BAC Information

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BAC

Clone NameB6Ng01-101F23
Chromosome6 (Build37)
Map Location 123,287,936 - 123,397,349
singlet/doubletdoublet
Overlap geneEG667180, LOC626436
Upstream gene1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358
Downstream geneEG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101F23.bB6Ng01-101F23.g
ACCDH910575DH910576
length1,1531,144
definitionDH910575|Mus musculus domesticus DNA, BAC clone: B6Ng01-101F23, 5' end.DH910576|Mus musculus domesticus DNA, BAC clone: B6Ng01-101F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,287,936 - 123,289,102)(123,396,191 - 123,397,349)
sequence
gaattccctgttttctagagtcagtttctctcttgacgctgtataccatc
atgttgcaagccaagcacagcactgagagatagatagagtgttttagggt
cagttcttggtggatggagggtatctcacatcctgtttggagcttatata
aaagattaagcaattgttcatcaaagatatgttgctaattaatattcata
cattcaagcattttgtaaacaggcagagtgtggaaatcactatttggtca
atggagactctctattattcagtaatttctcaaaagcaatgcatatctat
tacctgattatgatttataaatacatggagtcacaatatcatgaaatcac
atgaactgtttaaaaactttttattatataaataatctatttgtgcaatt
ttgcataagaaatattacaagagttaaagccacccttttccatttttcaa
caatttcaataaatgtaattctctggaggggagcctcattgtaagccttg
tgttaattctttgctctgtcataaatatcaattttcattcttaaattata
cattgttaaaattgtcagtttttagttatatataaatatggtattcttta
tatttactctggattattgcatttattaagcttcctttaggagtctacac
aagtagtggcataatttagctatattcagtcttttccaagaatgaatatt
aaatctttctatgtcaaattatgttaatcttcatgacataatttgggact
tttatcattttctattggaagtgaagtttctcctatttctgtattagttt
actgatatatatgcatatagattatctagaacttcattttataataatta
ttttagcaaaagatattcattgttaggacctactaaattacttctaaatt
atatttgaataactggggcctcaactctagtacctatctaaagatgcaat
ctgtacaatttacttagcctttgtcacactaaaatttttatcacatgaaa
tatgaatgattttttcctttttatttaagtacactgacatggtgaatatt
cagactatagcttgtactttttggcaatcctatggttcaacaatgataaa
aaatagttagtttttttttcagtcatctagatttctggcttcgcatatca
aga
gaattctaagagactcgaatgctaaagatatacgtagagacaatcatatc
gtctctctcacactatcaaataaaacataaaataaaatttaagagaagat
aagcattgaataatatttgttgttacattatgtgatgtatctaacagagg
ccaaaggggaaaaaatttccaaggatgaagccagagaacagccaaggaag
agaaaacattaatctagatattggagaagcctagaaaatcctacatggga
tgaaaaaactaaaatattttttatcattgttgaaccagagaatttcccaa
aaaagtataaactacaatctgattatgtacaatgtcaatgtaagttaaaa
taaaaagagatactatttcataatttcaatatgataaaatttaagactat
caaagattacacagcttgtacagattgcatattttagataggaactatgc
ttgaggcaccaattatcaaatataatttagaaaaataatttagacggtcc
tgaccaaaaaacatttttgctaaaataatgcttataaattgaaattctag
ataatttgtatgaatatataccagtaaattaatgtagaaatagaagaaat
ggggtgggctttaaaagagaaaaaagaaagaaaaaggagaagaaacttta
cttccaataggaaaatgataaaacttccaaattataccatgaagattaac
ataattttatatagagggatttggttttaaaccatagaaaagcctgaata
tagtttaattataccactacttgcataaactcctagaggagtcttaggaa
aggcaatcaatcaaagaaaatataaagtataccatatctatacatgactg
aaaacagataattttaacaatgtataatttaagaatagaaattgatattt
atgacagagcaaagaattaacacaaggctcacagtgagcttccctctgga
aactgcaataaagaacattcttgagacaaaaaaaaaagtatcatttacta
tgtatatttcttagcaaaattgcacaatagattatttaatgtatgaaagt
ttaaagagtacatgaacatattcctccatgtatttataaatcataatcaa
ttataagtggttttgatttgagagaatactggcatatgtatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_123287936_123289102
seq2: B6Ng01-101F23.b_48_1200

seq1  GAATTCCCTGTTTTCTAGAGTCAGTTTCTCTCTTGACGCTGTATACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTTTTCTAGAGTCAGTTTCTCTCTTGACGCTGTATACCATC  50

seq1  ATGTTGCAAGCCAAGCACAGCACTGAGAGATAGATAGAGTGTTTTAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAAGCCAAGCACAGCACTGAGAGATAGATAGAGTGTTTTAGGGT  100

seq1  CAGTTCTTGGTGGATGGAGGGTATCTCACATCCTGTTTGGAGCTTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTGGTGGATGGAGGGTATCTCACATCCTGTTTGGAGCTTATATA  150

seq1  AAAGATTAAGCAATTGTTCATCAAAGATATGTTGCTAATTAATATTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTAAGCAATTGTTCATCAAAGATATGTTGCTAATTAATATTCATA  200

seq1  CATTCAAGCATTTTGTAAACAGGCAGAGTGTGGAAATCACTATTTGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGCATTTTGTAAACAGGCAGAGTGTGGAAATCACTATTTGGTCA  250

seq1  ATGGAGACTCTCTATTATTCAGTAATTTCTCAAAAGCAATGCATATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACTCTCTATTATTCAGTAATTTCTCAAAAGCAATGCATATCTAT  300

seq1  TACCTGATTATGATTTATAAATACATGGAGTCACAATATCATGAAATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGATTATGATTTATAAATACATGGAGTCACAATATCATGAAATCAC  350

seq1  ATGAACTGTTTAAAAACTTTTTATTATATAAATAATCTATTTGTGCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGTTTAAAAACTTTTTATTATATAAATAATCTATTTGTGCAATT  400

seq1  TTGCATAAGAAATATTACAAGAGTTAAAGCCACCCTTTTCCATTTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAGAAATATTACAAGAGTTAAAGCCACCCTTTTCCATTTTTCAA  450

seq1  CAATTTCAATAAATGTAATTCTCTGGAGGGGAGCCTCATTGTAAGCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAATAAATGTAATTCTCTGGAGGGGAGCCTCATTGTAAGCCTTG  500

seq1  TGTTAATTCTTTGCTCTGTCATAAATATCAATTTTCATTCTTAAATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTCTTTGCTCTGTCATAAATATCAATTTTCATTCTTAAATTATA  550

seq1  CATTGTTAAAATTGTCAGTTTTTAGTTATATATAAATATGGTATTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTAAAATTGTCAGTTTTTAGTTATATATAAATATGGTATTCTTTA  600

seq1  TATTTACTCTGGATTATTGCATTTATTAAGCTTCCTTTAGGAGTCTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTCTGGATTATTGCATTTATTAAGCTTCCTTTAGGAGTCTACAC  650

seq1  AAGTAGTGGCATAATTTAGCTATATTCAGTCTTTTCCAAGAATGAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTGGCATAATTTAGCTATATTCAGTCTTTTCCAAGAATGAATATT  700

seq1  AAATCTTTCTATGTCAAATTATGTTAATCTTCATGACATAATTTGGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTCTATGTCAAATTATGTTAATCTTCATGACATAATTTGGGACT  750

seq1  TTTATCATTTTCTATTGGAAGTGAAGTTTCTCCTATTTCTGTATTAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTTTCTATTGGAAGTGAAGTTTCTCCTATTTCTGTATTAGTTT  800

seq1  ACTGATATATATGCATATAGATTATCTAGAACTTCATTTTATAATAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATATATGCATATAGATTATCTAGAACTTCATTTTATAATAATTA  850

seq1  TTTTAGCAAAAGATATTCATTTGTTAGGACCTACTAAATTACTTTCTAAA  900
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  TTTTAGCAAAAGATATTCA-TTGTTAGGACCTACTAAATTAC-TTCTAAA  898

seq1  TTATATTTGAATAACTGGGGCCTCAACTCTAGTACCTATCTAAAAGATGC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTATATTTGAATAACTGGGGCCTCAACTCTAGTACCTATCT-AAAGATGC  947

seq1  AATCTGTACAAATTACTTAGCCTTTGTCACACTTAAA-TTTTATCACATT  999
      ||||||||||| ||||||||||||||||||||| ||| |||||||||| |
seq2  AATCTGTACAATTTACTTAGCCTTTGTCACACTAAAATTTTTATCACA-T  996

seq1  GAAATTATGAAATGA-TTTCTCCTTTTATTTTAAGTTACACTGACATGGT  1048
      |||| |||| ||||| ||| |||||||  |||||| ||||||||||||||
seq2  GAAA-TATG-AATGATTTTTTCCTTTTTATTTAAG-TACACTGACATGGT  1043

seq1  GAATAATCAGACTATAGTTTGTACTTTTTGGGAAATCCTATGGTTCAACA  1098
      ||||| ||||||||||| ||||||||||| || |||||||||||||||||
seq2  GAATATTCAGACTATAGCTTGTACTTTTT-GGCAATCCTATGGTTCAACA  1092

seq1  ATGATAAAAAATAGTTTAGTTTTTTTTTTCATTTCATCTAGAATTTTCTG  1148
      |||||||||||||| |||| |||||||||||  |||||||||  ||||| 
seq2  ATGATAAAAAATAG-TTAG-TTTTTTTTTCA-GTCATCTAGA--TTTCT-  1136

seq1  GGCTTCGTCAATATCAAGA  1167
      |||||||   |||||||||
seq2  GGCTTCG--CATATCAAGA  1153

seq1: chr6_123396191_123397349
seq2: B6Ng01-101F23.g_68_1211 (reverse)

seq1  AATATACATTATCCAGTAATCTCTCAAAATCAAAACAAATTTATTATTGA  50
      |||||||||   |||||| |||||| ||||||||||  | |||| |||| 
seq2  AATATACATATGCCAGTATTCTCTC-AAATCAAAAC-CACTTATAATTG-  47

seq1  ATTATGATTTATAAATACATGGAGGAATAATGTCATGTACTCTTTAAAAC  100
      |||||||||||||||||||||||||||||   ||||||||||||||||  
seq2  ATTATGATTTATAAATACATGGAGGAATATGTTCATGTACTCTTTAAA--  95

seq1  TTTTCATTACA-TAAATAATCTATTTGTGCAATTTTGCTTAAGAAATATT  149
       ||||| |||| ||||||||||| |||||||||||||| ||||||||| |
seq2  CTTTCA-TACATTAAATAATCTA-TTGTGCAATTTTGC-TAAGAAATA-T  141

seq1  ACAATAGTAAATGATACTTTTTTTTTTGTTCCTCAAGAATGTTCCTTTTA  199
      || ||||||||||||||||||||||||||  |||||||||||||  ||||
seq2  AC-ATAGTAAATGATACTTTTTTTTTTGT--CTCAAGAATGTTC--TTTA  186

seq1  TTGCAGTTTTCCAGAGGGAAGCCTCACTGTGAGCCTTGTGTTAATTCTTT  249
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGCAG-TTTCCAGAGGGAAG-CTCACTGTGAGCCTTGTGTTAATTCTTT  234

seq1  GCTCTGTCATAAATATCAATTTCTATTCTTAAATTATACATTGTTAAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCATAAATATCAATTTCTATTCTTAAATTATACATTGTTAAAAT  284

seq1  TATCTGTTTTCAGTCATGTATAGATATGGTATACTTTATATTTTCTTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTTCAGTCATGTATAGATATGGTATACTTTATATTTTCTTTGA  334

seq1  TTGATTGCCTTTCCTAAGACTCCTCTAGGAGTTTATGCAAGTAGTGGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCCTTTCCTAAGACTCCTCTAGGAGTTTATGCAAGTAGTGGTAT  384

seq1  AATTAAACTATATTCAGGCTTTTCTATGGTTTAAAACCAAATCCCTCTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACTATATTCAGGCTTTTCTATGGTTTAAAACCAAATCCCTCTAT  434

seq1  ATAAAATTATGTTAATCTTCATGGTATAATTTGGAAGTTTTATCATTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATGTTAATCTTCATGGTATAATTTGGAAGTTTTATCATTTTC  484

seq1  CTATTGGAAGTAAAGTTTCTTCTCCTTTTTCTTTCTTTTTTCTCTTTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAAGTAAAGTTTCTTCTCCTTTTTCTTTCTTTTTTCTCTTTTAA  534

seq1  AGCCCACCCCATTTCTTCTATTTCTACATTAATTTACTGGTATATATTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACCCCATTTCTTCTATTTCTACATTAATTTACTGGTATATATTCA  584

seq1  TACAAATTATCTAGAATTTCAATTTATAAGCATTATTTTAGCAAAAATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTATCTAGAATTTCAATTTATAAGCATTATTTTAGCAAAAATGT  634

seq1  TTTTTGGTCAGGACCGTCTAAATTATTTTTCTAAATTATATTTGATAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTCAGGACCGTCTAAATTATTTTTCTAAATTATATTTGATAATT  684

seq1  GGTGCCTCAAGCATAGTTCCTATCTAAAATATGCAATCTGTACAAGCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTCAAGCATAGTTCCTATCTAAAATATGCAATCTGTACAAGCTGT  734

seq1  GTAATCTTTGATAGTCTTAAATTTTATCATATTGAAATTATGAAATAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTTTGATAGTCTTAAATTTTATCATATTGAAATTATGAAATAGTA  784

seq1  TCTCTTTTTATTTTAACTTACATTGACATTGTACATAATCAGATTGTAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTATTTTAACTTACATTGACATTGTACATAATCAGATTGTAGT  834

seq1  TTATACTTTTTTGGGAAATTCTCTGGTTCAACAATGATAAAAAATATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTTTTTGGGAAATTCTCTGGTTCAACAATGATAAAAAATATTTT  884

seq1  AGTTTTTTCATCCCATGTAGGATTTTCTAGGCTTCTCCAATATCTAGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTCATCCCATGTAGGATTTTCTAGGCTTCTCCAATATCTAGATT  934

seq1  AATGTTTTCTCTTCCTTGGCTGTTCTCTGGCTTCATCCTTGGAAATTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCTCTTCCTTGGCTGTTCTCTGGCTTCATCCTTGGAAATTTTT  984

seq1  TCCCCTTTGGCCTCTGTTAGATACATCACATAATGTAACAACAAATATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTGGCCTCTGTTAGATACATCACATAATGTAACAACAAATATTA  1034

seq1  TTCAATGCTTATCTTCTCTTAAATTTTATTTTATGTTTTATTTGATAGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCTTATCTTCTCTTAAATTTTATTTTATGTTTTATTTGATAGTG  1084

seq1  TGAGAGAGACGATATGATTGTCTCTACGTATATCTTTAGCATTCGAGTCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGACGATATGATTGTCTCTACGTATATCTTTAGCATTCGAGTCT  1134

seq1  CTTAGAATTC  1159
      ||||||||||
seq2  CTTAGAATTC  1144