAGAAAACTGCCAAAGGTGGGATTCCGTAGAGCATCAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCGAAGAAAACTGCCAAAGGTGGGATTCCGTAGAGCATCAAAGGT  750

seq1  GTTGAAGAATGCTTCTTTGAGAAGGGGAATGCCTGACCTTTTCTTGGTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGAATGCTTCTTTGAGAAGGGGAATGCCTGACCTTTTCTTGGTCG  800

seq1  TCTCCCTGTAAGGTGCCTCCTCTGTCCACTCCTATGAATTAGACTCC-AC  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCCCTGTAAGGTGCCTCCTCTGTCCACTCCTATGAATTAGACTCCAAC  850

seq1  CCACCTGCTTTCTGCCCACACTATTCTTCTGAGACAGC-TGGTCAAATTC  898
      |||||||||||||||||||||||||||||||||||||| ||||||| | |
seq2  CCACCTGCTTTCTGCCCACACTATTCTTCTGAGACAGCTTGGTCAATTCC  900

seq1  TTTGGAAAACACTGGGCACTGATTGAATTTATATAATAAACTCCAGGCTA  948
      ||||||||||||||||||||||||||||||||||| |||||| |||||| 
seq2  TTTGGAAAACACTGGGCACTGATTGAATTTATATATTAAACT-CAGGCT-  948

seq1  AGCAAGAACTTCCTTCCTTGGGGAACTTTCTTCCTAAATTGAGGGCTTTA  998
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCAAG-ACTTCCTTCCTTGGGGACCTTTCTTCCTAAATTGAGGGCTTTA  997

seq1  TTTTCAGCAAC-TACGGTTACCAAATAATCACCCAGTCCCACTCTCCAGG  1047
       |||||||||| |||||||||||||||||||||||||| |||||| |  |
seq2  -TTTCAGCAACTTACGGTTACCAAATAATCACCCAGTCTCACTCTTCCAG  1046

seq1  GACAACACAGGCTTGGCTGCTGG-ACTGACATTCTGG-CCTTAGCCAACT  1095
      |||| |   ||||||  | |||| ||||||||||||| ||||||||| ||
seq2  GACACCCAGGGCTTGCTTTCTGGAACTGACATTCTGGCCCTTAGCCACCT  1096

seq1  CAAGACTGTAG  1106
      |||||||||||
seq2  CAAGACTGTAG  1107