BAC Information

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BAC

Clone NameB6Ng01-101O10
Chromosome6 (Build37)
Map Location 4,251,069 - 4,385,785
singlet/doubletdoublet
Overlap geneLOC667381, LOC100039965
Upstream geneEG667335, Samd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1
Downstream geneCol1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101O10.bB6Ng01-101O10.g
ACCDH910948DH910949
length1,0951,103
definitionDH910948|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O10, 5' end.DH910949|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,384,671 - 4,385,785)(4,251,069 - 4,252,185)
sequence
gaattcaggccctcaggcttcatggtaggcatctctacctggtgagccat
ctcagtaccccagcagtttttgctggtgggaaaatagagtgttgactttt
ggaggtgaagacccatgatttgtgtatgaaaagcagcgtttattcttgtt
ctcatacatatgaacctccagtgtgtgtttaatggatgggtgccaaagag
catggtagaagacagagaatcaaaggcatgtgtgtgacaccatttgccaa
gtagttcccaggtgtccatcttgataaacaagaagaaaaaggatgctgtc
tatgccttctcttggattcaaattctcacatgactgaagtgaccattatt
ttgactcctggaggatcagcagtctcttactctcttagtagctgctttct
acttacttattcatttgttttcacgcagcagtggacagagggcataaatg
agaaataaagaatctcatcaacaatcagattttgaaaccgttttcttttt
tttttcttctcttgttttgttttgcaagaagctacaactaggaatggttc
acaagacacttcaacgtatcttgatataaccatactctggatacattaag
cttttagcataattaggtctacaattaaaaactagtaatagttttagggt
actaagaaaatggatgtctgatgaaccatcatgttttgtttgcacaatat
cacatccttctctttcctgctctttctagacaaggtctcattatgttgct
caagttggccttgaaccttgtgccaaacctactgagggcagaaataacag
gagtacctcgctccctctgtcttcacagcatcccctttcatcttaagaaa
tcatcattgtgccaattctgtaaaggatacctatatacgttctcctgaca
gtatcatcatgttttatgactgattatcacagtggttcttttttttttct
ggcaataagattggttcacccctgagtatgatgatagccagtgtttccgt
cagttttaaacaacggattccagaagaggcacttttcttgcgacataatt
gagatgagtcattgagctgtttaggtctacctagttagcttcttt
gaattcctgcaaataatatgcatgcttcatgaacatatatgtgttcagat
atatccatattcacacagcactctgtatagcattttccttcctcatcgtc
gtgtcacatgagagatcttcgtgagcatatatgtgttcagatatatccat
attcacacagcactctgtatagcatctttctccctcatggtggtgtcaca
tgagagaagctttacataaggtgagatatgtaattatcatttgttcttag
cagcccctaacataacatttttcaagcaatctaaaagattgcacatagac
cacatttaatattaatataaccctttgcctctacacagttaagattaaat
cactagttttattttctgctctgtcctattaaaattcactcgataacgga
acatcattttattgagttattttctttttaattgtaatttacatacaagt
aggcgaaatgtgtgctgtggaagactctataaaacgcctgagacagtaaa
tacgcacatccttacccaggatttactctgaagatctgtggcaaacagaa
agagtgtgtgataggcacaggatgagtctctggcacttcacaccaaccca
cacagggttagaaagggcctctgccctgccctgccacctctgcatccctg
ccttcagcccttgcctttctaatgaactgtaagaaacttcctgtggagac
tgcttctagttatagtcttttttgtccccatggtaacggtgaaaatgaaa
agaaagcaagaggtcaccactaggagtcaactagaatggaagaaattatt
ttctgctgatgaatctttttttttccgtgctcctgaacttccctatcctt
tctgtaagaatactattttctttactgtaaaagcaagattcctgacagca
acatcccttgcaattgggttgggggtggggatatccagactcaaagcatt
tatgtggaccattttatttttctataagtgtaaacttagagtggtttaat
ttcttcttaaaaacaaacaaagaacaaacaacaaatatttttcagcattt
aatgggcaatttggaaatgtattttcctcactgaaaaatatgtgatagaa
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_4384671_4385785
seq2: B6Ng01-101O10.b_48_1142 (reverse)

seq1  AAAGAAGCTAAACTTAGGGTTAGACTATAAACAGCTACAATTGACTTCAT  50
      |||||||||||   ||||  |||||  ||||||||| ||| |||| ||||
seq2  AAAGAAGCTAA--CTAGG--TAGAC-CTAAACAGCT-CAA-TGAC-TCAT  42

seq1  CTCAATTTAATGGTCGCAAGGAAAAAGTGCCTCTCTCTGGGATTCCGTGT  100
      |||||||  || ||||||||  |||||||||||| ||||| || |  |||
seq2  CTCAATT--AT-GTCGCAAG--AAAAGTGCCTCT-TCTGGAATCCGTTGT  86

seq1  GTAAAACCTGACGGGAACACTGGCTATCAACCAATACTCAGGGGTTGAAC  150
       ||||| ||||||| |||||||||||||| |  ||||||||||| |||||
seq2  TTAAAA-CTGACGGAAACACTGGCTATCATC--ATACTCAGGGG-TGAAC  132

seq1  CAATCCTTATTGCCAAGAAAAAAAAAGAACCACTGTGATTAATCAGTCAT  200
      |||| ||||||||||  ||||||||||||||||||||| |||||||||||
seq2  CAAT-CTTATTGCCAGAAAAAAAAAAGAACCACTGTGA-TAATCAGTCAT  180

seq1  -AAACATGATGATACTGTCAGGAGAACCGTATATAGGTATCCTTTACAGA  249
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAACATGATGATACTGTCAGGAGAA-CGTATATAGGTATCCTTTACAGA  229

seq1  ATTGGCACAATGATGATTTCTTAAGATGAAAGGGGATGCTGTGAAGACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACAATGATGATTTCTTAAGATGAAAGGGGATGCTGTGAAGACAG  279

seq1  AGGGAGCGAGGTACTCCTGTTATTTCTGCCCTCAGTAGGTTTGGCACAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCGAGGTACTCCTGTTATTTCTGCCCTCAGTAGGTTTGGCACAAG  329

seq1  GTTCAAGGCCAACCTGAGCAACATAATGAGACCTTGTCTAGAAAGAGCAG  399
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAACTTGAGCAACATAATGAGACCTTGTCTAGAAAGAGCAG  379

seq1  GAAAGAGAAGGATGTGATATTGTGCAAACAAAACATGATGGTTCATCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAGGATGTGATATTGTGCAAACAAAACATGATGGTTCATCAGA  429

seq1  CATCCATTTTCTTAGTACCCTAAAACTATTACTAGTTTTTAATTGTAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTTTCTTAGTACCCTAAAACTATTACTAGTTTTTAATTGTAGAC  479

seq1  CTAATTATGCTAAAAGCTTAATGTATCCAGAGTATGGTTATATCAAGATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATGCTAAAAGCTTAATGTATCCAGAGTATGGTTATATCAAGATA  529

seq1  CGTTGAAGTGTCTTGTGAACCATTCCTAGTTGTAGCTTCTTGCAAAACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAAGTGTCTTGTGAACCATTCCTAGTTGTAGCTTCTTGCAAAACAA  579

seq1  AACAAGAGAAGAAAAAAAAAAGAAAACGGTTTCAAAATCTGATTGTTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGAAGAAAAAAAAAAGAAAACGGTTTCAAAATCTGATTGTTGAT  629

seq1  GAGATTCTTTATTTCTCATTTATGCCCTCTGTCCACTGCTGCGTGAAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTTTATTTCTCATTTATGCCCTCTGTCCACTGCTGCGTGAAAAC  679

seq1  AAATGAATAAGTAAGTAGAAAGCAGCTACTAAGAGAGTAAGAGACTGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATAAGTAAGTAGAAAGCAGCTACTAAGAGAGTAAGAGACTGCTG  729

seq1  ATCCTCCAGGAGTCAAAATAATGGTCACTTCAGTCATGTGAGAATTTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCAGGAGTCAAAATAATGGTCACTTCAGTCATGTGAGAATTTGAA  779

seq1  TCCAAGAGAAGGCATAGACAGCATCCTTTTTCTTCTTGTTTATCAAGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGAAGGCATAGACAGCATCCTTTTTCTTCTTGTTTATCAAGATG  829

seq1  GACACCTGGGAACTACTTGGCAAATGGTGTCACACACATGCCTTTGATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGGGAACTACTTGGCAAATGGTGTCACACACATGCCTTTGATTC  879

seq1  TCTGTCTTCTACCATGCTCTTTGGCACCCATCCATTAAACACACACTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCTACCATGCTCTTTGGCACCCATCCATTAAACACACACTGGA  929

seq1  GGTTCATATGTATGAGAACAAGAATAAACGCTGCTTTTCATACACAAATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATATGTATGAGAACAAGAATAAACGCTGCTTTTCATACACAAATC  979

seq1  ATGGGTCTTCACCTCCAAAAGTCAACACTCTATTTTCCCACCAGCAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTTCACCTCCAAAAGTCAACACTCTATTTTCCCACCAGCAAAAA  1029

seq1  CTGCTGGGGTACTGAGATGGCTCACCAGGTAGAGATGCCTACCATGAAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGGTACTGAGATGGCTCACCAGGTAGAGATGCCTACCATGAAGC  1079

seq1  CTGAGGGCCTGAATTC  1115
      ||||||||||||||||
seq2  CTGAGGGCCTGAATTC  1095

seq1: chr6_4251069_4252185
seq2: B6Ng01-101O10.g_73_1175

seq1  GAATTCCTGCAAATAATATGCATGCTTCATGAACATATATGTGTTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAAATAATATGCATGCTTCATGAACATATATGTGTTCAGAT  50

seq1  ATATCCATATTCACACAGCACTCTGTATAGCATTTTCCTTCCTCATCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATATTCACACAGCACTCTGTATAGCATTTTCCTTCCTCATCGTC  100

seq1  GTGTCACATGAGAGATCTTCGTGAGCATATATGTGTTCAGATATATCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACATGAGAGATCTTCGTGAGCATATATGTGTTCAGATATATCCAT  150

seq1  ATTCACACAGCACTCTGTATAGCATCTTTCTCCCTCATGGTGGTGTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACAGCACTCTGTATAGCATCTTTCTCCCTCATGGTGGTGTCACA  200

seq1  TGAGAGAAGCTTTACATAAGGTGAGATATGTAATTATCATTTGTTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAGCTTTACATAAGGTGAGATATGTAATTATCATTTGTTCTTAG  250

seq1  CAGCCCCTAACATAACATTTTTCAAGCAATCTAAAAGATTGCACATAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTAACATAACATTTTTCAAGCAATCTAAAAGATTGCACATAGAC  300

seq1  CACATTTAATATTAATATAACCCTTTGCCTCTACACAGTTAAGATTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAATATTAATATAACCCTTTGCCTCTACACAGTTAAGATTAAAT  350

seq1  CACTAGTTTTATTTTCTGCTCTGTCCTATTAAAATTCACTCGATAACGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTTTTATTTTCTGCTCTGTCCTATTAAAATTCACTCGATAACGGA  400

seq1  ACATCATTTTATTGAGTTATTTTCTTTTTAATTGTAATTTACATACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTTTATTGAGTTATTTTCTTTTTAATTGTAATTTACATACAAGT  450

seq1  AGGCGAAATGTGTGCTGTGGAAGACTCTATAAAACGCCTGAGACAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAAATGTGTGCTGTGGAAGACTCTATAAAACGCCTGAGACAGTAAA  500

seq1  TACGCACATCCTTACCCAGGATTTACTCTGAAGATCTGTGGCAAACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCACATCCTTACCCAGGATTTACTCTGAAGATCTGTGGCAAACAGAA  550

seq1  AGAGTGTGTGATAGGCACAGGATGAGTCTCTGGCACTTCACACCAACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGTGATAGGCACAGGATGAGTCTCTGGCACTTCACACCAACCCA  600

seq1  CACAGGGTTAGAAAGGGCCTCTGCCCTGCCCTGCCACCTCTGCATCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTTAGAAAGGGCCTCTGCCCTGCCCTGCCACCTCTGCATCCCTG  650

seq1  CCTTCAGCCCTTGCCTTTCTAATGAACTGTAAGAAACTTCCTGTGGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCCCTTGCCTTTCTAATGAACTGTAAGAAACTTCCTGTGGAGAC  700

seq1  TGCTTCTAGTTATAGTC-TTTTTGTCCCCATGGTAACGGTGAAAATGAAA  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCTTCTAGTTATAGTCTTTTTTGTCCCCATGGTAACGGTGAAAATGAAA  750

seq1  AGAAAGCAAGAGGTCACCACTAGGAGTCAACTAGAATGGAAGAAATTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAAGAGGTCACCACTAGGAGTCAACTAGAATGGAAGAAATTATT  800

seq1  TTCTGCTGATGAATCTTTTTTTTTCCGTGCTCCTGAACTTCCCTATCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGATGAATCTTTTTTTTTCCGTGCTCCTGAACTTCCCTATCCTT  850

seq1  TCTGTAAGAAATACTATTTTCTTTACTGTAAAAGCAAGATTCCTGACAGC  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAG-AATACTATTTTCTTTACTGTAAAAGCAAGATTCCTGACAGC  899

seq1  AACATCCCTTGCAATTGGGTTGGGGGTGGGGATAATCCAGACTCAAAGCA  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACATCCCTTGCAATTGGGTTGGGGGTGGGGAT-ATCCAGACTCAAAGCA  948

seq1  TTTATGT-GACCATTTTATTTTTCTAATAAGTGTAAACTTAGAGTGGTTT  998
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTATGTGGACCATTTTATTTTTCT-ATAAGTGTAAACTTAGAGTGGTTT  997

seq1  TATTTCTTCTTTAAAAAACAAACAAACAAACAAACAAACAAACATATTTT  1048
       ||||||||||  |||||||||||||  ||||||| |||||  |||||||
seq2  AATTTCTTCTT--AAAAACAAACAAA-GAACAAAC-AACAA--ATATTTT  1041

seq1  TCCAGCATTTAAATGGGCAATTTTGGAAATGTATTTTTCTCACTAAAATA  1098
      | |||||||| ||||||||| |||||||||||||||| |||||| ||| |
seq2  T-CAGCATTT-AATGGGCAA-TTTGGAAATGTATTTTCCTCACTGAAA-A  1087

seq1  ATATGTGTATATAGAATCT  1117
      |||||||   |||||||||
seq2  ATATGTG---ATAGAATCT  1103