BAC Information

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BAC

Clone NameB6Ng01-102B12
Chromosome6 (Build37)
Map Location 108,198,003 - 108,325,620
singlet/doubletdoublet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102B12.bB6Ng01-102B12.g
ACCDH911082DH911083
length958992
definitionDH911082|Mus musculus domesticus DNA, BAC clone: B6Ng01-102B12, 5' end.DH911083|Mus musculus domesticus DNA, BAC clone: B6Ng01-102B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,198,003 - 108,198,961)(108,324,629 - 108,325,620)
sequence
gaattctctgggaaggcatctgttcccacaccacagcagttatatatgca
aggggaagagagccggcagagtactttcctatgggacgggggcagagtag
atgatgctctacatatgtgccttctctctggctctgcagcacctccccag
atcaggacacatctgtttcatacctaatgctatttgggttaacagatgtt
aggaactggtccagtgtcatgtcacgcctgaatgccagagtcctgagggc
tgaccctgtcctttcccaccatttgccctatagattgtcttaaacccctg
gcctgagggttctgtaagggcatggcctttgtcactggcatagcttctaa
ttgagactagacaaaatgttacttctctgttcttgaattctacctagctt
ttattcagacttatttcaatgaaaagctaagaaggaaggaaaaaagaagg
aagggagggagggagggagggaggcaggcaggcaggcaagcaggacggca
ggcaggctcgcccgcaggcaggctggctggctggctgccttggacccttt
gtttcaatgaatcttcagctgttcccaacgataactcaggaatatgcata
atgtccacctgattgggacatgattgtggagccattaacggtctaccccg
aagaagtgtcaccagtgactgaacttgctgagttgggagtgagcccaaat
tctattgttcctcaccttgtgcgtcaagacactacaacctgctagtctag
accctccccttgtgcattccataagcactgcattcctctggggactcgga
ctgagaccaagtgcacatctatggattggaattctaaacctctggcctat
tttcttttaccggacgttgctctccttttctggaggcaagctcaaggtgg
tccctctctgaggtgttctccagattgacttggatgtctcaatgggggaa
ggactgaa
gaattccactaggatcatgcaaagtagctgatggtttcatgtatggaata
tcacatgttacgtgtgtgcccagagacctgttggaacctacatgacccaa
aatcttaagtgccaccaattccctctggataattgaattgcacatagttg
ctacttgcttctttgtcttctatgtggcctaaaaattattttatgtttgt
ttctttatttgatggtcacaaattgtggtgtttaaaacatttttcaactc
tgcttcacttctaaagtagcagaaaacaatggaaaaagtattgcccttca
agaactccctgttgcattaataagacaagatgacagcgcatcaagcaagc
agaaacaacaggaaacgggcactagaaagcatgtggttcagagacagttg
agggggactcagaatcctgaaagcattgacacagaaaacagatgactgga
ctataacttgacactggtgtgctagaggcaagcacgatagtggaaaacat
tcaaagtaagagtaccttaggaccaaagaagaccatgccccattcgtggg
gaagagactaagctaaaccttcattagaccttagctttctttgctgtaac
tcccctccacattctaaagccagaagacggaagccctacctaatattatt
tactttgatcagcatgaattagacaacgtggacaagatattaaacatagg
catttgtagtgttctacttgagttttattcattttctggattttcagagg
gtaaccaaagctttggagcatagttttcgctggataattatattccatag
agttcaataacaaatgccatcaaagacacaaagtacattcaatctattct
tctgaagttgaagatttcacaatacttaactcaaaagctcatgttgtcgg
gacaagtacacaaaactcatacaagtttcatactccccaatgctcacata
aatatcaaactatgtgtgtattgtagttttatatctggctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108198003_108198961
seq2: B6Ng01-102B12.b_43_1000

seq1  GAATTCTCTGGGAAGGCATCTGTTCCCACACCACAGCAGTTATATATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGAAGGCATCTGTTCCCACACCACAGCAGTTATATATGCA  50

seq1  AGGGGAAGAGAGCCGGCAGAGTACTTTCCTATGGGACGGGGGCAGAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGAGAGCCGGCAGAGTACTTTCCTATGGGACGGGGGCAGAGTAG  100

seq1  ATGATGCTCTACATATGTGCCTTCTCTCTGGCTCTGCAGCACCTCCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTCTACATATGTGCCTTCTCTCTGGCTCTGCAGCACCTCCCCAG  150

seq1  ATCAGGACACATCTGTTTCATACCTAATGCTATTTGGGTTAACAGATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGACACATCTGTTTCATACCTAATGCTATTTGGGTTAACAGATGTT  200

seq1  AGGAACTGGTCCAGTGTCATGTCACGCCTGAATGCCAGAGTCCTGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGTCCAGTGTCATGTCACGCCTGAATGCCAGAGTCCTGAGGGC  250

seq1  TGACCCTGTCCTTTCCCACCATTTGCCCTATAGATTGTCTTAAACCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGTCCTTTCCCACCATTTGCCCTATAGATTGTCTTAAACCCCTG  300

seq1  GCCTGAGGGTTCTGTAAGGGCATGGCCTTTGTCACTGGCATAGCTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGGTTCTGTAAGGGCATGGCCTTTGTCACTGGCATAGCTTCTAA  350

seq1  TTGAGACTAGACAAAATGTTACTTCTCTGTTCTTGAATTCTACCTAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTAGACAAAATGTTACTTCTCTGTTCTTGAATTCTACCTAGCTT  400

seq1  TTATTCAGACTTATTTCAATGAAAAGCTAAGAAGGAAGGAAAAAAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGACTTATTTCAATGAAAAGCTAAGAAGGAAGGAAAAAAGAAGG  450

seq1  AAGGGAGGGAGGGAGGGAGGGAGGCAGGCAGGCAGGCAGGCAGGCAGGCA  500
      |||||||||||||||||||||||||||||||||||||| |||||  ||||
seq2  AAGGGAGGGAGGGAGGGAGGGAGGCAGGCAGGCAGGCAAGCAGGACGGCA  500

seq1  GGCAGGCAGGCAGGCAGGCAGGCTGGCTGGCTGGCTGCCTTGGACCCTTT  550
      |||||||  ||  |||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTCGCCCGCAGGCAGGCTGGCTGGCTGGCTGCCTTGGACCCTTT  550

seq1  GTTACAATGAATCTTCAGCTGTTCCCAACACTAGCTCAGGAATATGCATA  600
      ||| |||||||||||||||||||||||||  || ||||||||||||||||
seq2  GTTTCAATGAATCTTCAGCTGTTCCCAACGATAACTCAGGAATATGCATA  600

seq1  ATGTCCACATGATTGGGACATGTTTGTGGAGCCATTAAGGGTCTAGCCCA  650
      |||||||| ||||||||||||| ||||||||||||||| |||||| ||| 
seq2  ATGTCCACCTGATTGGGACATGATTGTGGAGCCATTAACGGTCTACCCCG  650

seq1  AGGCAGTGTAACCAGTGTCTGAGCATTTCAAGTTGGGTGTGAGCTGAAAG  700
      | | ||||| ||||||| |||| | |    ||||||| ||||||  ||| 
seq2  AAGAAGTGTCACCAGTGACTGAACTTGCTGAGTTGGGAGTGAGCCCAAAT  700

seq1  TCTCTGGTTCCTCAGCCTGGGCTCCGAGACACGACAGCCTGCGAGTCTAG  750
      ||| | |||||||| | || ||  | |||||| ||| ||||| |||||||
seq2  TCTATTGTTCCTCACCTTGTGCGTCAAGACACTACAACCTGCTAGTCTAG  750

seq1  -CTCTTGCAATGAGCATGGGAGAAGCGTTACTTTCCTCT-GTGAGTTGGA  798
       | ||  |  || ||||   | ||||  | | ||||||| | || | |||
seq2  ACCCTCCCCTTGTGCATTCCATAAGCACTGCATTCCTCTGGGGACTCGGA  800

seq1  CTGAGGCCCAGTGCATAGCTATGGATTTGAGGGCTAAGCCTCTGGCCTTT  848
      ||||| || |||||| | ||||||||| ||   |||| |||||||||| |
seq2  CTGAGACCAAGTGCACATCTATGGATTGGAATTCTAAACCTCTGGCCTAT  850

seq1  TTCCTTTTGCCAGACCTTTGTTCTCCTTTTCTAGAGTGCTTGCAGAATGT  898
      || ||||| || || | ||| ||||||||||| ||| ||  ||  || ||
seq2  TTTCTTTTACCGGA-CGTTGCTCTCCTTTTCTGGAG-GCAAGCTCAAGGT  898

seq1  CAGTCCCTCTCTGAGGGGTCTTGGAGATTTAATAAGCTGTCTTAATGGGG  948
        |||||||||||||| ||  |  ||||| | |  | ||||| |||||||
seq2  -GGTCCCTCTCTGAGGTGTTCTCCAGATTGACTTGGATGTCTCAATGGGG  947

seq1  GAAGGACTGAA  959
      |||||||||||
seq2  GAAGGACTGAA  958

seq1: chr6_108324629_108325620
seq2: B6Ng01-102B12.g_66_1057 (reverse)

seq1  TGAGCCAGATAATAAAACTACAATACACACATAGTTAGATATTTTAAGTG  50
      |||||||||| ||||||||||||||||||||||||| |||| |||| |||
seq2  TGAGCCAGAT-ATAAAACTACAATACACACATAGTTTGATA-TTTATGTG  48

seq1  AGCATTGGGGGAGTATG-AACTTGTATGAGTTTTGTGTACTTGTCCCGAC  99
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCATT-GGGGAGTATGAAACTTGTATGAGTTTTGTGTACTTGTCCCGAC  97

seq1  AACAT-AACTTTTGAGTTAAGTATTGGGAATTCTTCAACTTCAGAAGAAT  148
      ||||| | |||||||||||||||||| ||| |||||||||||||||||||
seq2  AACATGAGCTTTTGAGTTAAGTATTGTGAAATCTTCAACTTCAGAAGAAT  147

seq1  TGATTGAATGTACTTTGTGTCTTTGATGGCATTTGTTATAGAACTCTATG  198
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGATTGAATGTACTTTGTGTCTTTGATGGCATTTGTTATTGAACTCTATG  197

seq1  GAATATAATTATCCAGCGAAAACTATGCTCC-AAGCTTTGGTTACCCTCT  247
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATATAATTATCCAGCGAAAACTATGCTCCAAAGCTTTGGTTACCCTCT  247

seq1  GAAAATCCAGAAAATGAATAAAACTCAAGTAGAACACTACAAATGCCTCT  297
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAAATCCAGAAAATGAATAAAACTCAAGTAGAACACTACAAATGCCTAT  297

seq1  GTTTAATATCTTGTCCACGTTGTCTAATTCATGCTGATCAAAGTAAATAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATATCTTGTCCACGTTGTCTAATTCATGCTGATCAAAGTAAATAA  347

seq1  TATTAGGTAGGGCTTCCGTCTTCTGGCTTTAGAATGTGGAGGGGAGTTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTAGGGCTTCCGTCTTCTGGCTTTAGAATGTGGAGGGGAGTTAC  397

seq1  AGCAAAGAAAGCTAAGGTCTAATGAAGGTTTAGCTTAGTCTCTTCCCCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGAAAGCTAAGGTCTAATGAAGGTTTAGCTTAGTCTCTTCCCCAC  447

seq1  GAATGGGGCATGGTCTGCCTTGGTCCTAAGGTACTCTTACTTTGAATGTT  497
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  GAATGGGGCATGGTCTTCTTTGGTCCTAAGGTACTCTTACTTTGAATGTT  497

seq1  TTCCACTATCGTGCTTGCCTCTAGCACACCAGTGTCAAGTTCTAGTCCAG  547
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCCACTATCGTGCTTGCCTCTAGCACACCAGTGTCAAGTTATAGTCCAG  547

seq1  TCATCTGTTTTCTGTGTCAATGCTTTCAGGATTCTGAGTCCCCCTCAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTTTCTGTGTCAATGCTTTCAGGATTCTGAGTCCCCCTCAACT  597

seq1  GTCTCTGAACCACATGCTTTCTAGTGCCCGTTTCCTGTTGTTTCTGCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAACCACATGCTTTCTAGTGCCCGTTTCCTGTTGTTTCTGCTTG  647

seq1  CTTGATGCGCTGTCATCTTGTCTTACTAATGCAACAGGGAGTTCTTGAAG  697
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTGATGCGCTGTCATCTTGTCTTATTAATGCAACAGGGAGTTCTTGAAG  697

seq1  GGCAATACTTCTTCCATTGTTTTCTGCTACTTTAGAAGTGAAGCAGAGTT  747
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCAATACTTTTTCCATTGTTTTCTGCTACTTTAGAAGTGAAGCAGAGTT  747

seq1  GAAAAATGTCTTAAACACCACAATTTGTGACCATCAAATAAAGAAACAAA  797
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGTTTTAAACACCACAATTTGTGACCATCAAATAAAGAAACAAA  797

seq1  CATAAAATAATTTTTAGGCCACATAGAAGACAAAGAAGCAAGTAGCAACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAATTTTTAGGCCACATAGAAGACAAAGAAGCAAGTAGCAACT  847

seq1  ATGTGCAATTCAATTATCCAGAGGGAATTGGTGGCACTTAAGATTCTGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGTGCAATTCAATTATCCAGAGGGAATTGGTGGCACTTAAGATTTTGGG  897

seq1  TCATGTAGGTTCCAACAGGTCTCTGGGCACACACGTAACATGTGATATTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGGTTCCAACAGGTCTCTGGGCACACACGTAACATGTGATATTC  947

seq1  CATACATGAAACCATCAGCTACTTTGCATGATCCTAGTGGAATTC  992
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGAAACCATCAGCTACTTTGCATGATCCTAGTGGAATTC  992