BAC Information

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BAC

Clone NameB6Ng01-102F23
Chromosome6 (Build37)
Map Location 44,837,132 - 44,927,994
singlet/doubletdoublet
Overlap geneLOC100040210
Upstream genenone
Downstream geneCntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F23.bB6Ng01-102F23.g
ACCDH911284DH911285
length1,0761,097
definitionDH911284|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F23, 5' end.DH911285|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,926,902 - 44,927,994)(44,837,132 - 44,838,254)
sequence
gaattcaggtacttttaagacattctaatgactaaaacaaaaaaacagac
taataaaaccagtgccaaataatttactttgagaataattatttataaaa
ttaagtaagtgatgtaaatgtgagtcagaaataaaaggaaacaaatgatc
atacacacacgaagaaacaaagaagaaggcagatcaggagtaatacacac
agtgattcttctatattcataagtcttttacagatcatggatccaagaca
tttttctctttagactggcctctatattcctaagcctttgtactatttat
tgattgtctctcaaagtgattacatagagttatacagtatactaaattag
tataaaaagaaggtaaacattaaaagtaacttatacaaatgaagttttaa
agtgattatatagagctatacagtatactaaattagtataaaaagaaggt
aatcattaaaagtaacttacacaaatgaagttataaagtggtagagatag
atgacgtggagaatgtgcatcttcattttcaaaggcttcacgaggatcaa
acacaaagggcaaggacacagatatcaagtagtctgtgacagaccaagag
tggcacacattgcctgtgtttgagaaatttaggctgattgggcacagaag
acacaacatatgtatgtacaattttgtggcaaccatagctggacctgatg
aatgaaaatataaaatgaatgggaagtagtttaaaatcagatcaggtaaa
attatttcagtgatggaaaatatctatttcacttcctgtatgactgggga
agggagatttgataaaatgtctgcttaacacagataatcaaatcatatca
aagttataatttcactaatgtgcaacaattagtttattatttagttacag
gaatatgagtgatcttttatacaaacatctataataagggtactgaggag
cctattaatacatcaaagcaaactctggccacagtctctctggtcatacc
cacagtactgtagtgagcaactagctacaacttgtccctaccctcactct
ctgtttagagcctcacttcccttccc
gaattctttataaattttggatattagccatctgctgaatatggggttgg
tgaagatcctttgcttattggtagactgctcttttgtcctaatgatagtg
tccttttctttacagaagattttcagtttcgtgaggtgccacgtgtcaat
tgttgatattagaaccttagccatccctcttttgttcaggaagttgtctc
ctgtaccaattagttcaaggttttttccccagttttgaacatttgaacat
gatattgtctgatcctccttcccaaagttttctagagtcaagttcaaatc
atgagcccaggtaaataatgccctcacaatgtcctgctcccctttccagg
gtctgcacctccacatcatcctgtaaccatccatattactctttctatct
aaaaatctctttttctttttctttttctattttttcatatatatatatat
atatgtcctagtgtgttaaagcctattgtcctagcccaggtttaatttca
agtacttgaaaagaattccagacaagtattaaatggtgttgtagaggttt
tccttatgttccagtttacccagtagcaccaccaggatgactttctcaaa
ctgaaacccatataccatcactgcccacagagcagttaaaacctctggga
agcaacccaatggatatttggcaagagggtacagcaggaactaatggctc
ttaggatgtctgttgctgaaggaatttctgtcttccttgatcagttaacc
atttcaagtaggggaaccatccatggagcagctgtcagtgtatgaaggcc
tgagggatgaaaatctctagagttgcccaagtggtaacccttttaataca
cctacagtaaagttcctcggatctgatactactgtatgtagacagagtag
atctgacaggagtaaccaggataatggtctgtcccatacatgcctgcaga
aacatgctttctatctaagcctgattggagaacatacatcatagtctttg
acaatgtactgctgtgctatgagctctaaaaataaaataaattctgctta
aaatattcacagatctaaagatgctagtcgccatcactggaagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44926902_44927994
seq2: B6Ng01-102F23.b_38_1113 (reverse)

seq1  GGGAAGGGAAGTGAAGCTCCTAAACAGGAGAGGTTGAGGGTAGGGGACAA  50
      |||||||||||||| ||| ||||||| |||||  |||||||| |||||||
seq2  GGGAAGGGAAGTGAGGCT-CTAAACA-GAGAG--TGAGGGTA-GGGACAA  45

seq1  GGTTGGTAGCTAGTTTGGCTCACTAACAGGTACTTGTGGGTATGGACCAA  100
      |  | ||||||||||  ||||||| ||| |||| ||||||||| |||| |
seq2  G--TTGTAGCTAGTT--GCTCACT-ACA-GTAC-TGTGGGTAT-GACC-A  86

seq1  GAGAGACTGGTGGCCAGAGTTTTGCTTTGATGTATTAAATAGGCTCCTCA  150
      |||||||| |||||||||| |||||||||||||||| |||||||||||||
seq2  GAGAGACT-GTGGCCAGAG-TTTGCTTTGATGTATT-AATAGGCTCCTCA  133

seq1  GTACCCTTATTATAGATGTTTGTATAAAAGATCACTCATATTCCTGTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTTATTATAGATGTTTGTATAAAAGATCACTCATATTCCTGTAAC  183

seq1  TAAATAATAAACTAATTGTTGCACATTAGTGAAATTATAACTTTGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAAACTAATTGTTGCACATTAGTGAAATTATAACTTTGATATG  233

seq1  ATTTGATTATCTGTGTTAAGCAGACATTTTATCAAATCTCCCTTCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTATCTGTGTTAAGCAGACATTTTATCAAATCTCCCTTCCCCAG  283

seq1  TCATACAGGAAGTGAAATAGATATTTTCCATCACTGAAATAATTTTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGGAAGTGAAATAGATATTTTCCATCACTGAAATAATTTTACCT  333

seq1  GATCTGATTTTAAACTACTTCCCATTCATTTTATATTTTCATTCATCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATTTTAAACTACTTCCCATTCATTTTATATTTTCATTCATCAGG  383

seq1  TCCAGCTATGGTTGCCACAAAATTGTACATACATATGTTGTGTCTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTATGGTTGCCACAAAATTGTACATACATATGTTGTGTCTTCTGT  433

seq1  GCCCAATCAGCCTAAATTTCTCAAACACAGGCAATGTGTGCCACTCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATCAGCCTAAATTTCTCAAACACAGGCAATGTGTGCCACTCTTGG  483

seq1  TCTGTCACAGACTACTTGATATCTGTGTCCTTGCCCTTTGTGTTTGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACAGACTACTTGATATCTGTGTCCTTGCCCTTTGTGTTTGATCC  533

seq1  TCGTGAAGCCTTTGAAAATGAAGATGCACATTCTCCACGTCATCTATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAAGCCTTTGAAAATGAAGATGCACATTCTCCACGTCATCTATCTC  583

seq1  TACCACTTTATAACTTCATTTGTGTAAGTTACTTTTAATGATTACCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTTATAACTTCATTTGTGTAAGTTACTTTTAATGATTACCTTCT  633

seq1  TTTTATACTAATTTAGTATACTGTATAGCTCTATATAATCACTTTAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACTAATTTAGTATACTGTATAGCTCTATATAATCACTTTAAAAC  683

seq1  TTCATTTGTATAAGTTACTTTTAATGTTTACCTTCTTTTTATACTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTATAAGTTACTTTTAATGTTTACCTTCTTTTTATACTAATTT  733

seq1  AGTATACTGTATAACTCTATGTAATCACTTTGAGAGACAATCAATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTGTATAACTCTATGTAATCACTTTGAGAGACAATCAATAAATA  783

seq1  GTACAAAGGCTTAGGAATATAGAGGCCAGTCTAAAGAGAAAAATGTCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGGCTTAGGAATATAGAGGCCAGTCTAAAGAGAAAAATGTCTTG  833

seq1  GATCCATGATCTGTAAAAGACTTATGAATATAGAAGAATCACTGTGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGATCTGTAAAAGACTTATGAATATAGAAGAATCACTGTGTGTA  883

seq1  TTACTCCTGATCTGCCTTCTTCTTTGTTTCTTCGTGTGTGTATGATCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTGATCTGCCTTCTTCTTTGTTTCTTCGTGTGTGTATGATCATT  933

seq1  TGTTTCCTTTTATTTCTGACTCACATTTACATCACTTACTTAATTTTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTTTATTTCTGACTCACATTTACATCACTTACTTAATTTTATA  983

seq1  AATAATTATTCTCAAAGTAAATTATTTGGCACTGGTTTTATTAGTCTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATTCTCAAAGTAAATTATTTGGCACTGGTTTTATTAGTCTGTT  1033

seq1  TTTTTGTTTTAGTCATTAGAATGTCTTAAAAGTACCTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTAGTCATTAGAATGTCTTAAAAGTACCTGAATTC  1076

seq1: chr6_44837132_44838254
seq2: B6Ng01-102F23.g_64_1160

seq1  GAATTCTTTATAAATTTTGGATATTAGCCATCTGCTGAATATGGGGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAAATTTTGGATATTAGCCATCTGCTGAATATGGGGTTGG  50

seq1  TGAAGATCCTTTGCTTATTGGTAGACTGCTCTTTTGTCCTAATGATAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCCTTTGCTTATTGGTAGACTGCTCTTTTGTCCTAATGATAGTG  100

seq1  TCCTTTTCTTTACAGAAGATTTTCAGTTTCGTGAGGTGCCACGTGTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTACAGAAGATTTTCAGTTTCGTGAGGTGCCACGTGTCAAT  150

seq1  TGTTGATATTAGAACCTTAGCCATCCCTCTTTTGTTCAGGAAGTTGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATATTAGAACCTTAGCCATCCCTCTTTTGTTCAGGAAGTTGTCTC  200

seq1  CTGTACCAATTAGTTCAAGGTTTTTTCCCCAGTTTTGAACATTTGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCAATTAGTTCAAGGTTTTTTCCCCAGTTTTGAACATTTGAACAT  250

seq1  GATATTGTCTGATCCTCCTTCCCAAAGTTTTCTAGAGTCAAGTTCAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTCTGATCCTCCTTCCCAAAGTTTTCTAGAGTCAAGTTCAAATC  300

seq1  ATGAGCCCAGGTAAATAATGCCCTCACAATGTCCTGCTCCCCTTTCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCAGGTAAATAATGCCCTCACAATGTCCTGCTCCCCTTTCCAGG  350

seq1  GTCTGCACCTCCACATCATCCTGTAACCATCCATATTACTCTTTCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACCTCCACATCATCCTGTAACCATCCATATTACTCTTTCTATCT  400

seq1  AAAAATCTCTTTTTCTTTTTCTTTTTCTATTTTTTCATATATATATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCTTTTTCTTTTTCTTTTTCTATTTTTTCATATATATATATAT  450

seq1  ATATGTCCTAGTGTGTTAAAGCCTATTGTCCTAGCCCAGGTTTAATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCTAGTGTGTTAAAGCCTATTGTCCTAGCCCAGGTTTAATTTCA  500

seq1  AGTACTTGAAAAGAATTCCAGACAAGTATTAAATGGTGTTGTAGAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGAAAAGAATTCCAGACAAGTATTAAATGGTGTTGTAGAGGTTT  550

seq1  TCCTTATGTTCCAGTTTACCCAGTAGCACCACCAGGATGACTTTCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGTTCCAGTTTACCCAGTAGCACCACCAGGATGACTTTCTCAAA  600

seq1  CTGAAACCCATATACCATCACTGCCCACAGAGCAGTTAAAACCTCTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCCATATACCATCACTGCCCACAGAGCAGTTAAAACCTCTGGGA  650

seq1  AGCAACCCAATGGATATTTGGCAAGAGGGTACAGCAGGAACTAATGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCCAATGGATATTTGGCAAGAGGGTACAGCAGGAACTAATGGCTC  700

seq1  TTAGGATGTCTGTTGCTGAAGGAATTTCTGTCTTCCTTGATCAGTTAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGTCTGTTGCTGAAGGAATTTCTGTCTTCCTTGATCAGTTAACC  750

seq1  ATTTCAAGTAGGGGAACCATCCATGGAGCAGCTGTCAGTGTATGAAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGTAGGGGAACCATCCATGGAGCAGCTGTCAGTGTATGAAGGCC  800

seq1  TGAGGGATGAAAATCTCTAGAGTTGCCCAAGTGGTAACCCTTTTAATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATGAAAATCTCTAGAGTTGCCCAAGTGGTAACCCTTTTAATACA  850

seq1  CCTACAGTAAAGTTCCTCGGATCTGATACTACTGTAATGTAGACAGAGTA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CCTACAGTAAAGTTCCTCGGATCTGATACTACTGT-ATGTAGACAGAGT-  898

seq1  AGATCTGACAGGAGGTAACCAGGAATAAATGGTCTGTCCCATACAATGCC  950
      ||||||||||||| ||||||||||   ||||||||||||||||| |||||
seq2  AGATCTGACAGGA-GTAACCAGGA--TAATGGTCTGTCCCATAC-ATGCC  944

seq1  TGCAGAAACATGCTTTCTATCTAAAGCCTGATTGGAGAACATAACATCAA  1000
      |||||||||||||||||||||| ||||||||||||||||||| ||||| |
seq2  TGCAGAAACATGCTTTCTATCT-AAGCCTGATTGGAGAACAT-ACATC-A  991

seq1  TAGTTCTTTGAACAAATGTACTGCTGTGCTATTGAGCTCTAAAAAAATAA  1050
      ||| |||||||   ||||||||||||||||| ||||||||  ||||||||
seq2  TAG-TCTTTGA--CAATGTACTGCTGTGCTA-TGAGCTCT--AAAAATAA  1035

seq1  AATAAAATATCTGCTTTAAAAATTATTCACAAGAATCAAAAGATGGCCTA  1100
      ||||||   |||||||   ||| ||||||||   ||| |||||||  |||
seq2  AATAAA--TTCTGCTT---AAAATATTCACA--GATCTAAAGATG--CTA  1076

seq1  GTCGGCCATCACTGGAAAGAGGG  1123
      ||| ||||||||||| |||||||
seq2  GTC-GCCATCACTGG-AAGAGGG  1097