BAC Information

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BAC

Clone NameB6Ng01-101A24
Chromosome6 (Build37)
Map Location 119,525,837 - 119,694,357
singlet/doubletdoublet
Overlap geneErc1
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101A24.bB6Ng01-101A24.g
ACCDH910368DH910369
length6731,007
definitionDH910368|Mus musculus domesticus DNA, BAC clone: B6Ng01-101A24, 5' end.DH910369|Mus musculus domesticus DNA, BAC clone: B6Ng01-101A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,525,837 - 119,526,509)(119,693,357 - 119,694,357)
sequence
gaattcatcaggaaagaaatgacaagcagagttgatgtccctgtatcaaa
aggaatgttcaaaacacacacattcctagactctcttcatgaaagtaagg
cccagaggagtcagtgctgagtccaaggctgcacactgtaacatccagtg
ctgacttcatgtggatggctgtgcccaggcgtccagactcacaggcctgg
gtgattgaggatctcaactttgtgtgaagctcttccacaaagatttccct
ttgctacaaacagctgtgtttctgtaggggcctcaggcagcttggttatt
ctgatagatatcctagcccactgctgaggagagacacacccccaatgtgc
tgttctcagttgccccggactgtcctcctctaactagcgtcaccagtgcc
ctgtgtgaggtctgaaaggccgaggagcgagaccctgtgctgaaactcct
tgtaggctgacagcaggacaagaacatcaacatgtaagtcacaacccagt
ccagtgcacacagaggcttgaggacatactgggagagaagacacatggtt
acttcactctgggccgtatgagaagccactaaaggtggtgaggatctggg
tcacttgggagatcagaggcagatcaaaggaacctcgggtaagctggatc
ctacagtgaggtgggggtggggg
gaattctttacggtaacaagaaaattacaagtaattgcttggaaattaat
tttaaattaaggaaattttagtatactcgaaagtttattgacattattgg
ctgcattttccaacagaaccctgaacaatatattgtcttagttcttagag
tgagtcttgctttttaccttctgattgtcagtcccaggtttcttgtaaaa
ttctgaattttttgctttagtaaaatacacttgagagtagctgtttctct
ttgtttgtttgtttatgttgttttcaaaacaacttactatgtagctttgg
ctgtcttggaactcactgtgtacatcaggctggctttgaaatcacagagc
tccacctgctccaagtactaggattaaagtgttagccatatgcccagtta
ggtttctgttctctttacctcgctccattttcccagcatcagttatatcc
gttgattctgaacagtgtaggtcatatgatttatgtgtttggtcaagcta
cgtaaagagaaggaaatgcggttagggcctattggactaagtctcaccgt
tgatataagaggagtgagatcaggattcagagccctcccatgccttcttc
attagtctcactctaaagcatcagttgggttatgatgattttgggcctca
taataaatattccaaggtaaaatagcattttaaaagaaatccatttgtaa
actactagtattttcactatgtgatccatgagtagagagaagccatttaa
atagttgataacactattggcattgaaatagaaatagttctttgggtgtg
gattacctacttccaatgttcggactttgaaaactttttttttttttttt
tttgggtagcgcatgaagcaacattgggaagccagagccagtccagagat
gagtgaccgaatacagcaattggagagagagatttccaggtacaaggatg
aatcagcaaggcccaacagagttgacgtctctgaaatctgaagagtgaaa
tgaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119525837_119526509
seq2: B6Ng01-101A24.b_45_717

seq1  GAATTCATCAGGAAAGAAATGACAAGCAGAGTTGATGTCCCTGTATCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGGAAAGAAATGACAAGCAGAGTTGATGTCCCTGTATCAAA  50

seq1  AGGAATGTTCAAAACACACACATTCCTAGACTCTCTTCATGAAAGTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTTCAAAACACACACATTCCTAGACTCTCTTCATGAAAGTAAGG  100

seq1  CCCAGAGGAGTCAGTGCTGAGTCCAAGGCTGCACACTGTAACATCCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGAGTCAGTGCTGAGTCCAAGGCTGCACACTGTAACATCCAGTG  150

seq1  CTGACTTCATGTGGATGGCTGTGCCCAGGCGTCCAGACTCACAGGCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCATGTGGATGGCTGTGCCCAGGCGTCCAGACTCACAGGCCTGG  200

seq1  GTGATTGAGGATCTCAACTTTGTGTGAAGCTCTTCCACAAAGATTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGAGGATCTCAACTTTGTGTGAAGCTCTTCCACAAAGATTTCCCT  250

seq1  TTGCTACAAACAGCTGTGTTTCTGTAGGGGCCTCAGGCAGCTTGGTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAAACAGCTGTGTTTCTGTAGGGGCCTCAGGCAGCTTGGTTATT  300

seq1  CTGATAGATATCCTAGCCCACTGCTGAGGAGAGACACACCCCCAATGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGATATCCTAGCCCACTGCTGAGGAGAGACACACCCCCAATGTGC  350

seq1  TGTTCTCAGTTGCCCCGGACTGTCCTCCTCTAACTAGCGTCACCAGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGTTGCCCCGGACTGTCCTCCTCTAACTAGCGTCACCAGTGCC  400

seq1  CTGTGTGAGGTCTGAAAGGCCGAGGAGCGAGACCCTGTGCTGAAACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGGTCTGAAAGGCCGAGGAGCGAGACCCTGTGCTGAAACTCCT  450

seq1  TGTAGGCTGACAGCAGGACAAGAACATCAACATGTAAGTCACAACCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTGACAGCAGGACAAGAACATCAACATGTAAGTCACAACCCAGT  500

seq1  CCAGTGCACACAGAGGCTTGAGGACATACTGGGAGAGAAGACACATGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCACACAGAGGCTTGAGGACATACTGGGAGAGAAGACACATGGTT  550

seq1  ACTTCACTCTGGGCCGTATGAGAAGCCACTAAAGGTGGTGAGGATCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTCTGGGCCGTATGAGAAGCCACTAAAGGTGGTGAGGATCTGGG  600

seq1  TCACTTGGGAGATCAGAGGCAGATCAAAGGAACCTCGGGTAAGCTGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGGAGATCAGAGGCAGATCAAAGGAACCTCGGGTAAGCTGGATC  650

seq1  CTACAGTGAGGTGGGGGTGGGGG  673
      |||||||||||||||||||||||
seq2  CTACAGTGAGGTGGGGGTGGGGG  673

seq1: chr6_119693357_119694357
seq2: B6Ng01-101A24.g_67_1073 (reverse)

seq1  TCTTTCA-----------AGATTTCCAAGAGACGGTCAACTTCTGTTTGG  39
      |||||||           |||||||  |||||| |||||| |||| ||||
seq2  TCTTTCATTTCACTCTTCAGATTTC--AGAGAC-GTCAAC-TCTG-TTGG  45

seq1  GCCTTGCTGGATTCATCTTTGTACCTGGAAATCTCTCTCTCCAATTGCTG  89
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  GCCTTGCT-GATTCATCCTTGTACCTGGAAATCTCTCTCTCCAATTGCTG  94

seq1  TATTCGGTCACTCATCTCTGGACTGGCTCTGGCTT-CCAATGTTGCTTCA  138
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTCGGTCACTCATCTCTGGACTGGCTCTGGCTTCCCAATGTTGCTTCA  144

seq1  TGCGCCTACCC-AAAAAAAAAAAAAAAAAAGTTTTCAAAGTCCGAACATT  187
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCG-CTACCCAAAAAAAAAAAAAAAAAAAGTTTTCAAAGTCCGAACATT  193

seq1  GGAAGTAGGTAATCCACACCCAAAGAACTATTTCTATTTCAATGCCAATA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGGTAATCCACACCCAAAGAACTATTTCTATTTCAATGCCAATA  243

seq1  GTGTTATCAACTATTTAAATGGCTTCTCTCTACTCATGGATCACATAGTG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATCAACTATTTAAATGGCTTCTCTCTACTCATGGATCACATAGTG  293

seq1  AAAATACTAGTAGTTTACAAATGGATTTCTTTTAAAATGCTATTTTACCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTAGTAGTTTACAAATGGATTTCTTTTAAAATGCTATTTTACCT  343

seq1  TGGAATATTTATTATGAGGCCCAAAATCATCATAACCCAACTGATGCTTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATTTATTATGAGGCCCAAAATCATCATAACCCAACTGATGCTTT  393

seq1  AGAGTGAGACTAATGAAGAAGGCATGGGAGGGCTCTGAATCCTGATCTCA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGACTAATGAAGAAGGCATGGGAGGGCTCTGAATCCTGATCTCA  443

seq1  CTCCTCTTATATCAACGGTGAGACTTAGTCCAATAGGCCCTAACCGCATT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTATATCAACGGTGAGACTTAGTCCAATAGGCCCTAACCGCATT  493

seq1  TCCTTCTCTTTACGTAGCTTGACCAAACACATAAATCATATGACCTACAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTTACGTAGCTTGACCAAACACATAAATCATATGACCTACAC  543

seq1  TGTTCAGAATCAACGGATATAACTGATGCTGGGAAAATGGAGCGAGGTAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAATCAACGGATATAACTGATGCTGGGAAAATGGAGCGAGGTAA  593

seq1  AGAGAACAGAAACCTAACTGGGCATATGGCTAACACTTTAATCCTAGTAC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAGAAACCTAACTGGGCATATGGCTAACACTTTAATCCTAGTAC  643

seq1  TTGGAGCAGGTGGAGCTCTGTGATTTCAAAGCCAGCCTGATGTACACAGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCAGGTGGAGCTCTGTGATTTCAAAGCCAGCCTGATGTACACAGT  693

seq1  GAGTTCCAAGACAGCCAAAGCTACATAGTAAGTTGTTTTGAAAACAACAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAAGACAGCCAAAGCTACATAGTAAGTTGTTTTGAAAACAACAT  743

seq1  AAACAAACAAACAAAGAGAAACAGCTACTCTCAAGTGTATTTTACTAAAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAAGAGAAACAGCTACTCTCAAGTGTATTTTACTAAAG  793

seq1  CAAAAAATTCAGAATTTTACAAGAAACCTGGGACTGACAATCAGAAGGTA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATTCAGAATTTTACAAGAAACCTGGGACTGACAATCAGAAGGTA  843

seq1  AAAAGCAAGACTCACTCTAAGAACTAAGACAATATATTGTTCAGGGTTCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGACTCACTCTAAGAACTAAGACAATATATTGTTCAGGGTTCT  893

seq1  GTTGGAAAATGCAGCCAATAATGTCAATAAACTTTCGAGTATACTAAAAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAAATGCAGCCAATAATGTCAATAAACTTTCGAGTATACTAAAAT  943

seq1  TTCCTTAATTTAAAATTAATTTCCAAGCAATTACTTGTAATTTTCTTGTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAATTTAAAATTAATTTCCAAGCAATTACTTGTAATTTTCTTGTT  993

seq1  ACCGTAAAGAATTC  1001
      ||||||||||||||
seq2  ACCGTAAAGAATTC  1007